Alexander Goesmann
alexander.goesmann@uni-bielefeld.dehttps://orcid.org/0000-0002-7086-2568
PEVZ-ID
158 Publikationen
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2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2986391Nestling Diet of Two Sympatric Insectivorous Passerines in Different Habitats—A Metabarcoding StudyPUB | PDF | DOI
Höhn, Daniel, Nestling Diet of Two Sympatric Insectivorous Passerines in Different Habitats—A Metabarcoding Study. Birds 5 (1). , 2024 -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957996Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14PUB | PDF | DOI | WoS | PubMed | Europe PMC
Wibberg, Daniel, Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14. Journal of Fungi 7 (10). , 2021 -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919320Temporal variation in brain transcriptome is associated with the expression of female mimicry as a sequential male alternative reproductive tactic in fishPUB | DOI | WoS | PubMed | Europe PMC
Cardoso, Sara D., Temporal variation in brain transcriptome is associated with the expression of female mimicry as a sequential male alternative reproductive tactic in fish. MOLECULAR ECOLOGY 27 (3). , 2018 -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916526Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum Y-TPUB | DOI | WoS | PubMed | Europe PMC
Golyshina, Olga V., Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum Y-T. SCIENTIFIC REPORTS 7 (1). , 2017 -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Blifernez-Klassen, Olga, Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa). Genome Announcements 4 (3). , 2016 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2731279Genomic Avenue to Avian ColisepticemiaPUB | DOI | WoS | PubMed | Europe PMC
Huja, Sagi, Genomic Avenue to Avian Colisepticemia. mBio 6 (1). , 2015 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma GangrenosumPUB | DOI | WoS | PubMed | Europe PMC
Arnold, Martin, Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum. Genome announcements 3 (4). , 2015 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900131De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasitePUB | PDF | DOI | WoS | PubMed | Europe PMC
Pauli, Martina, De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite. BMC Genomics 16 (1). , 2015 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782605The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphismsPUB | DOI | WoS | PubMed | Europe PMC
Rupp, Oliver, The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms. Journal of Biotechnology 211 (). , 2015 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2730423Apparent vector-mediated parent-to-offspring transmission in an avian malaria-like parasitePUB | DOI | WoS | PubMed | Europe PMC
Chakarov, Nayden, Apparent vector-mediated parent-to-offspring transmission in an avian malaria-like parasite. Molecular Ecology 24 (6). , 2015 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter InfectionPUB | DOI | PubMed | Europe PMC
Tielen, Petra, Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection. Genome announcements 2 (1). , 2014 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643946The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)PUB | DOI | WoS | PubMed | Europe PMC
Dohm, Juliane C, The genome of the recently domesticated crop plant sugar beet (Beta vulgaris). Nature 505 (7484). , 2014 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2690174Elucidation of insertion elements carried on plasmids and in vitro construction of shuttle vectors from the toxic cyanobacterium planktothrixPUB | DOI | WoS | PubMed | Europe PMC
Christiansen, Guntram, Elucidation of insertion elements carried on plasmids and in vitro construction of shuttle vectors from the toxic cyanobacterium planktothrix. Applied and environmental microbiology 80 (16). , 2014 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694652Metabolite profiling on wheat grain to enable a distinction of samples from organic and conventional farming systemsPUB | DOI | WoS | PubMed | Europe PMC
Bonte, Anja, Metabolite profiling on wheat grain to enable a distinction of samples from organic and conventional farming systems. Journal of the science of food and agriculture 94 (13). , 2014 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.)PUB | DOI | WoS | PubMed | Europe PMC
Becker, Jennifer, Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.). Journal of biotechnology 178 (). , 2014 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis PipelinesPUB | DOI | WoS | PubMed | Europe PMC
Rupp, Oliver, Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines. PLoS ONE 9 (1). , 2014 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694682Complete genome of a new Firmicutes species belonging to the dominant human colonic microbiota ('Ruminococcus bicirculans') reveals two chromosomes and a selective capacity to utilize plant glucansPUB | DOI | WoS | PubMed | Europe PMC
Wegmann, Udo, Complete genome of a new Firmicutes species belonging to the dominant human colonic microbiota ('Ruminococcus bicirculans') reveals two chromosomes and a selective capacity to utilize plant glucans. Environmental microbiology 16 (9). , 2014 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691732Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteriaPUB | DOI | WoS | PubMed | Europe PMC
Klippel, Barbara, Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria. Extremophiles 18 (5). , 2014 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2664976Complete Genome Sequence of the Actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycinPUB | DOI | WoS | PubMed | Europe PMC
Rückert, Christian, Complete Genome Sequence of the Actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin. Journal of biotechnology 178 (). , 2014 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2554079Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genomePUB | DOI | WoS | PubMed | Europe PMC
Kuenne, Carsten, Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome. BMC Genomics 14 (1). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560837Complete Genome Sequence of the Probiotic Enterococcus faecalis Symbioflor 1 Clone DSM 16431PUB | DOI | PubMed | Europe PMC
Fritzenwanker, Moritz, Complete Genome Sequence of the Probiotic Enterococcus faecalis Symbioflor 1 Clone DSM 16431. Genome Announcements 1 (1). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2564601Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like ProteinPUB | DOI | WoS | PubMed | Europe PMC
Riedel, Thomas, Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like Protein. PLOS ONE 8 (3). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation SequencingPUB | DOI | WoS | PubMed | Europe PMC
Bolzan de Campos, Samanta, Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation Sequencing. Microbial Ecology 65 (3). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14PUB | DOI | WoS | PubMed | Europe PMC
Wibberg, Daniel, Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14. Journal of Biotechnology 167 (2). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2606943Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus RanaPUB | DOI | WoS | PubMed | Europe PMC
Vences, Miguel, Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana. Molecular phylogenetics and evolution 68 (3). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2602756Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888(T) as assessed by comparative genomicsPUB | DOI | WoS | PubMed | Europe PMC
Smits, Theo H. M., Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888(T) as assessed by comparative genomics. Systematic and applied microbiology 36 (7). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228Corrigendum: Updating benchtop sequencing performance comparisonPUB | DOI | WoS | PubMed | Europe PMC
Jünemann, Sebastian, Corrigendum: Updating benchtop sequencing performance comparison. Nature biotechnology 31 (12). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soilPUB | DOI | WoS | PubMed | Europe PMC
Köhler, Kirsten A. K., Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil. Journal of Biotechnology 168 (4). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2622238Complete sequence of Erwinia piriflorinigrans plasmids pEPIR37 and pEPIR5 and role of pEPIR37 in pathogen virulencePUB | DOI | WoS
Barbe, S., Complete sequence of Erwinia piriflorinigrans plasmids pEPIR37 and pEPIR5 and role of pEPIR37 in pathogen virulence. Plant Pathology 62 (4). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2615581Chinese hamster genome sequenced from sorted chromosomesPUB | DOI | WoS | PubMed | Europe PMC
Brinkrolf, Karina, Chinese hamster genome sequenced from sorted chromosomes. Nature Biotechnology 31 (8). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576080New insights into Chlamydomonas reinhardtii hydrogen production processes by combined microarray/RNA-seq transcriptomicsPUB | DOI | WoS | PubMed | Europe PMC
Toepel, Jörg, New insights into Chlamydomonas reinhardtii hydrogen production processes by combined microarray/RNA-seq transcriptomics. Plant Biotechnology Journal 11 (6). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631956Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmidsPUB | DOI | WoS | PubMed | Europe PMC
Rückert, Christian, Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids. Journal of Biotechnology 168 (4). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922Updating benchtop sequencing performance comparisonPUB | DOI | WoS | PubMed | Europe PMC
Jünemann, Sebastian, Updating benchtop sequencing performance comparison. Nature Biotechnology 31 (4). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557938Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved CorePUB | DOI | WoS | PubMed | Europe PMC
Mann, Rachel A, Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core. PLOS ONE 8 (2). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel productionPUB | PDF | DOI | WoS | PubMed | Europe PMC
Bogen, Christian, Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics 14 (1). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610129MeltDB 2.0 - Advances of the metabolomics software systemPUB | DOI | WoS | PubMed | Europe PMC
Kessler, Nikolas, MeltDB 2.0 - Advances of the metabolomics software system. Bioinformatics 29 (19). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasetsPUB | DOI | WoS | PubMed | Europe PMC
Zakrzewski, Martha, MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets. Journal of Biotechnology 167 (2). , 2013 -
2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2538625Einsatz von Protein- und Metabolit-Profiling-Methoden zur Unterscheidung von ökologischem und konventionellem WeizenPUB
Bonte, Anja, Einsatz von Protein- und Metabolit-Profiling-Methoden zur Unterscheidung von ökologischem und konventionellem Weizen. (). , 2013 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon SequencingPUB | DOI | WoS | PubMed | Europe PMC
Jünemann, Sebastian, Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing. PLoS ONE 7 (8). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500959Unique core genomes of the bacterial family vibrionaceae: Insights into niche adaptation and speciationPUB | DOI | WoS | PubMed | Europe PMC
Kahlke, Tim, Unique core genomes of the bacterial family vibrionaceae: Insights into niche adaptation and speciation. BMC genomics 13 (1). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500966Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenesPUB | DOI | WoS | PubMed | Europe PMC
Hain, Torsten, Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes. BMC Genomics 13 (1). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencingPUB | DOI | WoS | PubMed | Europe PMC
Zakrzewski, Martha, Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing. Journal of Biotechnology 158 (4). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500990Root metabolic response of rice (Oryza sativa L.) genotypes with contrasting tolerance to zinc deficiency and bicarbonate excessPUB | DOI | WoS | PubMed | Europe PMC
Rose, Michael T, Root metabolic response of rice (Oryza sativa L.) genotypes with contrasting tolerance to zinc deficiency and bicarbonate excess. Planta 236 (4). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490949Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10PUB | DOI | WoS | PubMed | Europe PMC
Zschuttig, Anke, Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10. PLoS ONE 7 (3). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471858Correction: bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymesPUB | DOI | PubMed | Europe PMC
Ausec, Luka, Correction: bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes. PLoS ONE 7 (1). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silagePUB | DOI | WoS | PubMed | Europe PMC
Heinl, Stefan, Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage. Journal of Biotechnology 161 (2). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471681Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencingPUB | DOI | WoS | PubMed | Europe PMC
Rademacher, Antje, Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing. FEMS Microbiology Ecology 79 (3). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513256Genome Sequence of Fibrella aestuarina BUZ 2T, a Filamentous Marine BacteriumPUB | DOI | WoS | PubMed | Europe PMC
Filippini, Manuela, Genome Sequence of Fibrella aestuarina BUZ 2T, a Filamentous Marine Bacterium. Journal of bacteriology 194 (13). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232Protein turnover quantification in a multi-labeling approach - from data calculation to evaluationPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Trötschel, C, Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation. Molecular & Cellular Proteomics 11 (8). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2487853Comparative genomic analysis of Salmonella enterica subsp. enterica serovar Weltevreden foodborne strains with other serovarsPUB | DOI | WoS | PubMed | Europe PMC
Brankatschk, K, Comparative genomic analysis of Salmonella enterica subsp. enterica serovar Weltevreden foodborne strains with other serovars. International journal of food microbiology 155 (3). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2474002Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activitiesPUB | DOI | WoS | PubMed | Europe PMC
Schneider, Jessica, Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities. FEMS Yeast Research 12 (3). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell linesPUB | DOI | WoS | PubMed | Europe PMC
Hackl, Matthias, Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines. Journal of Biotechnology 158 (3). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an examplePUB | DOI | WoS
Persicke, Marcus, MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example. Metabolomics 8 (2). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10PUB | DOI | WoS | PubMed | Europe PMC
Schneider, Jessica, Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10. Eukaryotic Cell 11 (12). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500937Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovoraPUB | DOI | WoS | PubMed | Europe PMC
Rezzonico, Fabio, Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovora. Molecular plant pathology 13 (8). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501081Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342PUB | DOI | WoS | PubMed | Europe PMC | GenBank
De Maayer, Pieter, Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342. Journal of Bacteriology 194 (6). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529610Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198PUB | DOI | WoS | PubMed | Europe PMC
Schork, Sabine, Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198. Journal of Bacteriology 194 (18). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526281Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32PUB | DOI | WoS | PubMed | Europe PMC
Zischka, M., Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32. Journal of Bacteriology 194 (19). , 2012 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500946Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative elementPUB | DOI | WoS | PubMed | Europe PMC
Mann, Rachel A, Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element. Gene 504 (1). , 2012 -
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768Next-generation sequencing of the CHO cell transcriptomePUB | DOI
Becker, Jennifer, Next-generation sequencing of the CHO cell transcriptome. 5 (Suppl. 8). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093398Genome of a European Fresh-Vegetable Food Safety Outbreak Strain of Salmonella enterica subsp enterica Serovar WeltevredenPUB | DOI | WoS | PubMed | Europe PMC
Brankatschk, Kerstin, Genome of a European Fresh-Vegetable Food Safety Outbreak Strain of Salmonella enterica subsp enterica Serovar Weltevreden. Journal of Bacteriology 193 (8). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-PyrosequencingPUB | DOI | WoS | PubMed | Europe PMC
Jaenicke, Sebastian, Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing. PLoS ONE 6 (1). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2411830Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymesPUB | DOI | WoS | PubMed | Europe PMC
Ausec, Luka, Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes. PLoS ONE 6 (10). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application studyPUB | PDF | DOI | WoS | PubMed | Europe PMC
Albaum, Stefan, A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study. Proteome Science 9 (1). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtiiPUB | PDF | DOI | WoS | PubMed | Europe PMC
Toepel, Jörg, Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii. BMC Genomics 12 (1). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysisPUB | DOI | WoS | PubMed | Europe PMC
Pothier, Joël F., The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters 323 (1). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmidPUB | DOI | WoS | PubMed | Europe PMC
Wibberg, Daniel, Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. Journal of Biotechnology 155 (1). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371High-quality genome sequence of Pichia pastoris CBS7435PUB | DOI | WoS | PubMed | Europe PMC
Küberl, Andreas, High-quality genome sequence of Pichia pastoris CBS7435. Journal of Biotechnology 154 (4). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencingPUB | DOI | WoS | PubMed | Europe PMC
Becker, Jennifer, Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Journal of Biotechnology 156 (3). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289576Lausannevirus, a giant amoebal virus encoding histone doubletsPUB | DOI | WoS | PubMed | Europe PMC
Thomas, Vincent, Lausannevirus, a giant amoebal virus encoding histone doublets. Environmental Microbiology 13 (6). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445RAPYD - Rapid Annotation Platform for Yeast DataPUB | DOI | WoS | PubMed | Europe PMC
Schneider, Jessica, RAPYD - Rapid Annotation Platform for Yeast Data. Journal of Biotechnology 155 (1). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2447730Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. MED134PUB | DOI | WoS | PubMed | Europe PMC
Gonzalez, Jose M., Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. MED134. Applied and Environmental Microbiology 77 (24). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307104Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1PUB | DOI | WoS | PubMed | Europe PMC
Smits, Theo H. M., Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1. PLoS ONE 6 (7). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326455RhizoRegNet-A database of rhizobial transcription factors and regulatory networksPUB | DOI | WoS | PubMed | Europe PMC
Krol, Elizaveta, RhizoRegNet-A database of rhizobial transcription factors and regulatory networks. Journal of Biotechnology 155 (1). , 2011 -
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2397780Using the GUS Reporter Gene for Quantitative Studies of Promotor Activity in A.thaliana SeedlingsPUB
Doppmeier, Daniel, Using the GUS Reporter Gene for Quantitative Studies of Promotor Activity in A.thaliana Seedlings. (). , 2011 -
2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics MethodsPUB | DOI
Jaenicke, Sebastian, Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods. Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats (). Hoboken, NJ, USA, 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2290032Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory GenomePUB | DOI | WoS | PubMed | Europe PMC
Joseph, Biju, Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome. PLoS ONE 6 (4). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093389Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594PUB | DOI | WoS | PubMed | Europe PMC
Schoen, Christoph, Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594. Journal of Bacteriology 193 (8). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289902Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitritePUB | DOI | WoS | PubMed | Europe PMC
De Gregoris, Tristano Bacchetti, Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite. Biofouling 27 (4). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programmingPUB | DOI | WoS | PubMed | Europe PMC
Blom, Jochen, Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. Bioinformatics 27 (10). , 2011 -
2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genomePUB | DOI | WoS | PubMed | Europe PMC
Schneiker-Bekel, Susanne, The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome. Journal of Biotechnology 155 (1). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineeringPUB | DOI | WoS | PubMed | Europe PMC
Hackl, Matthias, Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering. Journal of Biotechnology 153 (1-2). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2036058Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybeanPUB | DOI | WoS | PubMed | Europe PMC
Margaret, Isabel, Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean. Journal of Biotechnology 155 (1). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578Conveyor: a workflow engine for bioinformatic analysesPUB | DOI | WoS | PubMed | Europe PMC
Linke, Burkhard, Conveyor: a workflow engine for bioinformatic analyses. Bioinformatics 27 (7). , 2011 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1966439The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulencePUB | DOI | WoS | PubMed | Europe PMC
Trost, Eva, The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence. BMC Genomics 11 (1). , 2010 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794039Comparative Analysis of Plasmids in the Genus ListeriaPUB | DOI | WoS | PubMed | Europe PMC
Kuenne, Carsten, Comparative Analysis of Plasmids in the Genus Listeria. PLOS ONE 5 (9). , 2010 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795508The Waddlia Genome: A Window into Chlamydial BiologyPUB | DOI | WoS | PubMed | Europe PMC
Bertelli, Claire, The Waddlia Genome: A Window into Chlamydial Biology. PLOS ONE 5 (5). , 2010 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795628Genomic and phenotypic characterization of a nonpigmented variant of Pantoea vagans biocontrol strain C9-1 lacking the 530-kb megaplasmid pPag3PUB | DOI | WoS | PubMed | Europe PMC
Smits, Theo H. M., Genomic and phenotypic characterization of a nonpigmented variant of Pantoea vagans biocontrol strain C9-1 lacking the 530-kb megaplasmid pPag3. FEMS MICROBIOLOGY LETTERS 308 (1). , 2010 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929692CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic NetworksPUB | DOI | WoS | PubMed | Europe PMC
Schneider, Jessica, CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks. Genetics and Molecular Research 9 (3). , 2010 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortionPUB | PDF | DOI | WoS | PubMed | Europe PMC
Trost, Eva, Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion. BMC Genomics 11 (1). , 2010 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785504Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutumPUB | PDF | DOI | WoS | PubMed | Europe PMC
Yang, Ines, Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutum. BMC Genomics 11 (1). , 2010 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796445Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp.PUB | DOI | WoS | PubMed | Europe PMC
Smits, Theo H. M., Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp.. MOLECULAR PLANT-MICROBE INTERACTIONS 23 (4). , 2010 -
2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907Practical Guide: Genomic Techniques and How to Apply Them to Marine QuestionsPUB | DOI
Mittard-Runte, Virginie, Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions. Introduction to Marine Genomics (Advances in Marine Genomics) 1 (). Netherlands, 2010 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796644Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicityPUB | PDF | DOI | WoS | PubMed | Europe PMC
Smits, Theo H. M., Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity. BMC Genomics 11 (1). , 2010 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785579Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8PUB | PDF | DOI | WoS | PubMed | Europe PMC
Farnbacher, Max, Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8. BMC Genomics 11 (1). , 2010 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588692Complete Genome Sequence of Listeria seeligeri, a Nonpathogenic Member of the Genus ListeriaPUB | DOI | WoS | PubMed | Europe PMC
Steinweg, Christiane, Complete Genome Sequence of Listeria seeligeri, a Nonpathogenic Member of the Genus Listeria. Journal of Bacteriology 192 (5). , 2010 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894319MediPlEx - a tool to combine in silico and experimental gene expression profiles of the model legume Medicago truncatula.PUB | PDF | DOI | PubMed | Europe PMC
Henckel, Kolja, MediPlEx - a tool to combine in silico and experimental gene expression profiles of the model legume Medicago truncatula.. BMC Research Notes 3 (1). , 2010 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968262Genome Sequence of the Biocontrol Agent Pantoea vagans Strain C9-1PUB | DOI | WoS | PubMed | Europe PMC
Smits, Theo H. M., Genome Sequence of the Biocontrol Agent Pantoea vagans Strain C9-1. Journal of Bacteriology 192 (24). , 2010 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990186Visualization of omics data for systems biologyPUB | DOI | WoS | PubMed | Europe PMC
Gehlenborg, Nils, Visualization of omics data for systems biology. Nat Methods 7 (3s). , 2010 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal VirulencePUB | DOI | WoS | PubMed | Europe PMC
Joseph, Biju, Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence. JOURNAL OF BACTERIOLOGY 192 (20). , 2010 -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634097Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxidePUB | DOI | WoS | PubMed | Europe PMC
Strittmatter, Axel W., Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. ENVIRONMENTAL MICROBIOLOGY 11 (5). , 2009 -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2397394Entschlüsselung mikrobieller Genomsequenzen im SchnellverfahrenPUB
Goesmann, Alexander, Entschlüsselung mikrobieller Genomsequenzen im Schnellverfahren. BIOspektrum 15 (3). , 2009 -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783022Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript formatPUB | PDF | DOI | PubMed | Europe PMC
Krawczyk, Justina, Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format. Source Code for Biology and Medicine 4 (1). , 2009 -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an examplePUB | PDF | DOI | PubMed | Europe PMC
Neuweger, Heiko, Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example. BMC Systems Biology 3 (1). , 2009 -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187EDGAR: a software framework for the comparative analysis of prokaryotic genomesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Blom, Jochen, EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics 10 (1). , 2009 -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635300TRUNCATULIX - a data warehouse for the legume communityPUB | PDF | DOI | WoS | PubMed | Europe PMC
Henckel, Kolja, TRUNCATULIX - a data warehouse for the legume community. BMC Plant Biology 9 (1). , 2009 -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634467A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome dataPUB | DOI | WoS | PubMed | Europe PMC
Becker, Anke, A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data. JOURNAL OF BIOTECHNOLOGY 140 (1-2). , 2009 -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approachPUB | PDF | DOI | WoS | PubMed | Europe PMC
Diaz, Naryttza N., TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach. BMC Bioinformatics 10 (1). , 2009 -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray dataPUB | PDF | DOI | WoS | PubMed | Europe PMC
Dondrup, Michael, EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics 10 (1). , 2009 -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic readsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Gerlach, Wolfgang, WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinformatics 10 (1). , 2009 -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experimentsPUB | DOI | WoS | PubMed | Europe PMC
Albaum, Stefan, Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics 25 (23). , 2009 -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589936Complete Genome Sequence of Lactobacillus johnsonii FI9785, a Competitive Exclusion Agent against Pathogens in PoultryPUB | DOI | WoS | PubMed | Europe PMC
Wegmann, Udo, Complete Genome Sequence of Lactobacillus johnsonii FI9785, a Competitive Exclusion Agent against Pathogens in Poultry. JOURNAL OF BACTERIOLOGY 191 (22). , 2009 -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologiesPUB | DOI | WoS | PubMed | Europe PMC
Bekel, Thomas, The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies. Journal of Biotechnology 140 (1-2). , 2009 -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634461An evaluation framework for statistical tests on microarray dataPUB | DOI | WoS | PubMed | Europe PMC
Dondrup, Michael, An evaluation framework for statistical tests on microarray data. JOURNAL OF BIOTECHNOLOGY 140 (1-2). , 2009 -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783292The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic BordetellaePUB | PDF | DOI | WoS | PubMed | Europe PMC
Gross, Roy, The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae. BMC Genomics 9 (1). , 2008 -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699MeltDB: a software platform for the analysis and integration of metabolomics experiment dataPUB | DOI | WoS | PubMed | Europe PMC
Neuweger, Heiko, MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics 24 (23). , 2008 -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592024The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesisPUB | DOI | WoS | PubMed | Europe PMC
Vorhölter, Frank-Jörg, The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis. Journal of Biotechnology 134 (1-2). , 2008 -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidisPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Schoen, Christoph, Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105 (9). , 2008 -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactorPUB | DOI | WoS | PubMed | Europe PMC
Krause, Lutz, Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. JOURNAL OF BIOTECHNOLOGY 136 (1-2). , 2008 -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585956Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11PUB | DOI | WoS | PubMed | Europe PMC
Stiens, Michael, Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11. Journal of Biotechnology 136 (1-2). , 2008 -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technologyPUB | DOI | WoS | PubMed | Europe PMC
Schlüter, Andreas, The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology. Journal of Biotechnology 136 (1-2). , 2008 -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencingPUB | DOI | WoS | PubMed | Europe PMC
Tauch, Andreas, The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing. Journal of Biotechnology 136 (1-2). , 2008 -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organismsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Oehm, Sebastian, Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms. NUCLEIC ACIDS RESEARCH 36 (Web Server). , 2008 -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acidsPUB | DOI | WoS | PubMed | Europe PMC
Tauch, Andreas, Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids. Journal of Biotechnology 136 (1-2). , 2008 -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364Phylogenetic classification of short environmental DNA fragmentsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Krause, Lutz, Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Research 36 (7). , 2008 -
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)PUB
Albaum, Stefan, ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract). HUPO 7th Annual World Congress (). , 2008 -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990198Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7PUB | DOI | WoS | PubMed | Europe PMC
Strauch, Eckhard, Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7. Infection and Immunity 76 (12). , 2008 -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327Complete genome sequence of the myxobacterium Sorangium cellulosumPUB | DOI | WoS | PubMed | Europe PMC
Schneiker-Bekel, Susanne, Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnology 25 (11). , 2007 -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631047Genomic sequence of chorioallantois vaccinia virus Ankara, the ancestor of modified vaccinia virus AnkaraPUB | DOI | WoS | PubMed | Europe PMC
Meisinger-Henschel, Christine, Genomic sequence of chorioallantois vaccinia virus Ankara, the ancestor of modified vaccinia virus Ankara. JOURNAL OF GENERAL VIROLOGY 88 (12). , 2007 -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome dataPUB | PDF | DOI | WoS | PubMed | Europe PMC
Neuweger, Heiko, CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Systems Biology 1 (1). , 2007 -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593149Ecological genomics of marine roseobactersPUB | DOI | WoS | PubMed | Europe PMC
Moran, M. A., Ecological genomics of marine roseobacters. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 73 (14). , 2007 -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594098Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp cremoris MG1363PUB | DOI | WoS | PubMed | Europe PMC
Wegmann, Udo, Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp cremoris MG1363. JOURNAL OF BACTERIOLOGY 189 (8). , 2007 -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593268The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established alpha, beta and delta sub-groupsPUB | DOI | WoS | PubMed | Europe PMC
Bahl, Martin Iain, The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established alpha, beta and delta sub-groups. PLASMID 58 (1). , 2007 -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbiosesPUB | DOI | WoS | PubMed | Europe PMC
Küster, Helge, Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses. Phytochemistry 68 (1). , 2007 -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596976Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72PUB | DOI | WoS | PubMed | Europe PMC
Krause, Andrea, Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72. Nature Biotechnology 24 (11). , 2006 -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598182Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensisPUB | DOI | WoS | PubMed | Europe PMC
Schneiker-Bekel, Susanne, Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Nature Biotechnology 24 (8). , 2006 -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598354Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatulaPUB | PDF | DOI | WoS | PubMed | Europe PMC
Hohnjec, Natalija, Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatula. FUNCTIONAL PLANT BIOLOGY 33 (8). , 2006 -
2006 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1596017Genome comparison of non-pathogenic and pathogenic meningococciPUB | WoS
Schoen, C., Genome comparison of non-pathogenic and pathogenic meningococci. 296 (Suppl. 42). , 2006 -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868701Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 SystemPUB
Tauch, Andreas, Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System. Biochemica 4 (). , 2006 -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597316Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenesPUB | DOI | WoS | PubMed | Europe PMC
Hain, Torsten, Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes. Journal of Bacteriology 188 (23). , 2006 -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparisonPUB | PDF | DOI | WoS | PubMed | Europe PMC
Bartels, Daniela, BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics 21 (7). , 2005 -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601712Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequencePUB | DOI | WoS | PubMed | Europe PMC
Thieme, F, Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. JOURNAL OF BACTERIOLOGY 187 (21). , 2005 -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773652The subsystems approach to genome annotation and its use in the Project to Annotate 1000 GenomesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Overbeek, Ross, The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes. Nucleic Acids Research 33 (17). , 2005 -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin floraPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Tauch, Andreas, Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora. Journal of Bacteriology 187 (13). , 2005 -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773644BRIGEP - the BRIDGE-based genome-transcriptome-proteome browserPUB | PDF | DOI | WoS | PubMed | Europe PMC
Goesmann, Alexander, BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser. Nucleic Acids Research 33 (Web Server). , 2005 -
2004 | Bielefelder E-Dissertation | PUB-ID: 2301314BRIDGE : a bioinformatics software platform for the integration of heterogeneous data from genomic explorationsPUB | PDF
Goesmann, Alexander, BRIDGE : a bioinformatics software platform for the integration of heterogeneous data from genomic explorations. (). Bielefeld (Germany), 2004 -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608756The genome sequence of Mycoplasma mycoides subsp mycoides SC type strain PG1(T), the causative agent of contagious bovine pleuropneumonia (CBPP)PUB | DOI | WoS | PubMed | Europe PMC
Westberg, J, The genome sequence of Mycoplasma mycoides subsp mycoides SC type strain PG1(T), the causative agent of contagious bovine pleuropneumonia (CBPP). GENOME RESEARCH 14 (2). , 2004 -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608953A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspectivePUB | DOI | WoS | PubMed | Europe PMC
Rendulic, S, A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective. SCIENCE 303 (5658). , 2004 -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1605656Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport systemPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Szczepanowski, Rafael, Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport system. Microbiology 150 (11). , 2004 -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607424Development of joint application strategies for two microbial gene findersPUB | DOI | WoS | PubMed | Europe PMC
McHardy, A. C., Development of joint application strategies for two microbial gene finders. BIOINFORMATICS 20 (10). , 2004 -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609260EMMA: a platform for consistent storage and efficient analysis of microarray dataPUB | DOI | WoS | PubMed | Europe PMC
Dondrup, M., EMMA: a platform for consistent storage and efficient analysis of microarray data. JOURNAL OF BIOTECHNOLOGY 106 (2-3). , 2003 -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609286Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biologyPUB | DOI | WoS | PubMed | Europe PMC
Goesmann, Alexander, Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology. JOURNAL OF BIOTECHNOLOGY 106 (2-3). , 2003 -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609251Whole genome shotgun sequencing guided-by bioinformatics pipelines - An optimized approach for an established techniquePUB | DOI | WoS | PubMed | Europe PMC
Kaiser, O., Whole genome shotgun sequencing guided-by bioinformatics pipelines - An optimized approach for an established technique. JOURNAL OF BIOTECHNOLOGY 106 (2-3). , 2003 -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609272Bioinformatics support for high-throughput proteomicsPUB | DOI | WoS | PubMed | Europe PMC
Wilke, A., Bioinformatics support for high-throughput proteomics. JOURNAL OF BIOTECHNOLOGY 106 (2-3). , 2003 -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612324The 79,370-bp conjugative plasmid pB4 consists of an IncP-1 beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite antibiotic efflux system of the resistance-nodulation-division familyPUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
Tauch, Andreas, The 79,370-bp conjugative plasmid pB4 consists of an IncP-1 beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite antibiotic efflux system of the resistance-nodulation-division family. Molecular Genetics and Genomics 268 (5). , 2003 -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880GenDB - an open source genome annotation system for prokaryote genomesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Meyer, Folker, GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research 31 (8). , 2003 -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1895035The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitaminsPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Kalinowski, Jörn, The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins. Journal of Biotechnology 104 (1-3). , 2003 -
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615366PathFinder: reconstruction and dynamic visualization of metabolic pathwaysPUB | DOI | WoS | PubMed | Europe PMC
Goesmann, Alexander, PathFinder: reconstruction and dynamic visualization of metabolic pathways. BIOINFORMATICS 18 (1). , 2002