PUB - Publikationen an der Universität Bielefeld

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• [20]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946303

  L. Bohnenkämper, et al., “Computing the rearrangement distance of natural genomes”, Journal of Computational Biology, vol. 28, 2021, pp. 410-431.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [19]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937712

  D. Rubert, et al., “Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants”, BMC Genomics, vol. 21, 2020, : 273.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [18]
  

  2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2943733

  H.-W. Nützmann, et al., “Active and repressed biosynthetic gene clusters have spatially distinct chromosome states”, Proceedings of the National Academy of Sciences, 2020, : 201920474.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [17]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939598

  G. Sevillya, et al., “Horizontal Gene Transfer Phylogenetics: A Random Walk Approach”, Molecular Biology and Evolution, vol. 37, 2020, pp. 1470–1479.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [16]
  

  2020 | Preprint | Veröffentlicht | PUB-ID: 2939861

  L. Bohnenkämper, et al., “Computing the rearrangement distance of natural genomes”, arXiv:2001.02139, 2020.

  PUB | Download (ext.) | arXiv
   
• [15]
  

  2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2939729

  L. Bohnenkämper, et al., “Computing the rearrangement distance of natural genomes”, Proceedings of RECOMB 2020, LNBI, vol. 12074, 2020, pp.3-18.

  PUB | DOI
   
• [14]
  

  2019 | Datenpublikation | PUB-ID: 2936848

  D. Dörr and D. Rubert, Supplementary Data for "Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants", Bielefeld University, 2019.

  PUB | Dateien verfügbar | DOI
   
• [13]
  

  2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2932883

  D. Dörr and J. Stoye, “A Perspective on Comparative and Functional Genomics”, Bioinformatics and Phylogenetics, T. Warnow, ed., Computational Biology, vol. 29, Cham: Springer , 2019, pp.361-372.

  PUB | DOI
   
• [12]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919005

  T. Schulz, J. Stoye, and D. Dörr, “GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data”, BMC Genomics, vol. 19, 2018, : 308.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [11]
  

  2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913922

  D. Dörr, P. Feijão, and J. Stoye, “Family-Free Genome Comparison”, Comparative Genomics: Methods and Protocols, J.C. Setubal, P. Stadler, and J. Stoye, eds., Methods in Molecular Biology, vol. 1704, New York: Springer Verlag, 2018, pp.331-342.

  PUB | DOI
   
• [10]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911814

  D. Dörr, et al., “The gene family-free median of three”, Algorithms for Molecular Biology, vol. 12, 2017, : 14.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [9]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912492

  N. Luhmann, D. Dörr, and C. Chauve, “Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes”, Microbial Genomics, vol. 3, 2017, pp. e000123.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [8]
  

  2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913016

  T. Schulz, J. Stoye, and D. Dörr, “Finding Teams in Graphs and its Application to Spatial Gene Cluster Discovery”, Proceedings of RECOMB-CG 2017, Lecture Notes in Bioinformatics, vol. 1704, Berlin: Springer Verlag, 2017, pp.197-212.

  PUB | DOI
   
• [7]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909967

  D. Dörr, et al., “New Genome Similarity Measures based on Conserved Gene Adjacencies”, Journal of Computational Biology, vol. 24, 2017, pp. 616-634.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [6]
  

  2016 | Bielefelder E-Dissertation | PUB-ID: 2902049

  D. Dörr, Gene family-free genome comparison, Bielefeld: Universität Bielefeld, 2016.

  PUB | PDF
   
• [5]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685362

  M. Lechner, et al., “Orthology Detection Combining Clustering and Synteny for Very Large Datasets”, PLoS ONE, vol. 9, 2014, : e105015.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [4]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2687033

  D. Dörr, et al., “Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings”, BMC Genomics, vol. 15, 2014, : S2.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [3]
  

  2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648

  M. Dias Vieira Braga, et al., “The Potential of Family-Free Genome Comparison”, Models and Algorithms for Genome Evolution, C. Chauve, N. El-Mabrouk, and E. Tannier, eds., Computational Biology Series, vol. 19, London: Springer Verlag, 2013, pp.287-307.

  PUB | DOI
   
• [2]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512642

  D. Dörr, A. Thévenin, and J. Stoye, “Gene family assignment-free comparative genomics”, BMC Bioinformatics, vol. 13, 2012, : S3.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [1]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560353

  D. Dörr, et al., “Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions”, Algorithms for Molecular Biology, vol. 7, 2012, : 22.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC