PUB - Publikationen an der Universität Bielefeld

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• [24]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694652

  Bonte, Anja, Neuweger, Heiko, Goesmann, Alexander, Thonar, Cécile, Mäder, Paul, Langenkämper, Georg, and Niehaus, Karsten. “Metabolite profiling on wheat grain to enable a distinction of samples from organic and conventional farming systems”. Journal of the science of food and agriculture 94.13 (2014): 2605-2612.

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• [23]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699819

  Schatschneider, Sarah, Huber, Claudia, Neuweger, Heiko, Watt, Tony, Pühler, Alfred, Eisenreich, Wolfgang, Wittmann, Christoph, Niehaus, Karsten, and Vorhölter, Frank-Jörg. “Metabolic flux pattern of glucose utilization by Xanthomonas campestris pv. campestris: prevalent role of the Entner-Doudoroff pathway and minor fluxes through the pentose phosphate pathway and glycolysis”. Molecular BioSystems 10.10 (2014): 2663-2676.

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• [22]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517239

  Hoffmann, Nils, Keck, Matthias, Neuweger, Heiko, Wilhelm, Mathias, Högy, Petra, Niehaus, Karsten, and Stoye, Jens. “Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets”. BMC Bioinformatics 13.1 (2012): 21.

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• [21]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500990

  Rose, Michael T, Rose, Terry J, Pariasca-Tanaka, Juan, Yoshihashi, Tadashi, Neuweger, Heiko, Goesmann, Alexander, Frei, Michael, and Wissuwa, Matthias. “Root metabolic response of rice (Oryza sativa L.) genotypes with contrasting tolerance to zinc deficiency and bicarbonate excess”. Planta 236.4 (2012): 959-973.

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• [20]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255

  Persicke, Marcus, Rückert, Christian, Plassmeier, Jens, Stutz, Leonhard, Kessler, Nikolas, Kalinowski, Jörn, Goesmann, Alexander, and Neuweger, Heiko. “MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example”. Metabolomics 8.2 (2012): 310-322.

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• [19]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944855

  Persicke, Marcus, Plassmeier, Jens, Neuweger, Heiko, Rückert, Christian, Pühler, Alfred, and Kalinowski, Jörn. “Erratum to “Size exclusion chromatography—An improved method to harvest Corynebacterium glutamicum cells for the analysis of cytosolic metabolites” [J. Biotechnol. 154 (2–3) (2011) 171–178]”. Journal of Biotechnology 155.2 (2011): 266-267.

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• [18]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289494

  Persicke, Marcus, Plassmeier, Jens, Neuweger, Heiko, Rückert, Christian, Pühler, Alfred, and Kalinowski, Jörn. “Size exclusion chromatography-An improved method to harvest Corynebacterium glutamicum cells for the analysis of cytosolic metabolites”. Journal of Biotechnology 154.2-3 (2011): 171-178.

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• [17]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445

  Schneider, Jessica, Blom, Jochen, Jaenicke, Sebastian, Linke, Burkhard, Brinkrolf, Karina, Neuweger, Heiko, Tauch, Andreas, and Goesmann, Alexander. “RAPYD - Rapid Annotation Platform for Yeast Data”. Journal of Biotechnology 155.1 (2011): 118-126.

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• [16]
  

  2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892

  Schneiker-Bekel, Susanne, Wibberg, Daniel, Bekel, Thomas, Blom, Jochen, Linke, Burkhard, Neuweger, Heiko, Stiens, Michael, Vorhölter, Frank-Jörg, Weidner, Stefan, Goesmann, Alexander, Pühler, Alfred, and Schlüter, Andreas. “The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome”. Journal of Biotechnology 155.1 (In Press): 20-33.

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• [15]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929692

  Schneider, Jessica, Vorhölter, Frank-Jörg, Trost, Eva, Blom, Jochen, Musa, Y. R., Neuweger, Heiko, Niehaus, Karsten, Schatschneider, Sarah, Tauch, Andreas, and Goesmann, Alexander. “CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks”. Genetics and Molecular Research 9.3 (2010): 1660-1672.

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• [14]
  

  2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907

  Mittard-Runte, Virginie, Bekel, Thomas, Blom, Jochen, Dondrup, Michael, Henckel, Kolja, Jaenicke, Sebastian, Krause, Lutz, Linke, Burkhard, Neuweger, Heiko, Schneiker-Bekel, Susanne, and Goesmann, Alexander. “Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions”. Introduction to Marine Genomics (Advances in Marine Genomics). Ed. J. Mark Cock, Kristin Tessmar-Raible, Catherine Boyen, and Frédérique Viard. Netherlands: Springer Netherlands, 2010.Vol. 1. 315-396.

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• [13]
  

  2009 | Bielefelder E-Dissertation | PUB-ID: 2301318

  Neuweger, Heiko. MeltDB : a software platform for the analysis and integration of metabolomics experiment data. Bielefeld (Germany): Bielefeld University, 2009.

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• [12]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813

  Neuweger, Heiko, Persicke, Marcus, Albaum, Stefan, Bekel, Thomas, Dondrup, Michael, Hüser, Andrea T., Winnebald, Jörn, Schneider, Jessica, Kalinowski, Jörn, and Goesmann, Alexander. “Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example”. BMC Systems Biology 3.1 (2009): 82.

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• [11]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321

  Dondrup, Michael, Albaum, Stefan, Griebel, Thasso, Henckel, Kolja, Jünemann, Sebastian, Kahlke, Tim, Kleindt, Christiane Katja, Kuester, Helge, Linke, Burkhard, Mertens, Dominik, Mittard-Runte, Virginie, Neuweger, Heiko, Runte, Kai J., Tauch, Andreas, Tille, Felix, Pühler, Alfred, and Goesmann, Alexander. “EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data”. BMC Bioinformatics 10.1 (2009): 50.

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• [10]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531

  Albaum, Stefan, Neuweger, Heiko, Fraenzel, Benjamin, Lange, Sita, Mertens, Dominik, Troetschel, Christian, Wolters, Dirk, Kalinowski, Jörn, Nattkemper, Tim Wilhelm, and Goesmann, Alexander. “Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments”. Bioinformatics 25.23 (2009): 3128-3134.

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• [9]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447

  Bekel, Thomas, Henckel, Kolja, Küster, Helge, Meyer, Folker, Mittard-Runte, Virginie, Neuweger, Heiko, Paarmann, Daniel, Rupp, Oliver, Zakrzewski, Martha, Pühler, Alfred, Stoye, Jens, and Goesmann, Alexander. “The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies”. Journal of Biotechnology 140.1-2 (2009): 3-12.

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• [8]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699

  Neuweger, Heiko, Albaum, Stefan, Dondrup, Michael, Persicke, Marcus, Watt, Tony, Niehaus, Karsten, Stoye, Jens, and Goesmann, Alexander. “MeltDB: a software platform for the analysis and integration of metabolomics experiment data”. Bioinformatics 24.23 (2008): 2726-2732.

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• [7]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009

  Krause, Lutz, Diaz, Naryttza N., Edwards, Robert A., Gartemann, Karl-Heinz, Krömeke, Holger, Neuweger, Heiko, Pühler, Alfred, Runte, Kai J., Schlüter, Andreas, Stoye, Jens, Szczepanowski, Rafael, Tauch, Andreas, and Goesmann, Alexander. “Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor”. JOURNAL OF BIOTECHNOLOGY 136.1-2 (2008): 91-101.

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• [6]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987

  Schlüter, Andreas, Bekel, Thomas, Diaz, Naryttza N., Dondrup, Michael, Eichenlaub, Rudolf, Gartemann, Karl-Heinz, Krahn, Irene, Krause, Lutz, Kroemeke, Holger, Kruse, Olaf, Mussgnug, Jan H., Neuweger, Heiko, Niehaus, Karsten, Pühler, Alfred, Runte, Kai J., Szczepanowski, Rafael, Tauch, Andreas, Tilker, Alexandra, Viehöver, Prisca, and Goesmann, Alexander. “The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology”. Journal of Biotechnology 136.1-2 (2008): 77-90.

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• [5]
  

  2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381

  Albaum, Stefan, Neuweger, Heiko, Lange, Sita, Mertens, Dominik, Runte, Kai, Kalinowski, Jörn, Nattkemper, Tim Wilhelm, and Goesmann, Alexander. “ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)”. HUPO 7th Annual World Congress. 2008.

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• [4]
  

  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754

  Neuweger, Heiko, Baumbach, Jan, Albaum, Stefan, Bekel, Thomas, Dondrup, Michael, Hüser, Andrea T., Kalinowski, Jörn, Oehm, Sebastian, Pühler, Alfred, Rahmann, Sven, Weile, Jochen, and Goesmann, Alexander. “CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data”. BMC Systems Biology 1.1 (2007): 55.

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• [3]
  

  2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2382786

  Linke, Burkhard, McHardy, Alice Carolyn, Neuweger, Heiko, Krause, Lutz, and Meyer, Folker. “The REGANOR gene prediction server for prokaryotic genomes and a database of high quality gene predictions for prokaryotes”. Applied Bioinformatics 5.3 (2006): 193-198.

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• [2]
  

  2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773652

  Overbeek, Ross, Begley, Tadhg, Butler, Ralph M., Choudhuri, Jomuna V., Chuang, Han-Yu, Cohoon, Matthew, Crécy-Lagard, Valérie de, Diaz, Naryttza N., Disz, Terry, Edwards, Robert, Fonstein, Michael, Frank, Ed D., Gerdes, Svetlana, Glass, Elizabeth M., Goesmann, Alexander, Hanson, Andrew, Iwata-Reuyl, Dirk, Jensen, Roy, Jamshidi, Neema, Krause, Lutz, Kubal, Michael, Larsen, Niels, Linke, Burkhard, McHardy, Alice C., Meyer, Folker, Neuweger, Heiko, Olsen, Gary, Olson, Robert, Osterman, Andrei, Portnoy, Vasiliy, Pusch, Gordon D., Rodionov, Dmitry A., Rückert, Christian, Steiner, Jason, Stevens, Rick, Thiele, Ines, Vassieva, Olga, Ye, Yuzhen, Zagnitko, Olga, and Vonstein, Veronika. “The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes”. Nucleic Acids Research 33.17 (2005): 5691-5702.

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• [1]
  

  2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773644

  Goesmann, Alexander, Linke, Burkhard, Bartels, Daniela, Dondrup, Michael, Krause, Lutz, Neuweger, Heiko, Oehm, Sebastian, Paczian, Tobias, Wilke, Andreas, and Meyer, Folker. “BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser”. Nucleic Acids Research 33.Web Server (2005): W710-W716.

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