29 Publikationen
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202Zakrzewski M, Bekel T, Ander C, Pühler A, Rupp O, Stoye J, Schlüter A, Goesmann A (2013)PUB | DOI | WoS | PubMed | Europe PMC
MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets.
Journal of Biotechnology 167(2): 156-165. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501752Bassaglia Y, Bekel T, Da Silva C, Poulain J, Andouche A, Navet S, Bonnaud L (2012)PUB | DOI | WoS | PubMed | Europe PMC
ESTs library from embryonic stages reveals tubulin and reflectin diversity in Sepia officinalis (Mollusca - Cephalopoda).
Gene 498(2): 203-211. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276Jaenicke S, Ander C, Bekel T, Bisdorf R, Dröge M, Gartemann K-H, Jünemann S, Kaiser O, Krause L, Tille F, Zakrzewski M, Pühler A, Schlüter A, Goesmann A (2011)PUB | DOI | WoS | PubMed | Europe PMC
Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing.
PLoS ONE 6(1): e14519. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576Becker J, Hackel M, Jakobi T, Rupp O, Schneider J, Szczepanowski R, Bekel T, Borth N, Goesmann A, Grillari J, Kaltschmidt C, Noll T, Pühler A, Tauch A, Brinkrolf K (2011)PUB | DOI | WoS | PubMed | Europe PMC
Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing.
Journal of Biotechnology 156(3): 227-235. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289902De Gregoris TB, Rupp O, Klages S, Knaust F, Bekel T, Kube M, Burgess JG, Arnone MI, Goesmann A, Reinhardt R, Clare AS (2011)PUB | DOI | WoS | PubMed | Europe PMC
Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite.
Biofouling 27(4): 367-374. -
2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892Schneiker-Bekel S, Wibberg D, Bekel T, Blom J, Linke B, Neuweger H, Stiens M, Vorhölter F-J, Weidner S, Goesmann A, Pühler A, Schlüter A (In Press)PUB | DOI | WoS | PubMed | Europe PMC
The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome.
Journal of Biotechnology 155(1): 20-33. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275Trost E, Götker S, Schneider J, Schneiker-Bekel S, Szczepanowski R, Tilker A, Viehöver P, Arnold W, Bekel T, Blom J, Gartemann K-H, Linke B, Goesmann A, Pühler A, Shukla SK, Tauch A (2010)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion.
BMC Genomics 11(1): 91. -
2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907Mittard-Runte V, Bekel T, Blom J, Dondrup M, Henckel K, Jaenicke S, Krause L, Linke B, Neuweger H, Schneiker-Bekel S, Goesmann A (2010)PUB | DOI
Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions.
In: Introduction to Marine Genomics (Advances in Marine Genomics). Cock JM, Tessmar-Raible K, Boyen C, Viard F (Eds);1. Netherlands: Springer Netherlands: 315-396. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785552Schmid J, Müller-Hagen D, Bekel T, Funk L, Stahl U, Sieber V, Meyer V (2010)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Transcriptome sequencing and comparative transcriptome analysis of the scleroglucan producer Sclerotium rolfsii.
BMC Genomics 11(1): 329. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813Neuweger H, Persicke M, Albaum S, Bekel T, Dondrup M, Hüser AT, Winnebald J, Schneider J, Kalinowski J, Goesmann A (2009)PUB | PDF | DOI | PubMed | Europe PMC
Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example.
BMC Systems Biology 3(1): 82. -
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591439De Gregoris TB, Borra M, Biffali E, Bekel T, Burgess JG, Kirby RR, Clare AS (2009)PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
Construction of an adult barnacle (Balanus amphitrite) cDNA library and selection of reference genes for quantitative RT-PCR studies.
BMC Molecular Biology 10(1): 62. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447Bekel T, Henckel K, Küster H, Meyer F, Mittard-Runte V, Neuweger H, Paarmann D, Rupp O, Zakrzewski M, Pühler A, Stoye J, Goesmann A (2009)PUB | DOI | WoS | PubMed | Europe PMC
The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies.
Journal of Biotechnology 140(1-2): 3-12. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592024Vorhölter F-J, Schneiker-Bekel S, Goesmann A, Krause L, Bekel T, Kaiser O, Linke B, Patschkowski T, Rückert C, Schmid J, Sidhu VK, Sieber V, Tauch A, Watt SA, Weisshaar B, Becker A, Niehaus K, Pühler A (2008)PUB | DOI | WoS | PubMed | Europe PMC
The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis.
Journal of Biotechnology 134(1-2): 33-45. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585956Stiens M, Becker A, Bekel T, Gödde V, Goesmann A, Niehaus K, Schneiker-Bekel S, Selbitschka W, Weidner S, Schlüter A, Pühler A (2008)PUB | DOI | WoS | PubMed | Europe PMC
Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11.
Journal of Biotechnology 136(1-2): 31-37. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987Schlüter A, Bekel T, Diaz NN, Dondrup M, Eichenlaub R, Gartemann K-H, Krahn I, Krause L, Kroemeke H, Kruse O, Mussgnug JH, Neuweger H, Niehaus K, Pühler A, Runte KJ, Szczepanowski R, Tauch A, Tilker A, Viehöver P, Goesmann A (2008)PUB | DOI | WoS | PubMed | Europe PMC
The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology.
Journal of Biotechnology 136(1-2): 77-90. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918Tauch A, Trost E, Tilker A, Ludewig U, Schneiker-Bekel S, Goesmann A, Arnold W, Bekel T, Brinkrolf K, Brune I, Goetker S, Kalinowski J, Kamp P-B, Lobo FP, Viehöver P, Weisshaar B, Soriano F, Droege M, Pühler A (2008)PUB | DOI | WoS | PubMed | Europe PMC
The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing.
Journal of Biotechnology 136(1-2): 11-21. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327Schneiker-Bekel S, Perlova O, Kaiser O, Gerth K, Alici A, Altmeyer MO, Bartels D, Bekel T, Beyer S, Bode E, Bode HB, Bolten CJ, Choudhuri JV, Doss S, Elnakady YA, Frank B, Gaigalat L, Goesmann A, Groeger C, Gross F, Jelsbak L, Jelsbak L, Kalinowski J, Kegler C, Knauber T, Konietzny S, Kopp M, Krause L, Krug D, Linke B, Mahmud T, Martinez-Arias R, McHardy AC, Merai M, Meyer F, Mormann S, Munoz-Dorado J, Perez J, Pradella S, Rachid S, Raddatz G, Rosenau F, Rückert C, Sasse F, Scharfe M, Schuster SC, Suen G, Treuner-Lange A, Velicer GJ, Vorhölter F-J, Weissman KJ, Welch RD, Wenzel SC, Whitworth DE, Wilhelm S, Wittmann C, Bloecker H, Pühler A, Mueller R (2007)PUB | DOI | WoS | PubMed | Europe PMC
Complete genome sequence of the myxobacterium Sorangium cellulosum.
Nature Biotechnology 25(11): 1281-1289. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754Neuweger H, Baumbach J, Albaum S, Bekel T, Dondrup M, Hüser AT, Kalinowski J, Oehm S, Pühler A, Rahmann S, Weile J, Goesmann A (2007)PUB | PDF | DOI | WoS | PubMed | Europe PMC
CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data.
BMC Systems Biology 1(1): 55. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739Küster H, Becker A, Firnhaber C, Hohnjec N, Manthey K, Perlick AM, Bekel T, Dondrup M, Henckel K, Goesmann A, Meyer F, Wipf D, Requena N, Hildebrandt U, Hampp R, Nehls U, Krajinski F, Franken P, Pühler A (2007)PUB | DOI | WoS | PubMed | Europe PMC
Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses.
Phytochemistry 68(1): 19-32. -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596976Krause A, Ramakumar A, Bartels D, Battistoni F, Bekel T, Boch J, Boehm M, Friedrich F, Hurek T, Krause L, Linke B, McHardy AC, Sarkar A, Schneiker-Bekel S, Syed AA, Thauer R, Vorhölter F-J, Weidner S, Pühler A, Reinhold-Hurek B, Kaiser O, Goesmann A (2006)PUB | DOI | WoS | PubMed | Europe PMC
Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72.
Nature Biotechnology 24(11): 1385-1391. -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598182Schneiker-Bekel S, dos Santos VAPM, Bartels D, Bekel T, Brecht M, Buhrmester J, Chernikova TN, Denaro R, Ferrer M, Gertler C, Goesmann A, Golyshina OV, Kaminski F, Khachane AN, Lang S, Linke B, McHardy AC, Meyer F, Nechitaylo T, Pühler A, Regenhardt D, Rupp O, Sabirova JS, Selbitschka W, Yakimov MM, Timmis KN, Vorhölter F-J, Weidner S, Kaiser O, Golyshin PN (2006)PUB | DOI | WoS | PubMed | Europe PMC
Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis.
Nature Biotechnology 24(8): 997-1004. -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598354Hohnjec N, Henckel K, Bekel T, Gouzy J, Dondrup M, Goesmann A, Küster H (2006)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatula.
FUNCTIONAL PLANT BIOLOGY 33(8): 737-748. -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868701Tauch A, Trost E, Bekel T, Goesmann A, Ludewig U, Pühler A (2006)PUB
Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System.
Biochemica 4: 4-6. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317Tauch A, Kaiser O, Hain T, Goesmann A, Weisshaar B, Albersmeier A, Bekel T, Bischoff N, Brune I, Chakraborty T, Kalinowski J, Meyer F, Rupp O, Schneiker-Bekel S, Viehöver P, Pühler A (2005)PUB | DOI | WoS | PubMed | Europe PMC | GenBank
Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora.
Journal of Bacteriology 187(13): 4671-4682. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609197Nyamsuren O, Colditz F, Rosendahl S, Tamasloukht M, Bekel T, Meyer F, Kuester H, Franken P, Krajinski F (2003)PUB | DOI | WoS
Transcriptional profiling of Medicago truncatula roots after infection with Aphanomyces euteiches (oomycota) identifies novel genes upregulated during this pathogenic interaction.
PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY 63(1): 17-26. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609251Kaiser O, Bartels D, Bekel T, Goesmann A, Kespohl S, Pühler A, Meyer F (2003)PUB | DOI | WoS | PubMed | Europe PMC
Whole genome shotgun sequencing guided-by bioinformatics pipelines - An optimized approach for an established technique.
JOURNAL OF BIOTECHNOLOGY 106(2-3): 121-133. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Pühler A (2003)PUB | PDF | DOI | WoS | PubMed | Europe PMC
GenDB - an open source genome annotation system for prokaryote genomes.
Nucleic Acids Research 31(8): 2187-2195. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612236Wulf A, Manthey K, Doll J, Perlick AM, Linke B, Bekel T, Meyer F, Franken P, Küster H, Krajinski F (2003)PUB | DOI | WoS | PubMed | Europe PMC | GenBank
Transcriptional changes in response to arbuscular mycorrhiza development in the model plant Medicago truncatula.
Mol Plant Microbe Interact 16(4): 306-314.