29 Publikationen
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202Zakrzewski, Martha, Bekel, Thomas, Ander, Christina, Pühler, Alfred, Rupp, Oliver, Stoye, Jens, Schlüter, Andreas, and Goesmann, Alexander. “MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets”. Journal of Biotechnology 167.2 (2013): 156-165.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501752Bassaglia, Yann, Bekel, Thomas, Da Silva, Corinne, Poulain, Julie, Andouche, Aude, Navet, Sandra, and Bonnaud, Laure. “ESTs library from embryonic stages reveals tubulin and reflectin diversity in Sepia officinalis (Mollusca - Cephalopoda)”. Gene 498.2 (2012): 203-211.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276Jaenicke, Sebastian, Ander, Christina, Bekel, Thomas, Bisdorf, Regina, Dröge, Marcus, Gartemann, Karl-Heinz, Jünemann, Sebastian, Kaiser, Olaf, Krause, Lutz, Tille, Felix, Zakrzewski, Martha, Pühler, Alfred, Schlüter, Andreas, and Goesmann, Alexander. “Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing”. PLoS ONE 6.1 (2011): e14519.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576Becker, Jennifer, Hackel, M, Jakobi, Tobias, Rupp, Oliver, Schneider, Jessica, Szczepanowski, Rafael, Bekel, Thomas, Borth, N, Goesmann, Alexander, Grillari, J, Kaltschmidt, Christian, Noll, Thomas, Pühler, Alfred, Tauch, Andreas, and Brinkrolf, Karina. “Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing”. Journal of Biotechnology 156.3 (2011): 227-235.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289902De Gregoris, Tristano Bacchetti, Rupp, Oliver, Klages, Sven, Knaust, Florian, Bekel, Thomas, Kube, Michael, Burgess, J. Grant, Arnone, Maria Ina, Goesmann, Alexander, Reinhardt, Richard, and Clare, Anthony S. “Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite”. Biofouling 27.4 (2011): 367-374.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892Schneiker-Bekel, Susanne, Wibberg, Daniel, Bekel, Thomas, Blom, Jochen, Linke, Burkhard, Neuweger, Heiko, Stiens, Michael, Vorhölter, Frank-Jörg, Weidner, Stefan, Goesmann, Alexander, Pühler, Alfred, and Schlüter, Andreas. “The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome”. Journal of Biotechnology 155.1 (In Press): 20-33.PUB | DOI | WoS | PubMed | Europe PMC
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275Trost, Eva, Götker, Susanne, Schneider, Jessica, Schneiker-Bekel, Susanne, Szczepanowski, Rafael, Tilker, Alexandra, Viehöver, Prisca, Arnold, Walter, Bekel, Thomas, Blom, Jochen, Gartemann, Karl-Heinz, Linke, Burkhard, Goesmann, Alexander, Pühler, Alfred, Shukla, Sanjay K., and Tauch, Andreas. “Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion”. BMC Genomics 11.1 (2010): 91.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907Mittard-Runte, Virginie, Bekel, Thomas, Blom, Jochen, Dondrup, Michael, Henckel, Kolja, Jaenicke, Sebastian, Krause, Lutz, Linke, Burkhard, Neuweger, Heiko, Schneiker-Bekel, Susanne, and Goesmann, Alexander. “Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions”. Introduction to Marine Genomics (Advances in Marine Genomics). Ed. J. Mark Cock, Kristin Tessmar-Raible, Catherine Boyen, and Frédérique Viard. Netherlands: Springer Netherlands, 2010.Vol. 1. 315-396.PUB | DOI
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785552Schmid, Jochen, Müller-Hagen, Dirk, Bekel, Thomas, Funk, Laura, Stahl, Ulf, Sieber, Volker, and Meyer, Vera. “Transcriptome sequencing and comparative transcriptome analysis of the scleroglucan producer Sclerotium rolfsii”. BMC Genomics 11.1 (2010): 329.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813Neuweger, Heiko, Persicke, Marcus, Albaum, Stefan, Bekel, Thomas, Dondrup, Michael, Hüser, Andrea T., Winnebald, Jörn, Schneider, Jessica, Kalinowski, Jörn, and Goesmann, Alexander. “Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example”. BMC Systems Biology 3.1 (2009): 82.PUB | PDF | DOI | PubMed | Europe PMC
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635300Henckel, Kolja, Runte, Kai J., Bekel, Thomas, Dondrup, Michael, Jakobi, Tobias, Küster, Helge, and Goesmann, Alexander. “TRUNCATULIX - a data warehouse for the legume community”. BMC Plant Biology 9.1 (2009): 19.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591439De Gregoris, Tristano Bacchetti, Borra, Marco, Biffali, Elio, Bekel, Thomas, Burgess, J. Grant, Kirby, Richard R., and Clare, Anthony S. “Construction of an adult barnacle (Balanus amphitrite) cDNA library and selection of reference genes for quantitative RT-PCR studies”. BMC Molecular Biology 10.1 (2009): 62.PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447Bekel, Thomas, Henckel, Kolja, Küster, Helge, Meyer, Folker, Mittard-Runte, Virginie, Neuweger, Heiko, Paarmann, Daniel, Rupp, Oliver, Zakrzewski, Martha, Pühler, Alfred, Stoye, Jens, and Goesmann, Alexander. “The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies”. Journal of Biotechnology 140.1-2 (2009): 3-12.PUB | DOI | WoS | PubMed | Europe PMC
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592024Vorhölter, Frank-Jörg, Schneiker-Bekel, Susanne, Goesmann, Alexander, Krause, Lutz, Bekel, Thomas, Kaiser, Olaf, Linke, Burkhard, Patschkowski, Thomas, Rückert, Christian, Schmid, Joachim, Sidhu, Vishaldeep Kaur, Sieber, Volker, Tauch, Andreas, Watt, Steven Alexander, Weisshaar, Bernd, Becker, Anke, Niehaus, Karsten, and Pühler, Alfred. “The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis”. Journal of Biotechnology 134.1-2 (2008): 33-45.PUB | DOI | WoS | PubMed | Europe PMC
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585956Stiens, Michael, Becker, Anke, Bekel, Thomas, Gödde, Victoria, Goesmann, Alexander, Niehaus, Karsten, Schneiker-Bekel, Susanne, Selbitschka, Werner, Weidner, Stefan, Schlüter, Andreas, and Pühler, Alfred. “Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11”. Journal of Biotechnology 136.1-2 (2008): 31-37.PUB | DOI | WoS | PubMed | Europe PMC
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987Schlüter, Andreas, Bekel, Thomas, Diaz, Naryttza N., Dondrup, Michael, Eichenlaub, Rudolf, Gartemann, Karl-Heinz, Krahn, Irene, Krause, Lutz, Kroemeke, Holger, Kruse, Olaf, Mussgnug, Jan H., Neuweger, Heiko, Niehaus, Karsten, Pühler, Alfred, Runte, Kai J., Szczepanowski, Rafael, Tauch, Andreas, Tilker, Alexandra, Viehöver, Prisca, and Goesmann, Alexander. “The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology”. Journal of Biotechnology 136.1-2 (2008): 77-90.PUB | DOI | WoS | PubMed | Europe PMC
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918Tauch, Andreas, Trost, Eva, Tilker, Alexandra, Ludewig, Ulrike, Schneiker-Bekel, Susanne, Goesmann, Alexander, Arnold, Walter, Bekel, Thomas, Brinkrolf, Karina, Brune, Iris, Goetker, Susanne, Kalinowski, Jörn, Kamp, Paul-Bertram, Lobo, Francisco Pereira, Viehöver, Prisca, Weisshaar, Bernd, Soriano, Francisco, Droege, Marcus, and Pühler, Alfred. “The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing”. Journal of Biotechnology 136.1-2 (2008): 11-21.PUB | DOI | WoS | PubMed | Europe PMC
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327Schneiker-Bekel, Susanne, Perlova, Olena, Kaiser, Olaf, Gerth, Klaus, Alici, Aysel, Altmeyer, Matthias O., Bartels, Daniela, Bekel, Thomas, Beyer, Stefan, Bode, Edna, Bode, Helge B., Bolten, Christoph J., Choudhuri, Jomuna V., Doss, Sabrina, Elnakady, Yasser A., Frank, Bettina, Gaigalat, Lars, Goesmann, Alexander, Groeger, Carolin, Gross, Frank, Jelsbak, Lars, Jelsbak, Lotte, Kalinowski, Jörn, Kegler, Carsten, Knauber, Tina, Konietzny, Sebastian, Kopp, Maren, Krause, Lutz, Krug, Daniel, Linke, Burkhard, Mahmud, Taifo, Martinez-Arias, Rosa, McHardy, Alice C., Merai, Michelle, Meyer, Folker, Mormann, Sascha, Munoz-Dorado, Jose, Perez, Juana, Pradella, Silke, Rachid, Shwan, Raddatz, Guenter, Rosenau, Frank, Rückert, Christian, Sasse, Florenz, Scharfe, Maren, Schuster, Stephan C., Suen, Garret, Treuner-Lange, Anke, Velicer, Gregory J., Vorhölter, Frank-Jörg, Weissman, Kira J., Welch, Roy D., Wenzel, Silke C., Whitworth, David E., Wilhelm, Susanne, Wittmann, Christoph, Bloecker, Helmut, Pühler, Alfred, and Mueller, Rolf. “Complete genome sequence of the myxobacterium Sorangium cellulosum”. Nature Biotechnology 25.11 (2007): 1281-1289.PUB | DOI | WoS | PubMed | Europe PMC
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754Neuweger, Heiko, Baumbach, Jan, Albaum, Stefan, Bekel, Thomas, Dondrup, Michael, Hüser, Andrea T., Kalinowski, Jörn, Oehm, Sebastian, Pühler, Alfred, Rahmann, Sven, Weile, Jochen, and Goesmann, Alexander. “CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data”. BMC Systems Biology 1.1 (2007): 55.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739Küster, Helge, Becker, Anke, Firnhaber, Christian, Hohnjec, Natalija, Manthey, Katja, Perlick, Andreas M., Bekel, Thomas, Dondrup, Michael, Henckel, Kolja, Goesmann, Alexander, Meyer, Folker, Wipf, Daniel, Requena, Natalia, Hildebrandt, Ulrich, Hampp, Rüdiger, Nehls, Uwe, Krajinski, Franziska, Franken, Philipp, and Pühler, Alfred. “Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses”. Phytochemistry 68.1 (2007): 19-32.PUB | DOI | WoS | PubMed | Europe PMC
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596976Krause, Andrea, Ramakumar, Adarsh, Bartels, Daniela, Battistoni, Federico, Bekel, Thomas, Boch, Jens, Boehm, Melanie, Friedrich, Frauke, Hurek, Thomas, Krause, Lutz, Linke, Burkhard, McHardy, Alice C., Sarkar, Abhijit, Schneiker-Bekel, Susanne, Syed, Arshad Ali, Thauer, Rudolf, Vorhölter, Frank-Jörg, Weidner, Stefan, Pühler, Alfred, Reinhold-Hurek, Barbara, Kaiser, Olaf, and Goesmann, Alexander. “Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72”. Nature Biotechnology 24.11 (2006): 1385-1391.PUB | DOI | WoS | PubMed | Europe PMC
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598182Schneiker-Bekel, Susanne, dos Santos, Vitor A. P. Martins, Bartels, Daniela, Bekel, Thomas, Brecht, Martina, Buhrmester, Jens, Chernikova, Tatyana N., Denaro, Renata, Ferrer, Manuel, Gertler, Christoph, Goesmann, Alexander, Golyshina, Olga V., Kaminski, Filip, Khachane, Amit N., Lang, Siegmund, Linke, Burkhard, McHardy, Alice C., Meyer, Folker, Nechitaylo, Taras, Pühler, Alfred, Regenhardt, Daniela, Rupp, Oliver, Sabirova, Julia S., Selbitschka, Werner, Yakimov, Michail M., Timmis, Kenneth N., Vorhölter, Frank-Jörg, Weidner, Stefan, Kaiser, Olaf, and Golyshin, Peter N. “Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis”. Nature Biotechnology 24.8 (2006): 997-1004.PUB | DOI | WoS | PubMed | Europe PMC
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598354Hohnjec, Natalija, Henckel, Kolja, Bekel, Thomas, Gouzy, Jerome, Dondrup, Michael, Goesmann, Alexander, and Küster, Helge. “Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatula”. FUNCTIONAL PLANT BIOLOGY 33.8 (2006): 737-748.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868701Tauch, Andreas, Trost, Eva, Bekel, Thomas, Goesmann, Alexander, Ludewig, U., and Pühler, Alfred. “Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System”. Biochemica 4 (2006): 4-6.PUB
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317Tauch, Andreas, Kaiser, Olaf, Hain, Torsten, Goesmann, Alexander, Weisshaar, Bernd, Albersmeier, Andreas, Bekel, Thomas, Bischoff, Nicole, Brune, Iris, Chakraborty, Trinad, Kalinowski, Jörn, Meyer, Folker, Rupp, Oliver, Schneiker-Bekel, Susanne, Viehöver, Prisca, and Pühler, Alfred. “Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora”. Journal of Bacteriology 187.13 (2005): 4671-4682.PUB | DOI | WoS | PubMed | Europe PMC | GenBank
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609197Nyamsuren, O, Colditz, F, Rosendahl, S, Tamasloukht, M, Bekel, Thomas, Meyer, F, Kuester, H, Franken, P, and Krajinski, F. “Transcriptional profiling of Medicago truncatula roots after infection with Aphanomyces euteiches (oomycota) identifies novel genes upregulated during this pathogenic interaction”. PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY 63.1 (2003): 17-26.PUB | DOI | WoS
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609251Kaiser, O., Bartels, D., Bekel, Thomas, Goesmann, Alexander, Kespohl, S., Pühler, Alfred, and Meyer, F. “Whole genome shotgun sequencing guided-by bioinformatics pipelines - An optimized approach for an established technique”. JOURNAL OF BIOTECHNOLOGY 106.2-3 (2003): 121-133.PUB | DOI | WoS | PubMed | Europe PMC
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880Meyer, Folker, Goesmann, Alexander, McHardy, Alice C., Bartels, Daniela, Bekel, Thomas, Clausen, Jörn, Kalinowski, Jörn, Linke, Burkhard, Rupp, Oliver, Giegerich, Robert, and Pühler, Alfred. “GenDB - an open source genome annotation system for prokaryote genomes”. Nucleic Acids Research 31.8 (2003): 2187-2195.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612236Wulf, A., Manthey, Katja, Doll, J., Perlick, A.M., Linke, Burkhard, Bekel, Thomas, Meyer, F., Franken, P., Küster, Helge, and Krajinski, F. “Transcriptional changes in response to arbuscular mycorrhiza development in the model plant Medicago truncatula”. Mol Plant Microbe Interact 16.4 (2003): 306-314.PUB | DOI | WoS | PubMed | Europe PMC | GenBank