20 Publikationen
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946303Bohnenkämper, Leonard, Dias Vieira Braga, Marília, Dörr, Daniel, and Stoye, Jens. 2021. “Computing the rearrangement distance of natural genomes”. Journal of Computational Biology 28 (4): 410-431.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937712Rubert, Diego, Martinez, Fábio Henrique Viduani, Stoye, Jens, and Dörr, Daniel. 2020. “Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants”. BMC Genomics 21 (Suppl. 2): 273.
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2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2943733Nützmann, Hans-Wilhelm, Dörr, Daniel, Ramírez-Colmenero, América, Sotelo-Fonseca, Jesús Emiliano, Wegel, Eva, Di Stefano, Marco, Wingett, Steven W., et al. 2020. “Active and repressed biosynthetic gene clusters have spatially distinct chromosome states”. Proceedings of the National Academy of Sciences: 201920474.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939598Sevillya, Gur, Dörr, Daniel, Lerner, Yael, Stoye, Jens, Steel, Mike, and Snir, Sagi. 2020. “Horizontal Gene Transfer Phylogenetics: A Random Walk Approach”. Molecular Biology and Evolution 37 (5): 1470–1479.
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2020 | Preprint | Veröffentlicht | PUB-ID: 2939861Bohnenkämper, Leonard, Dias Vieira Braga, Marília, Dörr, Daniel, and Stoye, Jens. 2020. “Computing the rearrangement distance of natural genomes”. arXiv:2001.02139.
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2019 | Datenpublikation | PUB-ID: 2936848Dörr, Daniel, and Rubert, Diego. 2019. Supplementary Data for "Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants". Bielefeld University.
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2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913922Dörr, Daniel, Feijão, Pedro, and Stoye, Jens. 2018. “Family-Free Genome Comparison”. In Comparative Genomics: Methods and Protocols, ed. João C. Setubal, Peter Stadler, and Jens Stoye, 1704:331-342. Methods in Molecular Biology. New York: Springer Verlag.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911814Dörr, Daniel, Balaban, Metin, Feijão, Pedro, and Chauve, Cedric. 2017. “The gene family-free median of three”. Algorithms for Molecular Biology 12 (1): 14.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912492Luhmann, Nina, Dörr, Daniel, and Chauve, Cedric. 2017. “Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes”. Microbial Genomics 3 (9): e000123.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913016Schulz, Tizian, Stoye, Jens, and Dörr, Daniel. 2017. “Finding Teams in Graphs and its Application to Spatial Gene Cluster Discovery”. In Proceedings of RECOMB-CG 2017, 1704:197-212. Lecture Notes in Bioinformatics. Berlin: Springer Verlag.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909967Dörr, Daniel, Kowada, Luis Antonio B., Soares de Araujo, Francisco Eloi, Deshpande, Shachi, Dantas, Simone, Moret, Bernard M. E., and Stoye, Jens. 2017. “New Genome Similarity Measures based on Conserved Gene Adjacencies”. Journal of Computational Biology 24 (6): 616-634.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685362Lechner, Marcus, Hernandez-Rosales, Maribel, Dörr, Daniel, Wieseke, Nicolas, Thévenin, Annelyse, Stoye, Jens, Hartmann, Roland K., Prohaska, Sonja J., and Stadler, Peter F. 2014. “Orthology Detection Combining Clustering and Synteny for Very Large Datasets”. PLoS ONE 9 (8): e105015.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2687033Dörr, Daniel, Stoye, Jens, Böcker, Sebastian, and Jahn, Katharina. 2014. “Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings”. BMC Genomics 15 (Suppl. 6: Proc. of RECOMB-CG 2014): S2.
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2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648Dias Vieira Braga, Marília, Chauve, Cedric, Dörr, Daniel, Jahn, Katharina, Stoye, Jens, Thévenin, Annelyse, and Wittler, Roland. 2013. “The Potential of Family-Free Genome Comparison”. In Models and Algorithms for Genome Evolution, ed. Cedric Chauve, Nadia El-Mabrouk, and Eric Tannier, 19:287-307. Computational Biology Series. London: Springer Verlag.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560353Dörr, Daniel, Gronau, Ilan, Moran, Shlomo, and Yavneh, Irad. 2012. “Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions”. Algorithms for Molecular Biology 7 (1): 22.