29 Publikationen
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202Zakrzewski, M., Bekel, T., Ander, C., Pühler, A., Rupp, O., Stoye, J., Schlüter, A., et al. (2013). MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets. Journal of Biotechnology, 167(2), 156-165. doi:10.1016/j.jbiotec.2012.09.013
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501752Bassaglia, Y., Bekel, T., Da Silva, C., Poulain, J., Andouche, A., Navet, S., & Bonnaud, L. (2012). ESTs library from embryonic stages reveals tubulin and reflectin diversity in Sepia officinalis (Mollusca - Cephalopoda). Gene, 498(2), 203-211. doi:10.1016/j.gene.2012.01.100
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276Jaenicke, S., Ander, C., Bekel, T., Bisdorf, R., Dröge, M., Gartemann, K. - H., Jünemann, S., et al. (2011). Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing. PLoS ONE, 6(1), e14519. https://doi.org/10.1371/journal.pone.0014519
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576Becker, J., Hackel, M., Jakobi, T., Rupp, O., Schneider, J., Szczepanowski, R., Bekel, T., et al. (2011). Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Journal of Biotechnology, 156(3), 227-235. https://doi.org/10.1016/j.jbiotec.2011.09.014
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289902De Gregoris, T. B., Rupp, O., Klages, S., Knaust, F., Bekel, T., Kube, M., Burgess, J. G., et al. (2011). Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite. Biofouling, 27(4), 367-374. https://doi.org/10.1080/08927014.2011.577211
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2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892Schneiker-Bekel, S., Wibberg, D., Bekel, T., Blom, J., Linke, B., Neuweger, H., Stiens, M., et al. (In Press). The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome. Journal of Biotechnology, 155(1), 20-33. https://doi.org/10.1016/j.jbiotec.2010.12.018
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275Trost, E., Götker, S., Schneider, J., Schneiker-Bekel, S., Szczepanowski, R., Tilker, A., Viehöver, P., et al. (2010). Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion. BMC Genomics, 11(1), 91. https://doi.org/10.1186/1471-2164-11-91
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2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907Mittard-Runte, V., Bekel, T., Blom, J., Dondrup, M., Henckel, K., Jaenicke, S., Krause, L., et al. (2010). Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions. In J. M. Cock, K. Tessmar-Raible, C. Boyen, & F. Viard (Eds.), Introduction to Marine Genomics (Advances in Marine Genomics) (Vol. 1, pp. 315-396). Netherlands: Springer Netherlands. https://doi.org/10.1007/978-90-481-8639-6_9
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785552Schmid, J., Müller-Hagen, D., Bekel, T., Funk, L., Stahl, U., Sieber, V., & Meyer, V. (2010). Transcriptome sequencing and comparative transcriptome analysis of the scleroglucan producer Sclerotium rolfsii. BMC Genomics, 11(1), 329. https://doi.org/10.1186/1471-2164-11-329
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813Neuweger, H., Persicke, M., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Winnebald, J., et al. (2009). Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example. BMC Systems Biology, 3(1), 82. https://doi.org/10.1186/1752-0509-3-82
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635300Henckel, K., Runte, K. J., Bekel, T., Dondrup, M., Jakobi, T., Küster, H., & Goesmann, A. (2009). TRUNCATULIX - a data warehouse for the legume community. BMC Plant Biology, 9(1), 19. https://doi.org/10.1186/1471-2229-9-19
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591439De Gregoris, T. B., Borra, M., Biffali, E., Bekel, T., Burgess, J. G., Kirby, R. R., & Clare, A. S. (2009). Construction of an adult barnacle (Balanus amphitrite) cDNA library and selection of reference genes for quantitative RT-PCR studies. BMC Molecular Biology, 10(1), 62. https://doi.org/10.1186/1471-2199-10-62
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447Bekel, T., Henckel, K., Küster, H., Meyer, F., Mittard-Runte, V., Neuweger, H., Paarmann, D., et al. (2009). The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies. Journal of Biotechnology, 140(1-2), 3-12. https://doi.org/10.1016/j.jbiotec.2009.01.006
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592024Vorhölter, F. - J., Schneiker-Bekel, S., Goesmann, A., Krause, L., Bekel, T., Kaiser, O., Linke, B., et al. (2008). The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis. Journal of Biotechnology, 134(1-2), 33-45. https://doi.org/10.1016/j.jbiotec.2007.12.013
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585956Stiens, M., Becker, A., Bekel, T., Gödde, V., Goesmann, A., Niehaus, K., Schneiker-Bekel, S., et al. (2008). Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11. Journal of Biotechnology, 136(1-2), 31-37. https://doi.org/10.1016/j.jbiotec.2008.04.014
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987Schlüter, A., Bekel, T., Diaz, N. N., Dondrup, M., Eichenlaub, R., Gartemann, K. - H., Krahn, I., et al. (2008). The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology. Journal of Biotechnology, 136(1-2), 77-90. https://doi.org/10.1016/j.jbiotec.2008.05.008
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918Tauch, A., Trost, E., Tilker, A., Ludewig, U., Schneiker-Bekel, S., Goesmann, A., Arnold, W., et al. (2008). The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing. Journal of Biotechnology, 136(1-2), 11-21. https://doi.org/10.1016/j.jbiotec.2008.02.009
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327Schneiker-Bekel, S., Perlova, O., Kaiser, O., Gerth, K., Alici, A., Altmeyer, M. O., Bartels, D., et al. (2007). Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnology, 25(11), 1281-1289. https://doi.org/10.1038/nbt1354
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754Neuweger, H., Baumbach, J., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Kalinowski, J., et al. (2007). CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Systems Biology, 1(1), 55. https://doi.org/10.1186/1752-0509-1-55
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739Küster, H., Becker, A., Firnhaber, C., Hohnjec, N., Manthey, K., Perlick, A. M., Bekel, T., et al. (2007). Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses. Phytochemistry, 68(1), 19-32. https://doi.org/10.1016/j.phytochem.2006.09.026
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596976Krause, A., Ramakumar, A., Bartels, D., Battistoni, F., Bekel, T., Boch, J., Boehm, M., et al. (2006). Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72. Nature Biotechnology, 24(11), 1385-1391. https://doi.org/10.1038/nbt1243
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598182Schneiker-Bekel, S., dos Santos, V. A. P. M., Bartels, D., Bekel, T., Brecht, M., Buhrmester, J., Chernikova, T. N., et al. (2006). Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Nature Biotechnology, 24(8), 997-1004. https://doi.org/10.1038/nbt1232
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598354Hohnjec, N., Henckel, K., Bekel, T., Gouzy, J., Dondrup, M., Goesmann, A., & Küster, H. (2006). Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatula. FUNCTIONAL PLANT BIOLOGY, 33(8), 737-748. https://doi.org/10.1071/FP06079
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868701Tauch, A., Trost, E., Bekel, T., Goesmann, A., Ludewig, U., & Pühler, A. (2006). Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System. Biochemica, 4, 4-6.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317Tauch, A., Kaiser, O., Hain, T., Goesmann, A., Weisshaar, B., Albersmeier, A., Bekel, T., et al. (2005). Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora. Journal of Bacteriology, 187(13), 4671-4682. https://doi.org/10.1128/JB.187.13.4671-4682.2005
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609197Nyamsuren, O., Colditz, F., Rosendahl, S., Tamasloukht, M., Bekel, T., Meyer, F., Kuester, H., et al. (2003). Transcriptional profiling of Medicago truncatula roots after infection with Aphanomyces euteiches (oomycota) identifies novel genes upregulated during this pathogenic interaction. PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY, 63(1), 17-26. https://doi.org/10.1016/j.pmpp.2003.09.001
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609251Kaiser, O., Bartels, D., Bekel, T., Goesmann, A., Kespohl, S., Pühler, A., & Meyer, F. (2003). Whole genome shotgun sequencing guided-by bioinformatics pipelines - An optimized approach for an established technique. JOURNAL OF BIOTECHNOLOGY, 106(2-3), 121-133. https://doi.org/10.1016/j.jbiotec.2003.08.008
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880Meyer, F., Goesmann, A., McHardy, A. C., Bartels, D., Bekel, T., Clausen, J., Kalinowski, J., et al. (2003). GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research, 31(8), 2187-2195. https://doi.org/10.1093/nar/gkg312
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612236Wulf, A., Manthey, K., Doll, J., Perlick, A. M., Linke, B., Bekel, T., Meyer, F., et al. (2003). Transcriptional changes in response to arbuscular mycorrhiza development in the model plant Medicago truncatula. Mol Plant Microbe Interact, 16(4), 306-314. https://doi.org/10.1094/MPMI.2003.16.4.306