PUB - Publikationen an der Universität Bielefeld

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• [41]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964311

  Tzanakis, K., Nattkemper, T.W., Niehaus, K. & Albaum, S. (2022). MetHoS: a platform for large-scale processing, storage and analysis of metabolomics data. BMC Bioinformatics, 23(1): 267. Springer Science and Business Media LLC. doi:10.1186/s12859-022-04793-w.

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• [40]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965966

  Paggi, R.A., Albaum, S., Poetsch, A. & Cerletti, M. (2022). Proteome Turnover Analysis in Haloferax volcanii by a Heavy Isotope Multilabeling Approach. Methods in Molecular Biology, 2522, 267-286. Springer Nature. doi:10.1007/978-1-0716-2445-6_17.

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• [39]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2960640

  Luenenschloss, A., ter Veld, F., Albaum, S., Neddermann, T., Wendisch, V.F. & Poetsch, A. (2022). Functional genomics uncovers pleiotropic role of rhomboids in Corynebacterium glutamicum. Frontiers in Microbiology, 13: 771968. Frontiers Media. doi:10.3389/fmicb.2022.771968.

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• [38]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957358

  Lichtenstein, D., Mentz, A., Sprenger, H., Schmidt, F.F., Albaum, S., Kalinowski, J., Planatscher, H., Joos, T.O., Poetz, O. & Braeuning, A. (2021). A targeted transcriptomics approach for the determination of mixture effects of pesticides. Toxicology, 460: 152892. Elsevier . doi:10.1016/j.tox.2021.152892.

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• [37]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949076

  Sielemann, K., Elbeck, Z., Gärtner, A., Brodehl, A., Stanasiuk, C., Fox, H., Paluszkiewicz, L., Tiesmeier, J., Wlost, S., Gummert, J., Albaum, S., Sielemann, J., Knöll, R. & Milting, H. (2020). Distinct Myocardial Transcriptomic Profiles of Cardiomyopathies Stratified by the Mutant Genes. Genes, 11(12): 1430. MDPI AG. doi:10.3390/genes11121430.

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• [36]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950242

  Lichtenstein, D., Mentz, A., Schmidt, F.F., Luckert, C., Buhrke, T., Marx-Stoelting, P., Kalinowski, J., Albaum, S., Joos, T.O., Poetz, O. & Braeuning, A. (2020). Transcript and protein marker patterns for the identification of steatotic compounds in human HepaRG cells. Food and Chemical Toxicology, 145: 111690. Elsevier. doi:10.1016/j.fct.2020.111690.

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• [35]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941248

  Braeuning, A., Mentz, A., Schmidt, F.F., Albaum, S., Planatscher, H., Kalinowski, J., Joos, T.O., Poetz, O. & Lichtenstein, D. (2020). RNA-PROTEIN CORRELATION OF LIVER TOXICITY MARKERS IN HEPARG CELLS. EXCLI JOURNAL, 19, 135-153. Excli Journal Managing Office. doi:10.17179/excli2019-2005.

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• [34]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936490

  Seeger, B., Mentz, A., Knebel, C., Schmidt, F., Bednarz, H., Niehaus, K., Albaum, S., Kalinowski, J., Noll, T., Steinberg, P., Marx-Stoelting, P. & Heise, T. (2019). Assessment of mixture toxicity of (tri)azoles and their hepatotoxic effects in vitro by means of omics technologies. Archives of toxicology, 93(8), 2321-2333. Springer . doi:10.1007/s00204-019-02502-w.

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• [33]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933518

  Bischof, L.F., Haurat, M.F., Hoffmann, L., Albersmeier, A., Wolf, J., Neu, A., Pham, T.K., Albaum, S., Jakobi, T., Schouten, S., Neumann-Schaal, M., Wright, P.C., Kalinowski, J., Siebers, B. & Albers, S.-V. (2019). Early Response of Sulfolobus acidocaldarius to Nutrient Limitation. FRONTIERS IN MICROBIOLOGY, 9: 3201. FRONTIERS MEDIA SA. doi:10.3389/fmicb.2018.03201.

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• [32]
  

  2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2937250

  Schelletter, L., Albaum, S., Walter, S., Noll, T. & Hoffrogge, R. (2019). Clonal variations in CHO IGF signaling investigated by SILAC-based phosphoproteomics and LFQ-MS. Applied microbiology and biotechnology, 103(19), 8127-8143. Springer. doi:10.1007/s00253-019-10020-z.

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• [31]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920330

  Robledo, M., Schlueter, J.-P., Loehr, L.O., Linne, U., Albaum, S., Jimenez-Zurdo, J.I. & Becker, A. (2018). An sRNA and Cold Shock Protein Homolog-Based Feedforward Loop Post-transcriptionally Controls Cell Cycle Master Regulator CtrA. FRONTIERS IN MICROBIOLOGY, 9: 14. Frontiers Media SA. doi:10.3389/fmicb.2018.00763.

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• [30]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919012

  Jaenicke, S., Albaum, S., Blumenkamp, P., Linke, B., Stoye, J. & Goesmann, A. (2018). Flexible metagenome analysis using the MGX framework. Microbiome, 6(1): 76. Springer Science and Business Media LLC. doi:10.1186/s40168-018-0460-1.

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• [29]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919065

  Cerletti, M., Paggi, R., Troetschel, C., Celeste Ferrari, M., Guevara, C.R., Albaum, S., Poetsch, A. & De Castro, R. (2018). LonB Protease Is a Novel Regulator of Carotenogenesis Controlling Degradation of Phytoene Synthase in Haloferax volcanii. JOURNAL OF PROTEOME RESEARCH, 17(3), 1158-1171. Amer Chemical Soc. doi:10.1021/acs.jproteome.7b00809.

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• [28]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556

  Jünemann, S., Kleinbölting, N., Jaenicke, S., Henke, C., Hassa, J., Nelkner, J., Stolze, Y., Albaum, S., Schlüter, A., Goesmann, A., Sczyrba, A. & Stoye, J. (2017). Bioinformatics for NGS-based metagenomics and the application to biogas research. Journal of Biotechnology, 261(SI), 10-23. Elsevier BV. doi:10.1016/j.jbiotec.2017.08.012.

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• [27]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911396

  Müller, B., Heinrich, C., Jabs, W., Kaspar-Schönefeld, S., Schmidt, A., Wehmeier, N., Albaum, S., Baessmann, C., Noll, T. & Hoffrogge, R. (2017). Label-free protein quantification of sodium butyrate treated CHO cells by ESI-UHR-TOF-MS. Journal of Biotechnology, 257, 87-98. Elsevier BV. doi:10.1016/j.jbiotec.2017.03.032.

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• [26]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916543

  Harst, A., Albaum, S., Bojarzyn, T., Trötschel, C. & Poetsch, A. (2017). Proteomics of FACS-sorted heterogeneous Corynebacterium glutamicum populations. Journal of Proteomics, 160, 1-7. Elsevier Science. doi:10.1016/j.jprot.2017.03.010.

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• [25]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907705

  Brink, B., Seidel, A., Kleinbölting, N., Nattkemper, T.W. & Albaum, S. (2016). Omics Fusion - A Platform for Integrative Analysis of Omics Data. Journal of Integrative Bioinformatics, 13(4: SI): 296. Walter De Gruyter Gmbh. doi:10.2390/biecoll-jib-2016-296.

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• [24]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907676

  Jaenicke, S., Bunk, B., Wibberg, D., Spröer, C., Hersemann, L., Blom, J., Winkler, A., Schatschneider, S., Albaum, S., Kölliker, R., Goesmann, A., Pühler, A., Overmann, J. & Vorhölter, F.-J. (2016). Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T). Genome Announcements, 4(6): e01334-16. American Society for Microbiology. doi:10.1128/genomea.01334-16.

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• [23]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234

  Ortseifen, V., Stolze, Y., Maus, I., Sczyrba, A., Bremges, A., Albaum, S., Jaenicke, S., Fracowiak, J., Pühler, A. & Schlüter, A. (2016). An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant. Journal of Biotechnology, 231, 268-279. Elsevier BV. doi:10.1016/j.jbiotec.2016.06.014.

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• [22]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035

  Arnold, M., Wibberg, D., Blom, J., Schatschneider, S., Winkler, A., Kutter, Y., Rückert, C., Albersmeier, A., Albaum, S., Goesmann, A., Zange, S., Heesemann, J., Pühler, A., Hogardt, M. & Vorhölter, F.-J. (2015). Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum. Genome announcements, 3(4): e00680-15. American Society for Microbiology. doi:10.1128/genomeA.00680-15.

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• [21]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722138

  Kessler, N., Bonte, A., Albaum, S., Mäder, P., Messmer, M., Goesmann, A., Niehaus, K., Langenkämper, G. & Nattkemper, T.W. (2015). Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform. Frontiers in Bioinformatics and Computational Biology, 3: 35. Frontiers Media SA. doi:10.3389/fbioe.2015.00035.

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• [20]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901297

  Wibberg, D., Rupp, O., Blom, J., Jelonek, L., Kröber, M., Verwaaijen, B., Goesmann, A., Albaum, S., Grosch, R., Pühler, A. & Schlüter, A. (2015). Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates. Plos One, 10(12): e0144769. Public Library Science. doi:10.1371/journal.pone.0144769.

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• [19]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2718767

  Wingens, M., Gätgens, J., Schmidt, A., Albaum, S., Büntemeyer, H., Noll, T. & Hoffrogge, R. (2015). 2D-DIGE screening of high-productive CHO cells under glucose limitation — Basic changes in the proteome equipment and hints for epigenetic effects. Journal of Biotechnology, 201, 86-97. Elsevier. doi:10.1016/j.jbiotec.2014.01.005.

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• [18]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758122

  Wibberg, D., Alkhateeb, R., Winkler, A., Albersmeier, A., Schatschneider, S., Albaum, S., Niehaus, K., Hublik, G., Pühler, A. & Vorhölter, F.-J. (2015). Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951). Journal of Biotechnology, 204, 45-46. Elsevier. doi:10.1016/j.jbiotec.2015.03.026.

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• [17]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656819

  Wippermann, A., Klausing, S., Rupp, O., Albaum, S., Büntemeyer, H., Noll, T. & Hoffrogge, R. (2014). Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells. Applied Microbiology and Biotechnology, 98(2), 579-589. Springer Science + Business Media. doi:10.1007/s00253-013-5282-2.

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• [16]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773

  Jünemann, S., Prior, K., Albersmeier, A., Albaum, S., Kalinowski, J., Goesmann, A., Stoye, J. & Harmsen, D. (2014). GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers. PLOS ONE, 9(9): e107014. Public Library of Science (PLoS). doi:10.1371/journal.pone.0107014.

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• [15]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706029

  Kessler, N., Walter, F., Persicke, M., Albaum, S., Kalinowski, J., Goesmann, A., Niehaus, K. & Nattkemper, T.W. (2014). ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis. PLoS ONE, 9(11): e113909. Public Library of Science (PLoS). doi:10.1371/journal.pone.0113909.

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• [14]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552

  Becker, J., Timmermann, C., Rupp, O., Albaum, S., Brinkrolf, K., Goesmann, A., Pühler, A., Tauch, A. & Noll, T. (2014). Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.). Journal of biotechnology, 178, 23-31. Elsevier BV. doi:10.1016/j.jbiotec.2014.02.021.

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• [13]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2561776

  Trötschel, C., Albaum, S. & Poetsch, A. (2013). Proteome turnover in bacteria: current status for Corynebacterium glutamicum and related bacteria. Microbial biotechnology, 6(6), 708-719. Wiley-Blackwell. doi:10.1111/1751-7915.12035.

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• [12]
  

  2012 | Bielefelder E-Dissertation | PUB-ID: 2547531

  Albaum, S. (2012). QuPE - An integrated bioinformatics platform for quantitative proteomics. Bielefeld: Universität Bielefeld.

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• [11]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232

  Trötschel, C., Albaum, S., Wolff, D., Schröder, S., Goesmann, A., Nattkemper, T.W. & Poetsch, A. (2012). Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation. Molecular & Cellular Proteomics, 11(8), 512-526. American Society for Biochemistry & Molecular Biology (ASBMB). doi:10.1074/mcp.M111.014134.

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• [10]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063

  Albaum, S., Hahne, H., Otto, A., Haußmann, U., Becher, D., Poetsch, A., Goesmann, A. & Nattkemper, T.W. (2011). A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study. Proteome Science, 9(1): 30. Springer Science + Business Media. doi:10.1186/1477-5956-9-30.

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• [9]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800

  Toepel, J., Albaum, S., Arvidsson, S., Goesmann, A., La Russa, M., Rogge, K. & Kruse, O. (2011). Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii. BMC Genomics, 12(1): 579. Springer Science + Business Media. doi:10.1186/1471-2164-12-579.

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• [8]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813

  Neuweger, H., Persicke, M., Albaum, S., Bekel, T., Dondrup, M., Hüser, A.T., Winnebald, J., Schneider, J., Kalinowski, J. & Goesmann, A. (2009). Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example. BMC Systems Biology, 3(1): 82. Springer Science + Business Media. doi:10.1186/1752-0509-3-82.

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• [7]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187

  Blom, J., Albaum, S., Doppmeier, D., Pühler, A., Vorhölter, F.-J., Zakrzewski, M. & Goesmann, A. (2009). EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics, 10(1): 154. Springer Science + Business Media. doi:10.1186/1471-2105-10-154.

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• [6]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321

  Dondrup, M., Albaum, S., Griebel, T., Henckel, K., Jünemann, S., Kahlke, T., Kleindt, C.K., Kuester, H., Linke, B., Mertens, D., Mittard-Runte, V., Neuweger, H., Runte, K.J., Tauch, A., Tille, F., Pühler, A. & Goesmann, A. (2009). EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics, 10(1): 50. Springer Science + Business Media. doi:10.1186/1471-2105-10-50.

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• [5]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531

  Albaum, S., Neuweger, H., Fraenzel, B., Lange, S., Mertens, D., Troetschel, C., Wolters, D., Kalinowski, J., Nattkemper, T.W. & Goesmann, A. (2009). Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics, 25(23), 3128-3134. Oxford University Press (OUP). doi:10.1093/bioinformatics/btp568.

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• [4]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699

  Neuweger, H., Albaum, S., Dondrup, M., Persicke, M., Watt, T., Niehaus, K., Stoye, J. & Goesmann, A. (2008). MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics, 24(23), 2726-2732. OXFORD UNIV PRESS. doi:10.1093/bioinformatics/btn452.

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• [3]
  

  2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381

  Albaum, S., Neuweger, H., Lange, S., Mertens, D., Runte, K., Kalinowski, J., Nattkemper, T.W. & Goesmann, A. (2008). ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract). HUPO 7th Annual World Congress.

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• [2]
  

  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754

  Neuweger, H., Baumbach, J., Albaum, S., Bekel, T., Dondrup, M., Hüser, A.T., Kalinowski, J., Oehm, S., Pühler, A., Rahmann, S., Weile, J. & Goesmann, A. (2007). CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Systems Biology, 1(1): 55. Springer Science and Business Media LLC. doi:10.1186/1752-0509-1-55.

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• [1]
  

  2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302

  Bartels, D., Kespohl, S., Albaum, S., Drüke, T., Goesmann, A., Herold, J., Kaiser, O., Pühler, A., Pfeiffer, F., Raddatz, G., Stoye, J., Meyer, F. & Schuster, S.C. (2005). BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics, 21(7), 853-859. Oxford University Press. doi:10.1093/bioinformatics/bti091.

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