PUB - Publikationen an der Universität Bielefeld

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• [20]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946303

  Bohnenkämper, L., Dias Vieira Braga, M., Dörr, D., and Stoye, J. (2021). Computing the rearrangement distance of natural genomes. Journal of Computational Biology 28, 410-431.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [19]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937712

  Rubert, D., Martinez, F. H. V., Stoye, J., and Dörr, D. (2020). Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants. BMC Genomics 21:273.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [18]
  

  2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2943733

  Nützmann, H. - W., Dörr, D., Ramírez-Colmenero, A., Sotelo-Fonseca, J. E., Wegel, E., Di Stefano, M., Wingett, S. W., Fraser, P., Hurst, L., Fernandez-Valverde, S. L., et al. (2020). Active and repressed biosynthetic gene clusters have spatially distinct chromosome states. Proceedings of the National Academy of Sciences:201920474.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [17]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939598

  Sevillya, G., Dörr, D., Lerner, Y., Stoye, J., Steel, M., and Snir, S. (2020). Horizontal Gene Transfer Phylogenetics: A Random Walk Approach. Molecular Biology and Evolution 37, 1470–1479.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [16]
  

  2020 | Preprint | Veröffentlicht | PUB-ID: 2939861

  Bohnenkämper, L., Dias Vieira Braga, M., Dörr, D., and Stoye, J. (2020). Computing the rearrangement distance of natural genomes. arXiv:2001.02139.

  PUB | Download (ext.) | arXiv
   
• [15]
  

  2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2939729

  Bohnenkämper, L., Dias Vieira Braga, M., Dörr, D., and Stoye, J. (2020). “Computing the rearrangement distance of natural genomes” in Proceedings of RECOMB 2020 LNBI, vol. 12074, 3-18.

  PUB | DOI
   
• [14]
  

  2019 | Datenpublikation | PUB-ID: 2936848

  Dörr, D., and Rubert, D. (2019). Supplementary Data for "Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants". Bielefeld University.

  PUB | Dateien verfügbar | DOI
   
• [13]
  

  2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2932883

  Dörr, D., and Stoye, J. (2019). “A Perspective on Comparative and Functional Genomics” in Bioinformatics and Phylogenetics, Warnow, T. ed. Computational Biology, vol. 29, (Cham: Springer ), 361-372.

  PUB | DOI
   
• [12]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919005

  Schulz, T., Stoye, J., and Dörr, D. (2018). GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data. BMC Genomics 19:308.

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• [11]
  

  2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913922

  Dörr, D., Feijão, P., and Stoye, J. (2018). “Family-Free Genome Comparison” in Comparative Genomics: Methods and Protocols, Setubal, J. C., Stadler, P., and Stoye, J. eds. Methods in Molecular Biology, vol. 1704, (New York: Springer Verlag), 331-342.

  PUB | DOI
   
• [10]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911814

  Dörr, D., Balaban, M., Feijão, P., and Chauve, C. (2017). The gene family-free median of three. Algorithms for Molecular Biology 12:14.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [9]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912492

  Luhmann, N., Dörr, D., and Chauve, C. (2017). Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes. Microbial Genomics 3, e000123.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [8]
  

  2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913016

  Schulz, T., Stoye, J., and Dörr, D. (2017). “Finding Teams in Graphs and its Application to Spatial Gene Cluster Discovery” in Proceedings of RECOMB-CG 2017 Lecture Notes in Bioinformatics, vol. 1704, (Berlin: Springer Verlag), 197-212.

  PUB | DOI
   
• [7]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909967

  Dörr, D., Kowada, L. A. B., Soares de Araujo, F. E., Deshpande, S., Dantas, S., Moret, B. M. E., and Stoye, J. (2017). New Genome Similarity Measures based on Conserved Gene Adjacencies. Journal of Computational Biology 24, 616-634.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [6]
  

  2016 | Bielefelder E-Dissertation | PUB-ID: 2902049

  Dörr, D. (2016). Gene family-free genome comparison. Bielefeld: Universität Bielefeld.

  PUB | PDF
   
• [5]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685362

  Lechner, M., Hernandez-Rosales, M., Dörr, D., Wieseke, N., Thévenin, A., Stoye, J., Hartmann, R. K., Prohaska, S. J., and Stadler, P. F. (2014). Orthology Detection Combining Clustering and Synteny for Very Large Datasets. PLoS ONE 9:e105015.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [4]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2687033

  Dörr, D., Stoye, J., Böcker, S., and Jahn, K. (2014). Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings. BMC Genomics 15:S2.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [3]
  

  2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648

  Dias Vieira Braga, M., Chauve, C., Dörr, D., Jahn, K., Stoye, J., Thévenin, A., and Wittler, R. (2013). “The Potential of Family-Free Genome Comparison” in Models and Algorithms for Genome Evolution, Chauve, C., El-Mabrouk, N., and Tannier, E. eds. Computational Biology Series, vol. 19, (London: Springer Verlag), 287-307.

  PUB | DOI
   
• [2]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512642

  Dörr, D., Thévenin, A., and Stoye, J. (2012). Gene family assignment-free comparative genomics. BMC Bioinformatics 13:S3.

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• [1]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560353

  Dörr, D., Gronau, I., Moran, S., and Yavneh, I. (2012). Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions. Algorithms for Molecular Biology 7:22.

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