PUB - Publikationen an der Universität Bielefeld

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• [20]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946303

  Bohnenkämper, L., Dias Vieira Braga, M., Dörr, D., Stoye, J.: Computing the rearrangement distance of natural genomes. Journal of Computational Biology. 28, 410-431 (2021).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [19]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937712

  Rubert, D., Martinez, F.H.V., Stoye, J., Dörr, D.: Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants. BMC Genomics. 21, : 273 (2020).

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [18]
  

  2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2943733

  Nützmann, H.-W., Dörr, D., Ramírez-Colmenero, A., Sotelo-Fonseca, J.E., Wegel, E., Di Stefano, M., Wingett, S.W., Fraser, P., Hurst, L., Fernandez-Valverde, S.L., Osbourn, A.: Active and repressed biosynthetic gene clusters have spatially distinct chromosome states. Proceedings of the National Academy of Sciences. : 201920474 (2020).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [17]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939598

  Sevillya, G., Dörr, D., Lerner, Y., Stoye, J., Steel, M., Snir, S.: Horizontal Gene Transfer Phylogenetics: A Random Walk Approach. Molecular Biology and Evolution. 37, 1470–1479 (2020).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [16]
  

  2020 | Preprint | Veröffentlicht | PUB-ID: 2939861

  Bohnenkämper, L., Dias Vieira Braga, M., Dörr, D., Stoye, J.: Computing the rearrangement distance of natural genomes. arXiv:2001.02139. (2020).

  PUB | Download (ext.) | arXiv
   
• [15]
  

  2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2939729

  Bohnenkämper, L., Dias Vieira Braga, M., Dörr, D., Stoye, J.: Computing the rearrangement distance of natural genomes. Proceedings of RECOMB 2020. LNBI. 12074, p. 3-18. (2020).

  PUB | DOI
   
• [14]
  

  2019 | Datenpublikation | PUB-ID: 2936848

  Dörr, D., Rubert, D.: Supplementary Data for "Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants". Bielefeld University (2019).

  PUB | Dateien verfügbar | DOI
   
• [13]
  

  2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2932883

  Dörr, D., Stoye, J.: A Perspective on Comparative and Functional Genomics. In: Warnow, T. (ed.) Bioinformatics and Phylogenetics. Computational Biology. 29, p. 361-372. Springer , Cham (2019).

  PUB | DOI
   
• [12]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919005

  Schulz, T., Stoye, J., Dörr, D.: GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data. BMC Genomics. 19, : 308 (2018).

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [11]
  

  2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913922

  Dörr, D., Feijão, P., Stoye, J.: Family-Free Genome Comparison. In: Setubal, J.C., Stadler, P., and Stoye, J. (eds.) Comparative Genomics: Methods and Protocols. Methods in Molecular Biology. 1704, p. 331-342. Springer Verlag, New York (2018).

  PUB | DOI
   
• [10]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911814

  Dörr, D., Balaban, M., Feijão, P., Chauve, C.: The gene family-free median of three. Algorithms for Molecular Biology. 12, : 14 (2017).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [9]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912492

  Luhmann, N., Dörr, D., Chauve, C.: Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes. Microbial Genomics. 3, e000123 (2017).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [8]
  

  2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913016

  Schulz, T., Stoye, J., Dörr, D.: Finding Teams in Graphs and its Application to Spatial Gene Cluster Discovery. Proceedings of RECOMB-CG 2017. Lecture Notes in Bioinformatics. 1704, p. 197-212. Springer Verlag, Berlin (2017).

  PUB | DOI
   
• [7]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909967

  Dörr, D., Kowada, L.A.B., Soares de Araujo, F.E., Deshpande, S., Dantas, S., Moret, B.M.E., Stoye, J.: New Genome Similarity Measures based on Conserved Gene Adjacencies. Journal of Computational Biology. 24, 616-634 (2017).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [6]
  

  2016 | Bielefelder E-Dissertation | PUB-ID: 2902049

  Dörr, D.: Gene family-free genome comparison. Universität Bielefeld, Bielefeld (2016).

  PUB | PDF
   
• [5]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685362

  Lechner, M., Hernandez-Rosales, M., Dörr, D., Wieseke, N., Thévenin, A., Stoye, J., Hartmann, R.K., Prohaska, S.J., Stadler, P.F.: Orthology Detection Combining Clustering and Synteny for Very Large Datasets. PLoS ONE. 9, : e105015 (2014).

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [4]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2687033

  Dörr, D., Stoye, J., Böcker, S., Jahn, K.: Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings. BMC Genomics. 15, : S2 (2014).

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [3]
  

  2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648

  Dias Vieira Braga, M., Chauve, C., Dörr, D., Jahn, K., Stoye, J., Thévenin, A., Wittler, R.: The Potential of Family-Free Genome Comparison. In: Chauve, C., El-Mabrouk, N., and Tannier, E. (eds.) Models and Algorithms for Genome Evolution. Computational Biology Series. 19, p. 287-307. Springer Verlag, London (2013).

  PUB | DOI
   
• [2]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512642

  Dörr, D., Thévenin, A., Stoye, J.: Gene family assignment-free comparative genomics. BMC Bioinformatics. 13, : S3 (2012).

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [1]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560353

  Dörr, D., Gronau, I., Moran, S., Yavneh, I.: Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions. Algorithms for Molecular Biology. 7, : 22 (2012).

  PUB | PDF | DOI | WoS | PubMed | Europe PMC