20 Publikationen

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  • [20]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946303
    Bohnenkämper, L., Dias Vieira Braga, M., Dörr, D., & Stoye, J. (2021). Computing the rearrangement distance of natural genomes. Journal of Computational Biology, 28(4), 410-431. https://doi.org/10.1089/cmb.2020.0434
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [19]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937712 OA
    Rubert, D., Martinez, F. H. V., Stoye, J., & Dörr, D. (2020). Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants. BMC Genomics, 21(Suppl. 2), 273. https://doi.org/10.1186/s12864-020-6609-x
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [18]
    2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2943733
    Nützmann, H. - W., Dörr, D., Ramírez-Colmenero, A., Sotelo-Fonseca, J. E., Wegel, E., Di Stefano, M., Wingett, S. W., et al. (2020). Active and repressed biosynthetic gene clusters have spatially distinct chromosome states. Proceedings of the National Academy of Sciences, 201920474. doi:10.1073/pnas.1920474117
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [17]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939598
    Sevillya, G., Dörr, D., Lerner, Y., Stoye, J., Steel, M., & Snir, S. (2020). Horizontal Gene Transfer Phylogenetics: A Random Walk Approach. Molecular Biology and Evolution, 37(5), 1470–1479. doi:10.1093/molbev/msz302
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [16]
    2020 | Preprint | Veröffentlicht | PUB-ID: 2939861
    Bohnenkämper, L., Dias Vieira Braga, M., Dörr, D., & Stoye, J. (2020). Computing the rearrangement distance of natural genomes. arXiv:2001.02139
    PUB | Download (ext.) | arXiv
     
  • [15]
    2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2939729
    Bohnenkämper, L., Dias Vieira Braga, M., Dörr, D., & Stoye, J. (2020). Computing the rearrangement distance of natural genomes. Proceedings of RECOMB 2020, LNBI, 12074, 3-18. doi:10.1007/978-3-030-45257-5_1
    PUB | DOI
     
  • [14]
    2019 | Datenpublikation | PUB-ID: 2936848 OA
    Dörr, D., & Rubert, D. (2019). Supplementary Data for "Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants". Bielefeld University. https://doi.org/10.4119/unibi/2936848
    PUB | Dateien verfügbar | DOI
     
  • [13]
    2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2932883
    Dörr, D., & Stoye, J. (2019). A Perspective on Comparative and Functional Genomics. In T. Warnow (Ed.), Computational Biology: Vol. 29. Bioinformatics and Phylogenetics (pp. 361-372). Cham: Springer . doi:10.1007/978-3-030-10837-3_14
    PUB | DOI
     
  • [12]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919005 OA
    Schulz, T., Stoye, J., & Dörr, D. (2018). GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data. BMC Genomics, 19(Suppl. 5), 308. doi:10.1186/s12864-018-4622-0
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [11]
    2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913922
    Dörr, D., Feijão, P., & Stoye, J. (2018). Family-Free Genome Comparison. In J. C. Setubal, P. Stadler, & J. Stoye (Eds.), Methods in Molecular Biology: Vol. 1704. Comparative Genomics: Methods and Protocols (pp. 331-342). New York: Springer Verlag. https://doi.org/10.1007/978-1-4939-7463-4_12
    PUB | DOI
     
  • [10]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911814
    Dörr, D., Balaban, M., Feijão, P., & Chauve, C. (2017). The gene family-free median of three. Algorithms for Molecular Biology, 12(1), 14. doi:10.1186/s13015-017-0106-z
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [9]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912492
    Luhmann, N., Dörr, D., & Chauve, C. (2017). Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes. Microbial Genomics, 3(9), e000123. doi:10.1099/mgen.0.000123
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [8]
    2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913016
    Schulz, T., Stoye, J., & Dörr, D. (2017). Finding Teams in Graphs and its Application to Spatial Gene Cluster Discovery. Proceedings of RECOMB-CG 2017, Lecture Notes in Bioinformatics, 1704, 197-212. Berlin: Springer Verlag. doi:10.1007/978-3-319-67979-2_11
    PUB | DOI
     
  • [7]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909967
    Dörr, D., Kowada, L. A. B., Soares de Araujo, F. E., Deshpande, S., Dantas, S., Moret, B. M. E., & Stoye, J. (2017). New Genome Similarity Measures based on Conserved Gene Adjacencies. Journal of Computational Biology, 24(6), 616-634. doi:10.1089/cmb.2017.0065
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [6]
    2016 | Bielefelder E-Dissertation | PUB-ID: 2902049 OA
    Dörr, D. (2016). Gene family-free genome comparison. Bielefeld: Universität Bielefeld.
    PUB | PDF
     
  • [5]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685362 OA
    Lechner, M., Hernandez-Rosales, M., Dörr, D., Wieseke, N., Thévenin, A., Stoye, J., Hartmann, R. K., et al. (2014). Orthology Detection Combining Clustering and Synteny for Very Large Datasets. PLoS ONE, 9(8), e105015. doi:10.1371/journal.pone.0105015
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [4]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2687033 OA
    Dörr, D., Stoye, J., Böcker, S., & Jahn, K. (2014). Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings. BMC Genomics, 15(Suppl. 6: Proc. of RECOMB-CG 2014), S2. doi:10.1186/1471-2164-15-S6-S2
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [3]
    2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648
    Dias Vieira Braga, M., Chauve, C., Dörr, D., Jahn, K., Stoye, J., Thévenin, A., & Wittler, R. (2013). The Potential of Family-Free Genome Comparison. In C. Chauve, N. El-Mabrouk, & E. Tannier (Eds.), Computational Biology Series: Vol. 19. Models and Algorithms for Genome Evolution (pp. 287-307). London: Springer Verlag. doi:10.1007/978-1-4471-5298-9_13
    PUB | DOI
     
  • [2]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512642 OA
    Dörr, D., Thévenin, A., & Stoye, J. (2012). Gene family assignment-free comparative genomics. BMC Bioinformatics, 13(Suppl 19: Proc. of RECOMB-CG 2012), S3. doi:10.1186/1471-2105-13-S19-S3
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [1]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560353 OA
    Dörr, D., Gronau, I., Moran, S., & Yavneh, I. (2012). Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions. Algorithms for Molecular Biology, 7(1), 22. doi:10.1186/1748-7188-7-22
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     

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