PUB - Publikationen an der Universität Bielefeld

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• [24]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694652

  Bonte, A., Neuweger, H., Goesmann, A., Thonar, C., Mäder, P., Langenkämper, G. & Niehaus, K. (2014). Metabolite profiling on wheat grain to enable a distinction of samples from organic and conventional farming systems. Journal of the science of food and agriculture, 94(13), 2605-2612. Wiley-Blackwell. doi:10.1002/jsfa.6566.

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• [23]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699819

  Schatschneider, S., Huber, C., Neuweger, H., Watt, T., Pühler, A., Eisenreich, W., Wittmann, C., Niehaus, K. & Vorhölter, F.-J. (2014). Metabolic flux pattern of glucose utilization by Xanthomonas campestris pv. campestris: prevalent role of the Entner-Doudoroff pathway and minor fluxes through the pentose phosphate pathway and glycolysis. Molecular BioSystems, 10(10), 2663-2676. The Royal Society Of Chemistry. doi:10.1039/c4mb00198b.

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• [22]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517239

  Hoffmann, N., Keck, M., Neuweger, H., Wilhelm, M., Högy, P., Niehaus, K. & Stoye, J. (2012). Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets. BMC Bioinformatics, 13(1): 21. Springer Science + Business Media. doi:10.1186/1471-2105-13-21.

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• [21]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500990

  Rose, M.T., Rose, T.J., Pariasca-Tanaka, J., Yoshihashi, T., Neuweger, H., Goesmann, A., Frei, M. & Wissuwa, M. (2012). Root metabolic response of rice (Oryza sativa L.) genotypes with contrasting tolerance to zinc deficiency and bicarbonate excess. Planta, 236(4), 959-973. Springer Science + Business Media. doi:10.1007/s00425-012-1648-4.

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• [20]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255

  Persicke, M., Rückert, C., Plassmeier, J., Stutz, L., Kessler, N., Kalinowski, J., Goesmann, A. & Neuweger, H. (2012). MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example. Metabolomics, 8(2), 310-322. Springer Science + Business Media. doi:10.1007/s11306-011-0311-6.

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• [19]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944855

  Persicke, M., Plassmeier, J., Neuweger, H., Rückert, C., Pühler, A. & Kalinowski, J. (2011). Erratum to “Size exclusion chromatography—An improved method to harvest Corynebacterium glutamicum cells for the analysis of cytosolic metabolites” [J. Biotechnol. 154 (2–3) (2011) 171–178]. Journal of Biotechnology, 155(2), 266-267. Elsevier. doi:10.1016/j.jbiotec.2011.06.006.

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• [18]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289494

  Persicke, M., Plassmeier, J., Neuweger, H., Rückert, C., Pühler, A. & Kalinowski, J. (2011). Size exclusion chromatography-An improved method to harvest Corynebacterium glutamicum cells for the analysis of cytosolic metabolites. Journal of Biotechnology, 154(2-3), 171-178. Elsevier BV. doi:10.1016/j.jbiotec.2010.08.016.

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• [17]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445

  Schneider, J., Blom, J., Jaenicke, S., Linke, B., Brinkrolf, K., Neuweger, H., Tauch, A. & Goesmann, A. (2011). RAPYD - Rapid Annotation Platform for Yeast Data. Journal of Biotechnology, 155(1), 118-126. Elsevier BV. doi:10.1016/j.jbiotec.2010.10.076.

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• [16]
  

  2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892

  Schneiker-Bekel, S., Wibberg, D., Bekel, T., Blom, J., Linke, B., Neuweger, H., Stiens, M., Vorhölter, F.-J., Weidner, S., Goesmann, A., Pühler, A. & Schlüter, A. (In Press). The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome. Journal of Biotechnology, 155(1), 20-33. Elsevier BV. doi:10.1016/j.jbiotec.2010.12.018.

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• [15]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929692

  Schneider, J., Vorhölter, F.-J., Trost, E., Blom, J., Musa, Y.R., Neuweger, H., Niehaus, K., Schatschneider, S., Tauch, A. & Goesmann, A. (2010). CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks. Genetics and Molecular Research, 9(3), 1660-1672. Genetics and Molecular Research. doi:10.4238/vol9-3gmr901.

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• [14]
  

  2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907

  Mittard-Runte, V., Bekel, T., Blom, J., Dondrup, M., Henckel, K., Jaenicke, S., Krause, L., Linke, B., Neuweger, H., Schneiker-Bekel, S. & Goesmann, A. (2010). Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions. In J.M. Cock, K. Tessmar-Raible, C. Boyen & F. Viard (Hrsg.), Introduction to Marine Genomics (Advances in Marine Genomics) (S. 315-396). Netherlands: Springer Netherlands. doi:10.1007/978-90-481-8639-6_9.

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• [13]
  

  2009 | Bielefelder E-Dissertation | PUB-ID: 2301318

  Neuweger, H. (2009). MeltDB : a software platform for the analysis and integration of metabolomics experiment data. Bielefeld (Germany): Bielefeld University.

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• [12]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813

  Neuweger, H., Persicke, M., Albaum, S., Bekel, T., Dondrup, M., Hüser, A.T., Winnebald, J., Schneider, J., Kalinowski, J. & Goesmann, A. (2009). Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example. BMC Systems Biology, 3(1): 82. Springer Science + Business Media. doi:10.1186/1752-0509-3-82.

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• [11]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321

  Dondrup, M., Albaum, S., Griebel, T., Henckel, K., Jünemann, S., Kahlke, T., Kleindt, C.K., Kuester, H., Linke, B., Mertens, D., Mittard-Runte, V., Neuweger, H., Runte, K.J., Tauch, A., Tille, F., Pühler, A. & Goesmann, A. (2009). EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics, 10(1): 50. Springer Science + Business Media. doi:10.1186/1471-2105-10-50.

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• [10]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531

  Albaum, S., Neuweger, H., Fraenzel, B., Lange, S., Mertens, D., Troetschel, C., Wolters, D., Kalinowski, J., Nattkemper, T.W. & Goesmann, A. (2009). Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics, 25(23), 3128-3134. Oxford University Press (OUP). doi:10.1093/bioinformatics/btp568.

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• [9]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447

  Bekel, T., Henckel, K., Küster, H., Meyer, F., Mittard-Runte, V., Neuweger, H., Paarmann, D., Rupp, O., Zakrzewski, M., Pühler, A., Stoye, J. & Goesmann, A. (2009). The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies. Journal of Biotechnology, 140(1-2), 3-12. Elsevier BV. doi:10.1016/j.jbiotec.2009.01.006.

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• [8]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699

  Neuweger, H., Albaum, S., Dondrup, M., Persicke, M., Watt, T., Niehaus, K., Stoye, J. & Goesmann, A. (2008). MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics, 24(23), 2726-2732. OXFORD UNIV PRESS. doi:10.1093/bioinformatics/btn452.

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• [7]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009

  Krause, L., Diaz, N.N., Edwards, R.A., Gartemann, K.-H., Krömeke, H., Neuweger, H., Pühler, A., Runte, K.J., Schlüter, A., Stoye, J., Szczepanowski, R., Tauch, A. & Goesmann, A. (2008). Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. JOURNAL OF BIOTECHNOLOGY, 136(1-2), 91-101. ELSEVIER SCIENCE BV. doi:10.1016/j.jbiotec.2008.06.003.

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• [6]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987

  Schlüter, A., Bekel, T., Diaz, N.N., Dondrup, M., Eichenlaub, R., Gartemann, K.-H., Krahn, I., Krause, L., Kroemeke, H., Kruse, O., Mussgnug, J.H., Neuweger, H., Niehaus, K., Pühler, A., Runte, K.J., Szczepanowski, R., Tauch, A., Tilker, A., Viehöver, P. & Goesmann, A. (2008). The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology. Journal of Biotechnology, 136(1-2), 77-90. Elsevier. doi:10.1016/j.jbiotec.2008.05.008.

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• [5]
  

  2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381

  Albaum, S., Neuweger, H., Lange, S., Mertens, D., Runte, K., Kalinowski, J., Nattkemper, T.W. & Goesmann, A. (2008). ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract). HUPO 7th Annual World Congress.

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• [4]
  

  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754

  Neuweger, H., Baumbach, J., Albaum, S., Bekel, T., Dondrup, M., Hüser, A.T., Kalinowski, J., Oehm, S., Pühler, A., Rahmann, S., Weile, J. & Goesmann, A. (2007). CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Systems Biology, 1(1): 55. Springer Science and Business Media LLC. doi:10.1186/1752-0509-1-55.

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• [3]
  

  2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2382786

  Linke, B., McHardy, A.C., Neuweger, H., Krause, L. & Meyer, F. (2006). The REGANOR gene prediction server for prokaryotic genomes and a database of high quality gene predictions for prokaryotes. Applied Bioinformatics, 5(3), 193-198. Springer Science and Business Media LLC. doi:10.2165/00822942-200605030-00008.

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• [2]
  

  2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773652

  Overbeek, R., Begley, T., Butler, R.M., Choudhuri, J.V., Chuang, H.-Y., Cohoon, M., Crécy-Lagard, V. de, Diaz, N.N., Disz, T., Edwards, R., Fonstein, M., Frank, E.D., Gerdes, S., Glass, E.M., Goesmann, A., Hanson, A., Iwata-Reuyl, D., Jensen, R., Jamshidi, N., Krause, L., Kubal, M., Larsen, N., Linke, B., McHardy, A.C., Meyer, F., Neuweger, H., Olsen, G., Olson, R., Osterman, A., Portnoy, V., Pusch, G.D., Rodionov, D.A., Rückert, C., Steiner, J., Stevens, R., Thiele, I., Vassieva, O., Ye, Y., Zagnitko, O. & Vonstein, V. (2005). The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes. Nucleic Acids Research, 33(17), 5691-5702. Oxford University Press (OUP). doi:10.1093/nar/gki866.

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• [1]
  

  2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773644

  Goesmann, A., Linke, B., Bartels, D., Dondrup, M., Krause, L., Neuweger, H., Oehm, S., Paczian, T., Wilke, A. & Meyer, F. (2005). BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser. Nucleic Acids Research, 33(Web Server), W710-W716. Oxford University Press (OUP). doi:10.1093/nar/gki400.

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