PUB - Publikationen an der Universität Bielefeld

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• [24]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694652

  Bonte A, Neuweger H, Goesmann A, Thonar C, Mäder P, Langenkämper G, Niehaus K (2014)
  Metabolite profiling on wheat grain to enable a distinction of samples from organic and conventional farming systems.
  Journal of the science of food and agriculture 94(13): 2605-2612.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [23]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699819

  Schatschneider S, Huber C, Neuweger H, Watt T, Pühler A, Eisenreich W, Wittmann C, Niehaus K, Vorhölter F-J (2014)
  Metabolic flux pattern of glucose utilization by Xanthomonas campestris pv. campestris: prevalent role of the Entner-Doudoroff pathway and minor fluxes through the pentose phosphate pathway and glycolysis.
  Molecular BioSystems 10(10): 2663-2676.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [22]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517239

  Hoffmann N, Keck M, Neuweger H, Wilhelm M, Högy P, Niehaus K, Stoye J (2012)
  Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets.
  BMC Bioinformatics 13(1): 21.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [21]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500990

  Rose MT, Rose TJ, Pariasca-Tanaka J, Yoshihashi T, Neuweger H, Goesmann A, Frei M, Wissuwa M (2012)
  Root metabolic response of rice (Oryza sativa L.) genotypes with contrasting tolerance to zinc deficiency and bicarbonate excess.
  Planta 236(4): 959-973.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [20]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255

  Persicke M, Rückert C, Plassmeier J, Stutz L, Kessler N, Kalinowski J, Goesmann A, Neuweger H (2012)
  MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example.
  Metabolomics 8(2): 310-322.

  PUB | DOI | WoS
   
• [19]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944855

  Persicke M, Plassmeier J, Neuweger H, Rückert C, Pühler A, Kalinowski J (2011)
  Erratum to “Size exclusion chromatography—An improved method to harvest Corynebacterium glutamicum cells for the analysis of cytosolic metabolites” [J. Biotechnol. 154 (2–3) (2011) 171–178].
  Journal of Biotechnology 155(2): 266-267.

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• [18]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289494

  Persicke M, Plassmeier J, Neuweger H, Rückert C, Pühler A, Kalinowski J (2011)
  Size exclusion chromatography-An improved method to harvest Corynebacterium glutamicum cells for the analysis of cytosolic metabolites.
  Journal of Biotechnology 154(2-3): 171-178.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [17]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445

  Schneider J, Blom J, Jaenicke S, Linke B, Brinkrolf K, Neuweger H, Tauch A, Goesmann A (2011)
  RAPYD - Rapid Annotation Platform for Yeast Data.
  Journal of Biotechnology 155(1): 118-126.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [16]
  

  2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892

  Schneiker-Bekel S, Wibberg D, Bekel T, Blom J, Linke B, Neuweger H, Stiens M, Vorhölter F-J, Weidner S, Goesmann A, Pühler A, Schlüter A (In Press)
  The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome.
  Journal of Biotechnology 155(1): 20-33.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [15]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929692

  Schneider J, Vorhölter F-J, Trost E, Blom J, Musa YR, Neuweger H, Niehaus K, Schatschneider S, Tauch A, Goesmann A (2010)
  CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks.
  Genetics and Molecular Research 9(3): 1660-1672.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [14]
  

  2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907

  Mittard-Runte V, Bekel T, Blom J, Dondrup M, Henckel K, Jaenicke S, Krause L, Linke B, Neuweger H, Schneiker-Bekel S, Goesmann A (2010)
  Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions.
  In: Introduction to Marine Genomics (Advances in Marine Genomics). Cock JM, Tessmar-Raible K, Boyen C, Viard F (Eds);1. Netherlands: Springer Netherlands: 315-396.

  PUB | DOI
   
• [13]
  

  2009 | Bielefelder E-Dissertation | PUB-ID: 2301318

  Neuweger H (2009)
  MeltDB : a software platform for the analysis and integration of metabolomics experiment data.
  Bielefeld (Germany): Bielefeld University.

  PUB | PDF
   
• [12]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813

  Neuweger H, Persicke M, Albaum S, Bekel T, Dondrup M, Hüser AT, Winnebald J, Schneider J, Kalinowski J, Goesmann A (2009)
  Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example.
  BMC Systems Biology 3(1): 82.

  PUB | PDF | DOI | PubMed | Europe PMC
   
• [11]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321

  Dondrup M, Albaum S, Griebel T, Henckel K, Jünemann S, Kahlke T, Kleindt CK, Kuester H, Linke B, Mertens D, Mittard-Runte V, Neuweger H, Runte KJ, Tauch A, Tille F, Pühler A, Goesmann A (2009)
  EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data.
  BMC Bioinformatics 10(1): 50.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [10]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531

  Albaum S, Neuweger H, Fraenzel B, Lange S, Mertens D, Troetschel C, Wolters D, Kalinowski J, Nattkemper TW, Goesmann A (2009)
  Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments.
  Bioinformatics 25(23): 3128-3134.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [9]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447

  Bekel T, Henckel K, Küster H, Meyer F, Mittard-Runte V, Neuweger H, Paarmann D, Rupp O, Zakrzewski M, Pühler A, Stoye J, Goesmann A (2009)
  The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies.
  Journal of Biotechnology 140(1-2): 3-12.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [8]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699

  Neuweger H, Albaum S, Dondrup M, Persicke M, Watt T, Niehaus K, Stoye J, Goesmann A (2008)
  MeltDB: a software platform for the analysis and integration of metabolomics experiment data.
  Bioinformatics 24(23): 2726-2732.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [7]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009

  Krause L, Diaz NN, Edwards RA, Gartemann K-H, Krömeke H, Neuweger H, Pühler A, Runte KJ, Schlüter A, Stoye J, Szczepanowski R, Tauch A, Goesmann A (2008)
  Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor.
  JOURNAL OF BIOTECHNOLOGY 136(1-2): 91-101.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [6]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987

  Schlüter A, Bekel T, Diaz NN, Dondrup M, Eichenlaub R, Gartemann K-H, Krahn I, Krause L, Kroemeke H, Kruse O, Mussgnug JH, Neuweger H, Niehaus K, Pühler A, Runte KJ, Szczepanowski R, Tauch A, Tilker A, Viehöver P, Goesmann A (2008)
  The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology.
  Journal of Biotechnology 136(1-2): 77-90.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [5]
  

  2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381

  Albaum S, Neuweger H, Lange S, Mertens D, Runte K, Kalinowski J, Nattkemper TW, Goesmann A (2008)
  ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract).
  In: HUPO 7th Annual World Congress. .

  PUB
   
• [4]
  

  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754

  Neuweger H, Baumbach J, Albaum S, Bekel T, Dondrup M, Hüser AT, Kalinowski J, Oehm S, Pühler A, Rahmann S, Weile J, Goesmann A (2007)
  CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data.
  BMC Systems Biology 1(1): 55.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [3]
  

  2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2382786

  Linke B, McHardy AC, Neuweger H, Krause L, Meyer F (2006)
  The REGANOR gene prediction server for prokaryotic genomes and a database of high quality gene predictions for prokaryotes.
  Applied Bioinformatics 5(3): 193-198.

  PUB | DOI
   
• [2]
  

  2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773652

  Overbeek R, Begley T, Butler RM, Choudhuri JV, Chuang H-Y, Cohoon M, Crécy-Lagard V de, Diaz NN, Disz T, Edwards R, Fonstein M, Frank ED, Gerdes S, Glass EM, Goesmann A, Hanson A, Iwata-Reuyl D, Jensen R, Jamshidi N, Krause L, Kubal M, Larsen N, Linke B, McHardy AC, Meyer F, Neuweger H, Olsen G, Olson R, Osterman A, Portnoy V, Pusch GD, Rodionov DA, Rückert C, Steiner J, Stevens R, Thiele I, Vassieva O, Ye Y, Zagnitko O, Vonstein V (2005)
  The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes.
  Nucleic Acids Research 33(17): 5691-5702.

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• [1]
  

  2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773644

  Goesmann A, Linke B, Bartels D, Dondrup M, Krause L, Neuweger H, Oehm S, Paczian T, Wilke A, Meyer F (2005)
  BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser.
  Nucleic Acids Research 33(Web Server): W710-W716.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC