Stefan Albaum

stefan.albaum@uni-bielefeld.de
ORCID logo https://orcid.org/0000-0002-1827-9914

PEVZ-ID
181902

41 Publikationen

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  • [41]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964311 OA
    K. Tzanakis, et al., “MetHoS: a platform for large-scale processing, storage and analysis of metabolomics data”, BMC Bioinformatics, vol. 23, 2022, : 267.
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  • [40]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965966
    R.A. Paggi, et al., “Proteome Turnover Analysis in Haloferax volcanii by a Heavy Isotope Multilabeling Approach”, Methods in Molecular Biology, vol. 2522, 2022, pp. 267-286.
    PUB | DOI | PubMed | Europe PMC
     
  • [39]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2960640 OA
    A. Luenenschloss, et al., “Functional genomics uncovers pleiotropic role of rhomboids in Corynebacterium glutamicum”, Frontiers in Microbiology, vol. 13, 2022, : 771968.
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  • [38]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957358
    D. Lichtenstein, et al., “A targeted transcriptomics approach for the determination of mixture effects of pesticides”, Toxicology, vol. 460, 2021, : 152892.
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  • [37]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949076 OA
    K. Sielemann, et al., “Distinct Myocardial Transcriptomic Profiles of Cardiomyopathies Stratified by the Mutant Genes”, Genes, vol. 11, 2020, : 1430.
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  • [36]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950242
    D. Lichtenstein, et al., “Transcript and protein marker patterns for the identification of steatotic compounds in human HepaRG cells”, Food and Chemical Toxicology, vol. 145, 2020, : 111690.
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  • [35]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941248
    A. Braeuning, et al., “RNA-PROTEIN CORRELATION OF LIVER TOXICITY MARKERS IN HEPARG CELLS”, EXCLI JOURNAL, vol. 19, 2020, pp. 135-153.
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  • [34]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936490
    B. Seeger, et al., “Assessment of mixture toxicity of (tri)azoles and their hepatotoxic effects in vitro by means of omics technologies.”, Archives of toxicology, vol. 93, 2019, pp. 2321-2333.
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  • [33]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933518
    L.F. Bischof, et al., “Early Response of Sulfolobus acidocaldarius to Nutrient Limitation”, FRONTIERS IN MICROBIOLOGY, vol. 9, 2019, : 3201.
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  • [32]
    2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2937250
    L. Schelletter, et al., “Clonal variations in CHO IGF signaling investigated by SILAC-based phosphoproteomics and LFQ-MS”, Applied microbiology and biotechnology, vol. 103, 2019, pp. 8127-8143.
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  • [31]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920330
    M. Robledo, et al., “An sRNA and Cold Shock Protein Homolog-Based Feedforward Loop Post-transcriptionally Controls Cell Cycle Master Regulator CtrA”, FRONTIERS IN MICROBIOLOGY, vol. 9, 2018, : 14.
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  • [30]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919012
    S. Jaenicke, et al., “Flexible metagenome analysis using the MGX framework”, Microbiome, vol. 6, 2018, : 76.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [29]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919065
    M. Cerletti, et al., “LonB Protease Is a Novel Regulator of Carotenogenesis Controlling Degradation of Phytoene Synthase in Haloferax volcanii”, JOURNAL OF PROTEOME RESEARCH, vol. 17, 2018, pp. 1158-1171.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [28]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556
    S. Jünemann, et al., “Bioinformatics for NGS-based metagenomics and the application to biogas research”, Journal of Biotechnology, vol. 261, 2017, pp. 10-23.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [27]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911396
    B. Müller, et al., “Label-free protein quantification of sodium butyrate treated CHO cells by ESI-UHR-TOF-MS”, Journal of Biotechnology, vol. 257, 2017, pp. 87-98.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [26]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916543
    A. Harst, et al., “Proteomics of FACS-sorted heterogeneous Corynebacterium glutamicum populations”, Journal of Proteomics, vol. 160, 2017, pp. 1-7.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [25]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907705
    B. Brink, et al., “Omics Fusion - A Platform for Integrative Analysis of Omics Data”, Journal of Integrative Bioinformatics, vol. 13, 2016, : 296.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [24]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907676 OA
    S. Jaenicke, et al., “Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T)”, Genome Announcements, vol. 4, 2016, : e01334-16.
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  • [23]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234
    V. Ortseifen, et al., “An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant”, Journal of Biotechnology, vol. 231, 2016, pp. 268-279.
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  • [22]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035
    M. Arnold, et al., “Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum”, Genome announcements, vol. 3, 2015, : e00680-15.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [21]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722138 OA
    N. Kessler, et al., “Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform”, Frontiers in Bioinformatics and Computational Biology, vol. 3, 2015, : 35.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [20]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901297 OA
    D. Wibberg, et al., “Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates”, Plos One, vol. 10, 2015, : e0144769.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [19]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2718767
    M. Wingens, et al., “2D-DIGE screening of high-productive CHO cells under glucose limitation — Basic changes in the proteome equipment and hints for epigenetic effects”, Journal of Biotechnology, vol. 201, 2015, pp. 86-97.
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  • [18]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758122
    D. Wibberg, et al., “Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951)”, Journal of Biotechnology, vol. 204, 2015, pp. 45-46.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [17]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656819
    A. Wippermann, et al., “Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells”, Applied Microbiology and Biotechnology, vol. 98, 2014, pp. 579-589.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [16]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773
    S. Jünemann, et al., “GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers”, PLOS ONE, vol. 9, 2014, : e107014.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [15]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706029 OA
    N. Kessler, et al., “ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis”, PLoS ONE, vol. 9, 2014, : e113909.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [14]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552
    J. Becker, et al., “Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.)”, Journal of biotechnology, vol. 178, 2014, pp. 23-31.
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  • [13]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2561776
    C. Trötschel, S. Albaum, and A. Poetsch, “Proteome turnover in bacteria: current status for Corynebacterium glutamicum and related bacteria”, Microbial biotechnology, vol. 6, 2013, pp. 708-719.
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  • [12]
    2012 | Bielefelder E-Dissertation | PUB-ID: 2547531 OA
    S. Albaum, QuPE - An integrated bioinformatics platform for quantitative proteomics, Bielefeld: Universität Bielefeld, 2012.
    PUB | PDF
     
  • [11]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232
    C. Trötschel, et al., “Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation”, Molecular & Cellular Proteomics, vol. 11, 2012, pp. 512-526.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [10]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063 OA
    S. Albaum, et al., “A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study”, Proteome Science, vol. 9, 2011, : 30.
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  • [9]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800 OA
    J. Toepel, et al., “Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii”, BMC Genomics, vol. 12, 2011, : 579.
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  • [8]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813 OA
    H. Neuweger, et al., “Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example”, BMC Systems Biology, vol. 3, 2009, : 82.
    PUB | PDF | DOI | PubMed | Europe PMC
     
  • [7]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187 OA
    J. Blom, et al., “EDGAR: a software framework for the comparative analysis of prokaryotic genomes”, BMC Bioinformatics, vol. 10, 2009, : 154.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [6]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321 OA
    M. Dondrup, et al., “EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data”, BMC Bioinformatics, vol. 10, 2009, : 50.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [5]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
    S. Albaum, et al., “Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments”, Bioinformatics, vol. 25, 2009, pp. 3128-3134.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [4]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
    H. Neuweger, et al., “MeltDB: a software platform for the analysis and integration of metabolomics experiment data”, Bioinformatics, vol. 24, 2008, pp. 2726-2732.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [3]
    2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
    S. Albaum, et al., “ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)”, HUPO 7th Annual World Congress, 2008.
    PUB
     
  • [2]
    2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754 OA
    H. Neuweger, et al., “CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data”, BMC Systems Biology, vol. 1, 2007, : 55.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [1]
    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302 OA
    D. Bartels, et al., “BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison”, Bioinformatics, vol. 21, 2005, pp. 853-859.
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