41 Publikationen
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2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964311Tzanakis, Konstantinos, Nattkemper, Tim Wilhelm, Niehaus, Karsten, and Albaum, Stefan. 2022. “MetHoS: a platform for large-scale processing, storage and analysis of metabolomics data”. BMC Bioinformatics 23 (1): 267.
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2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965966Paggi, Roberto A, Albaum, Stefan, Poetsch, Ansgar, and Cerletti, Micaela. 2022. “Proteome Turnover Analysis in Haloferax volcanii by a Heavy Isotope Multilabeling Approach”. Methods in Molecular Biology 2522: 267-286.
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2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2960640Luenenschloss, Andrea, ter Veld, Frank, Albaum, Stefan, Neddermann, Tobias, Wendisch, Volker F., and Poetsch, Ansgar. 2022. “Functional genomics uncovers pleiotropic role of rhomboids in Corynebacterium glutamicum”. Frontiers in Microbiology 13: 771968.
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957358Lichtenstein, Dajana, Mentz, Almut, Sprenger, Heike, Schmidt, Felix F., Albaum, Stefan, Kalinowski, Jörn, Planatscher, Hannes, Joos, Thomas O., Poetz, Oliver, and Braeuning, Albert. 2021. “A targeted transcriptomics approach for the determination of mixture effects of pesticides”. Toxicology 460: 152892.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949076Sielemann, Katharina, Elbeck, Zaher, Gärtner, Anna, Brodehl, Andreas, Stanasiuk, Caroline, Fox, Henrik, Paluszkiewicz, Lech, et al. 2020. “Distinct Myocardial Transcriptomic Profiles of Cardiomyopathies Stratified by the Mutant Genes”. Genes 11 (12): 1430.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950242Lichtenstein, Dajana, Mentz, Almut, Schmidt, Felix F., Luckert, Claudia, Buhrke, Thorsten, Marx-Stoelting, Philip, Kalinowski, Jörn, et al. 2020. “Transcript and protein marker patterns for the identification of steatotic compounds in human HepaRG cells”. Food and Chemical Toxicology 145: 111690.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941248Braeuning, Albert, Mentz, Almut, Schmidt, Felix F., Albaum, Stefan, Planatscher, Hannes, Kalinowski, Jörn, Joos, Thomas O., Poetz, Oliver, and Lichtenstein, Dajana. 2020. “RNA-PROTEIN CORRELATION OF LIVER TOXICITY MARKERS IN HEPARG CELLS”. EXCLI JOURNAL 19: 135-153.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936490Seeger, Bettina, Mentz, Almut, Knebel, Constanze, Schmidt, Flavia, Bednarz, Hanna, Niehaus, Karsten, Albaum, Stefan, et al. 2019. “Assessment of mixture toxicity of (tri)azoles and their hepatotoxic effects in vitro by means of omics technologies.”. Archives of toxicology 93 (8): 2321-2333.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933518Bischof, Lisa F., Haurat, M. Florencia, Hoffmann, Lena, Albersmeier, Andreas, Wolf, Jacqueline, Neu, Astrid, Pham, Trong Khoa, et al. 2019. “Early Response of Sulfolobus acidocaldarius to Nutrient Limitation”. FRONTIERS IN MICROBIOLOGY 9: 3201.
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2937250Schelletter, Louise, Albaum, Stefan, Walter, Stefan, Noll, Thomas, and Hoffrogge, Raimund. 2019. “Clonal variations in CHO IGF signaling investigated by SILAC-based phosphoproteomics and LFQ-MS”. Applied microbiology and biotechnology 103 (19): 8127-8143.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920330Robledo, Marta, Schlueter, Jan-Philip, Loehr, Lars O., Linne, Uwe, Albaum, Stefan, Jimenez-Zurdo, Jose I., and Becker, Anke. 2018. “An sRNA and Cold Shock Protein Homolog-Based Feedforward Loop Post-transcriptionally Controls Cell Cycle Master Regulator CtrA”. FRONTIERS IN MICROBIOLOGY 9: 14.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919012Jaenicke, Sebastian, Albaum, Stefan, Blumenkamp, Patrick, Linke, Burkhard, Stoye, Jens, and Goesmann, Alexander. 2018. “Flexible metagenome analysis using the MGX framework”. Microbiome 6 (1): 76.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919065Cerletti, Micaela, Paggi, Roberto, Troetschel, Christian, Celeste Ferrari, Maria, Guevara, Carina Ramallo, Albaum, Stefan, Poetsch, Ansgar, and De Castro, Rosana. 2018. “LonB Protease Is a Novel Regulator of Carotenogenesis Controlling Degradation of Phytoene Synthase in Haloferax volcanii”. JOURNAL OF PROTEOME RESEARCH 17 (3): 1158-1171.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556Jünemann, Sebastian, Kleinbölting, Nils, Jaenicke, Sebastian, Henke, Christian, Hassa, Julia, Nelkner, Johanna, Stolze, Yvonne, et al. 2017. “Bioinformatics for NGS-based metagenomics and the application to biogas research”. Journal of Biotechnology 261 (SI): 10-23.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911396Müller, B., Heinrich, C., Jabs, W., Kaspar-Schönefeld, S., Schmidt, Anica, Wehmeier, Nadine, Albaum, Stefan, Baessmann, C., Noll, Thomas, and Hoffrogge, Raimund. 2017. “Label-free protein quantification of sodium butyrate treated CHO cells by ESI-UHR-TOF-MS”. Journal of Biotechnology 257: 87-98.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916543Harst, Andreas, Albaum, Stefan, Bojarzyn, Tanja, Trötschel, Christian, and Poetsch, Ansgar. 2017. “Proteomics of FACS-sorted heterogeneous Corynebacterium glutamicum populations”. Journal of Proteomics 160: 1-7.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907705Brink, Benedikt, Seidel, Annica, Kleinbölting, Nils, Nattkemper, Tim Wilhelm, and Albaum, Stefan. 2016. “Omics Fusion - A Platform for Integrative Analysis of Omics Data”. Journal of Integrative Bioinformatics 13 (4: SI): 296.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907676Jaenicke, Sebastian, Bunk, Boyke, Wibberg, Daniel, Spröer, Cathrin, Hersemann, Lena, Blom, Jochen, Winkler, Anika, et al. 2016. “Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T)”. Genome Announcements 4 (6): e01334-16.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234Ortseifen, Vera, Stolze, Yvonne, Maus, Irena, Sczyrba, Alexander, Bremges, Andreas, Albaum, Stefan, Jaenicke, Sebastian, Fracowiak, Jochen, Pühler, Alfred, and Schlüter, Andreas. 2016. “An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant”. Journal of Biotechnology 231: 268-279.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035Arnold, Martin, Wibberg, Daniel, Blom, Jochen, Schatschneider, Sarah, Winkler, Anika, Kutter, Yvonne, Rückert, Christian, et al. 2015. “Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum”. Genome announcements 3 (4): e00680-15.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722138Kessler, Nikolas, Bonte, Anja, Albaum, Stefan, Mäder, Paul, Messmer, Monika, Goesmann, Alexander, Niehaus, Karsten, Langenkämper, Georg, and Nattkemper, Tim Wilhelm. 2015. “Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform”. Frontiers in Bioinformatics and Computational Biology 3: 35.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901297Wibberg, Daniel, Rupp, Oliver, Blom, Jochen, Jelonek, Lukas, Kröber, Magdalena, Verwaaijen, Bart, Goesmann, Alexander, et al. 2015. “Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates”. Plos One 10 (12): e0144769.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2718767Wingens, Marc, Gätgens, Jochem, Schmidt, Anica, Albaum, Stefan, Büntemeyer, Heino, Noll, Thomas, and Hoffrogge, Raimund. 2015. “2D-DIGE screening of high-productive CHO cells under glucose limitation — Basic changes in the proteome equipment and hints for epigenetic effects”. Journal of Biotechnology 201: 86-97.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758122Wibberg, Daniel, Alkhateeb, Rabeaa, Winkler, Anika, Albersmeier, Andreas, Schatschneider, Sarah, Albaum, Stefan, Niehaus, Karsten, Hublik, Gerd, Pühler, Alfred, and Vorhölter, Frank-Jörg. 2015. “Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951)”. Journal of Biotechnology 204: 45-46.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656819Wippermann, Anna, Klausing, Sandra, Rupp, Oliver, Albaum, Stefan, Büntemeyer, Heino, Noll, Thomas, and Hoffrogge, Raimund. 2014. “Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells”. Applied Microbiology and Biotechnology 98 (2): 579-589.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773Jünemann, Sebastian, Prior, Karola, Albersmeier, Andreas, Albaum, Stefan, Kalinowski, Jörn, Goesmann, Alexander, Stoye, Jens, and Harmsen, Dag. 2014. “GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers”. PLOS ONE 9 (9): e107014.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706029Kessler, Nikolas, Walter, Frederik, Persicke, Marcus, Albaum, Stefan, Kalinowski, Jörn, Goesmann, Alexander, Niehaus, Karsten, and Nattkemper, Tim Wilhelm. 2014. “ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis”. PLoS ONE 9 (11): e113909.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552Becker, Jennifer, Timmermann, Christina, Rupp, Oliver, Albaum, Stefan, Brinkrolf, Karina, Goesmann, Alexander, Pühler, Alfred, Tauch, Andreas, and Noll, Thomas. 2014. “Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.)”. Journal of biotechnology 178: 23-31.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2561776Trötschel, Christian, Albaum, Stefan, and Poetsch, Ansgar. 2013. “Proteome turnover in bacteria: current status for Corynebacterium glutamicum and related bacteria”. Microbial biotechnology 6 (6): 708-719.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232Trötschel, C, Albaum, Stefan, Wolff, D, Schröder, S, Goesmann, Alexander, Nattkemper, Tim Wilhelm, and Poetsch, A. 2012. “Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation”. Molecular & Cellular Proteomics 11 (8): 512-526.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063Albaum, Stefan, Hahne, H., Otto, A., Haußmann, U., Becher, D., Poetsch, A., Goesmann, Alexander, and Nattkemper, Tim Wilhelm. 2011. “A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study”. Proteome Science 9 (1): 30.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800Toepel, Jörg, Albaum, Stefan, Arvidsson, S., Goesmann, Alexander, La Russa, Marco, Rogge, Kristin, and Kruse, Olaf. 2011. “Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii”. BMC Genomics 12 (1): 579.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813Neuweger, Heiko, Persicke, Marcus, Albaum, Stefan, Bekel, Thomas, Dondrup, Michael, Hüser, Andrea T., Winnebald, Jörn, Schneider, Jessica, Kalinowski, Jörn, and Goesmann, Alexander. 2009. “Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example”. BMC Systems Biology 3 (1): 82.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187Blom, Jochen, Albaum, Stefan, Doppmeier, Daniel, Pühler, Alfred, Vorhölter, Frank-Jörg, Zakrzewski, Martha, and Goesmann, Alexander. 2009. “EDGAR: a software framework for the comparative analysis of prokaryotic genomes”. BMC Bioinformatics 10 (1): 154.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321Dondrup, Michael, Albaum, Stefan, Griebel, Thasso, Henckel, Kolja, Jünemann, Sebastian, Kahlke, Tim, Kleindt, Christiane Katja, et al. 2009. “EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data”. BMC Bioinformatics 10 (1): 50.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531Albaum, Stefan, Neuweger, Heiko, Fraenzel, Benjamin, Lange, Sita, Mertens, Dominik, Troetschel, Christian, Wolters, Dirk, Kalinowski, Jörn, Nattkemper, Tim Wilhelm, and Goesmann, Alexander. 2009. “Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments”. Bioinformatics 25 (23): 3128-3134.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699Neuweger, Heiko, Albaum, Stefan, Dondrup, Michael, Persicke, Marcus, Watt, Tony, Niehaus, Karsten, Stoye, Jens, and Goesmann, Alexander. 2008. “MeltDB: a software platform for the analysis and integration of metabolomics experiment data”. Bioinformatics 24 (23): 2726-2732.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381Albaum, Stefan, Neuweger, Heiko, Lange, Sita, Mertens, Dominik, Runte, Kai, Kalinowski, Jörn, Nattkemper, Tim Wilhelm, and Goesmann, Alexander. 2008. “ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)”. In HUPO 7th Annual World Congress.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754Neuweger, Heiko, Baumbach, Jan, Albaum, Stefan, Bekel, Thomas, Dondrup, Michael, Hüser, Andrea T., Kalinowski, Jörn, et al. 2007. “CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data”. BMC Systems Biology 1 (1): 55.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302Bartels, Daniela, Kespohl, Sebastian, Albaum, Stefan, Drüke, Tanja, Goesmann, Alexander, Herold, Julia, Kaiser, Olaf, et al. 2005. “BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison”. Bioinformatics 21 (7): 853-859.