29 Publikationen

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  • [29]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
    M. Zakrzewski, T. Bekel, C. Ander, A. Pühler, O. Rupp, J. Stoye, A. Schlüter, and A. Goesmann, “MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets”, Journal of Biotechnology, 2013, 167, 156-165.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [28]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501752
    Y. Bassaglia, T. Bekel, C. Da Silva, J. Poulain, A. Andouche, S. Navet, and L. Bonnaud, “ESTs library from embryonic stages reveals tubulin and reflectin diversity in Sepia officinalis (Mollusca - Cephalopoda)”, Gene, 2012, 498, 203-211.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [27]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276
    S. Jaenicke, C. Ander, T. Bekel, R. Bisdorf, M. Dröge, K. - H. Gartemann, S. Jünemann, O. Kaiser, L. Krause, F. Tille, et al., “Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing”, PLoS ONE, 2011, 6, : e14519.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [26]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576
    J. Becker, M. Hackel, T. Jakobi, O. Rupp, J. Schneider, R. Szczepanowski, T. Bekel, N. Borth, A. Goesmann, J. Grillari, et al., “Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing”, Journal of Biotechnology, 2011, 156, 227-235.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [25]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289902
    T. B. De Gregoris, O. Rupp, S. Klages, F. Knaust, T. Bekel, M. Kube, J. G. Burgess, M. I. Arnone, A. Goesmann, R. Reinhardt, et al., “Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite”, Biofouling, 2011, 27, 367-374.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [24]
    2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892
    S. Schneiker-Bekel, D. Wibberg, T. Bekel, J. Blom, B. Linke, H. Neuweger, M. Stiens, F. - J. Vorhölter, S. Weidner, A. Goesmann, et al., “The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome”, Journal of Biotechnology, In Press, 155, 20-33.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [23]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275 OA
    E. Trost, S. Götker, J. Schneider, S. Schneiker-Bekel, R. Szczepanowski, A. Tilker, P. Viehöver, W. Arnold, T. Bekel, J. Blom, et al., “Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion”, BMC Genomics, 2010, 11, : 91.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [22]
    2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907
    V. Mittard-Runte, T. Bekel, J. Blom, M. Dondrup, K. Henckel, S. Jaenicke, L. Krause, B. Linke, H. Neuweger, S. Schneiker-Bekel, et al., in Introduction to Marine Genomics (Advances in Marine Genomics) (Eds.: J.M. Cock, K. Tessmar-Raible, C. Boyen, F. Viard), Springer Netherlands, Netherlands, 2010, p. 315-396.
    PUB | DOI
     
  • [21]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785552 OA
    J. Schmid, D. Müller-Hagen, T. Bekel, L. Funk, U. Stahl, V. Sieber, and V. Meyer, “Transcriptome sequencing and comparative transcriptome analysis of the scleroglucan producer Sclerotium rolfsii”, BMC Genomics, 2010, 11, : 329.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [20]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813 OA
    H. Neuweger, M. Persicke, S. Albaum, T. Bekel, M. Dondrup, A. T. Hüser, J. Winnebald, J. Schneider, J. Kalinowski, and A. Goesmann, “Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example”, BMC Systems Biology, 2009, 3, : 82.
    PUB | PDF | DOI | PubMed | Europe PMC
     
  • [19]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635300 OA
    K. Henckel, K. J. Runte, T. Bekel, M. Dondrup, T. Jakobi, H. Küster, and A. Goesmann, “TRUNCATULIX - a data warehouse for the legume community”, BMC Plant Biology, 2009, 9, 19.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [18]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591439 OA
    T. B. De Gregoris, M. Borra, E. Biffali, T. Bekel, J. G. Burgess, R. R. Kirby, and A. S. Clare, “Construction of an adult barnacle (Balanus amphitrite) cDNA library and selection of reference genes for quantitative RT-PCR studies”, BMC Molecular Biology, 2009, 10, 62.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [17]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
    T. Bekel, K. Henckel, H. Küster, F. Meyer, V. Mittard-Runte, H. Neuweger, D. Paarmann, O. Rupp, M. Zakrzewski, A. Pühler, et al., “The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies”, Journal of Biotechnology, 2009, 140, 3-12.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [16]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592024
    F. - J. Vorhölter, S. Schneiker-Bekel, A. Goesmann, L. Krause, T. Bekel, O. Kaiser, B. Linke, T. Patschkowski, C. Rückert, J. Schmid, et al., “The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis”, Journal of Biotechnology, 2008, 134, 33-45.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [15]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585956
    M. Stiens, A. Becker, T. Bekel, V. Gödde, A. Goesmann, K. Niehaus, S. Schneiker-Bekel, W. Selbitschka, S. Weidner, A. Schlüter, et al., “Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11”, Journal of Biotechnology, 2008, 136, 31-37.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [14]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987
    A. Schlüter, T. Bekel, N. N. Diaz, M. Dondrup, R. Eichenlaub, K. - H. Gartemann, I. Krahn, L. Krause, H. Kroemeke, O. Kruse, et al., “The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology”, Journal of Biotechnology, 2008, 136, 77-90.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [13]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918
    A. Tauch, E. Trost, A. Tilker, U. Ludewig, S. Schneiker-Bekel, A. Goesmann, W. Arnold, T. Bekel, K. Brinkrolf, I. Brune, et al., “The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing”, Journal of Biotechnology, 2008, 136, 11-21.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [12]
    2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327
    S. Schneiker-Bekel, O. Perlova, O. Kaiser, K. Gerth, A. Alici, M. O. Altmeyer, D. Bartels, T. Bekel, S. Beyer, E. Bode, et al., “Complete genome sequence of the myxobacterium Sorangium cellulosum”, Nature Biotechnology, 2007, 25, 1281-1289.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [11]
    2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754 OA
    H. Neuweger, J. Baumbach, S. Albaum, T. Bekel, M. Dondrup, A. T. Hüser, J. Kalinowski, S. Oehm, A. Pühler, S. Rahmann, et al., “CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data”, BMC Systems Biology, 2007, 1, : 55.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [10]
    2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739
    H. Küster, A. Becker, C. Firnhaber, N. Hohnjec, K. Manthey, A. M. Perlick, T. Bekel, M. Dondrup, K. Henckel, A. Goesmann, et al., “Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses”, Phytochemistry, 2007, 68, 19-32.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [9]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596976
    A. Krause, A. Ramakumar, D. Bartels, F. Battistoni, T. Bekel, J. Boch, M. Boehm, F. Friedrich, T. Hurek, L. Krause, et al., “Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72”, Nature Biotechnology, 2006, 24, 1385-1391.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [8]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598182
    S. Schneiker-Bekel, V. A. P. M. dos Santos, D. Bartels, T. Bekel, M. Brecht, J. Buhrmester, T. N. Chernikova, R. Denaro, M. Ferrer, C. Gertler, et al., “Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis”, Nature Biotechnology, 2006, 24, 997-1004.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [7]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598354 OA
    N. Hohnjec, K. Henckel, T. Bekel, J. Gouzy, M. Dondrup, A. Goesmann, and H. Küster, “Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatula”, FUNCTIONAL PLANT BIOLOGY, 2006, 33, 737-748.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [6]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868701
    A. Tauch, E. Trost, T. Bekel, A. Goesmann, U. Ludewig, and A. Pühler, “Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System”, Biochemica, 2006, 4, 4-6.
    PUB
     
  • [5]
    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317
    A. Tauch, O. Kaiser, T. Hain, A. Goesmann, B. Weisshaar, A. Albersmeier, T. Bekel, N. Bischoff, I. Brune, T. Chakraborty, et al., “Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora”, Journal of Bacteriology, 2005, 187, 4671-4682.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [4]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609197
    O. Nyamsuren, F. Colditz, S. Rosendahl, M. Tamasloukht, T. Bekel, F. Meyer, H. Kuester, P. Franken, and F. Krajinski, “Transcriptional profiling of Medicago truncatula roots after infection with Aphanomyces euteiches (oomycota) identifies novel genes upregulated during this pathogenic interaction”, PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY, 2003, 63, 17-26.
    PUB | DOI | WoS
     
  • [3]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609251
    O. Kaiser, D. Bartels, T. Bekel, A. Goesmann, S. Kespohl, A. Pühler, and F. Meyer, “Whole genome shotgun sequencing guided-by bioinformatics pipelines - An optimized approach for an established technique”, JOURNAL OF BIOTECHNOLOGY, 2003, 106, 121-133.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [2]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880 OA
    F. Meyer, A. Goesmann, A. C. McHardy, D. Bartels, T. Bekel, J. Clausen, J. Kalinowski, B. Linke, O. Rupp, R. Giegerich, et al., “GenDB - an open source genome annotation system for prokaryote genomes”, Nucleic Acids Research, 2003, 31, 2187-2195.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [1]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612236
    A. Wulf, K. Manthey, J. Doll, A. M. Perlick, B. Linke, T. Bekel, F. Meyer, P. Franken, H. Küster, and F. Krajinski, “Transcriptional changes in response to arbuscular mycorrhiza development in the model plant Medicago truncatula”, Mol Plant Microbe Interact, 2003, 16, 306-314.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     

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