Alexander Goesmann
alexander.goesmann@uni-bielefeld.dehttps://orcid.org/0000-0002-7086-2568
PEVZ-ID
158 Publikationen
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957996Wibberg D, Genzel F, Verwaaijen B, Blom J, Rupp O, Goesmann A, Zrenner R, Grosch R, Pühler A, Schlüter A (2021)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14.
Journal of Fungi 7(10): 832. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919320Cardoso SD, Goncalves D, Goesmann A, Canario AVM, Oliveira RF (2018)PUB | DOI | WoS | PubMed | Europe PMC
Temporal variation in brain transcriptome is associated with the expression of female mimicry as a sequential male alternative reproductive tactic in fish.
MOLECULAR ECOLOGY 27(3): 789-803. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916526Golyshina OV, Tran H, Reva ON, Lemak S, Yakunin AF, Goesmann A, Nechitaylo TY, LaCono V, Smedile F, Slesarev A, Rojo D, Barbas C, Ferrer M, Yakimov MM, Golyshin PN (2017)PUB | DOI | WoS | PubMed | Europe PMC
Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum Y-T.
SCIENTIFIC REPORTS 7(1): 3682. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976Blifernez-Klassen O, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J, Kruse O (2016)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa).
Genome Announcements 4(3): e00524-16. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2731279Huja S, Oren Y, Trost E, Brzuszkiewicz E, Biran D, Blom J, Goesmann A, Gottschalk G, Hacker J, Ron EZ, Dobrindt U (2015)PUB | DOI | WoS | PubMed | Europe PMC
Genomic Avenue to Avian Colisepticemia.
mBio 6(1): e01681-14. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035Arnold M, Wibberg D, Blom J, Schatschneider S, Winkler A, Kutter Y, Rückert C, Albersmeier A, Albaum S, Goesmann A, Zange S, Heesemann J, Pühler A, Hogardt M, Vorhölter F-J (2015)PUB | DOI | WoS | PubMed | Europe PMC
Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum.
Genome announcements 3(4): e00680-15. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900131Pauli M, Chakarov N, Rupp O, Kalinowski J, Goesmann A, Sorenson M, Krüger O, Hoffman J (2015)PUB | PDF | DOI | WoS | PubMed | Europe PMC
De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite.
BMC Genomics 16(1): 1038. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782605Rupp O, Brinkrolf K, Buerth C, Kunigo M, Schneider J, Jaenicke S, Goesmann A, Pühler A, Jaeger K-E, Ernst JF (2015)PUB | DOI | WoS | PubMed | Europe PMC
The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms.
Journal of Biotechnology 211: 20-30. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2730423Chakarov N, Linke B, Boerner M, Goesmann A, Krüger O, Hoffman J (2015)PUB | DOI | WoS | PubMed | Europe PMC
Apparent vector-mediated parent-to-offspring transmission in an avian malaria-like parasite.
Molecular Ecology 24(6): 1355-1363. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944Tielen P, Wibberg D, Blom J, Rosin N, Meyer A-K, Bunk B, Schobert M, Tüpker R, Schatschneider S, Rückert C, Albersmeier A, Goesmann A, Vorhölter F-J, Jahn D, Pühler A (2014)PUB | DOI | PubMed | Europe PMC
Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection.
Genome announcements 2(1). -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643946Dohm JC, Minoche AE, Holtgräwe D, Capella-Gutiérrez S, Zakrzewski F, Tafer H, Rupp O, Rosleff Sörensen T, Stracke R, Reinhardt R, Goesmann A, Kraft T, Schulz B, Stadler PF, Schmidt T, Gabaldón T, Lehrach H, Weisshaar B, Himmelbauer H (2014)PUB | DOI | WoS | PubMed | Europe PMC
The genome of the recently domesticated crop plant sugar beet (Beta vulgaris).
Nature 505(7484): 546-549. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2690174Christiansen G, Goesmann A, Kurmayer R (2014)PUB | DOI | WoS | PubMed | Europe PMC
Elucidation of insertion elements carried on plasmids and in vitro construction of shuttle vectors from the toxic cyanobacterium planktothrix.
Applied and environmental microbiology 80(16): 4887-4897. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694652Bonte A, Neuweger H, Goesmann A, Thonar C, Mäder P, Langenkämper G, Niehaus K (2014)PUB | DOI | WoS | PubMed | Europe PMC
Metabolite profiling on wheat grain to enable a distinction of samples from organic and conventional farming systems.
Journal of the science of food and agriculture 94(13): 2605-2612. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552Becker J, Timmermann C, Rupp O, Albaum S, Brinkrolf K, Goesmann A, Pühler A, Tauch A, Noll T (2014)PUB | DOI | WoS | PubMed | Europe PMC
Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.).
Journal of biotechnology 178: 23-31. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773Rupp O, Becker J, Brinkrolf K, Timmermann C, Borth N, Pühler A, Noll T, Goesmann A (2014)PUB | DOI | WoS | PubMed | Europe PMC
Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines.
PLoS ONE 9(1): e85568. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694682Wegmann U, Louis P, Goesmann A, Henrissat B, Duncan SH, Flint HJ (2014)PUB | DOI | WoS | PubMed | Europe PMC
Complete genome of a new Firmicutes species belonging to the dominant human colonic microbiota ('Ruminococcus bicirculans') reveals two chromosomes and a selective capacity to utilize plant glucans.
Environmental microbiology 16(9): 2879-2890. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691732Klippel B, Sahm K, Basner A, Wiebusch S, John P, Lorenz U, Peters A, Abe F, Takahashi K, Kaiser O, Goesmann A, Jaenicke S, Grote R, Horikoshi K, Antranikian G (2014)PUB | DOI | WoS | PubMed | Europe PMC
Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria.
Extremophiles 18(5): 853-863. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2664976Rückert C, Szczepanowski R, Albersmeier A, Goesmann A, Fischer N, Steinkämper A, Pühler A, Biener R, Schwartz D, Kalinowski J (2014)PUB | DOI | WoS | PubMed | Europe PMC
Complete Genome Sequence of the Actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin.
Journal of biotechnology 178: 41-42. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2554079Kuenne C, Billion A, Mraheil MA, Strittmatter A, Daniel R, Goesmann A, Barbuddhe S, Hain T, Chakraborty T (2013)PUB | DOI | WoS | PubMed | Europe PMC
Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome.
BMC Genomics 14(1): 47. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560837Fritzenwanker M, Kuenne C, Billion A, Hain T, Zimmermann K, Goesmann A, Chakraborty T, Domann E (2013)PUB | DOI | PubMed | Europe PMC
Complete Genome Sequence of the Probiotic Enterococcus faecalis Symbioflor 1 Clone DSM 16431.
Genome Announcements 1(1): e00165-12. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2564601Riedel T, Gómez-Consarnau L, Tomasch J, Martin M, Jarek M, González JM, Spring S, Rohlfs M, Brinkhoff T, Cypionka H, Göker M, Fiebig A, Klein J, Goesmann A, Fuhrman JA, Wagner-Döbler I (2013)PUB | DOI | WoS | PubMed | Europe PMC
Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like Protein.
PLOS ONE 8(3): e57487. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309Bolzan de Campos S, Youn J-W, Farina R, Jaenicke S, Jünemann S, Szczepanowski R, Beneduzi A, Vargas LK, Goesmann A, Wendisch VF, Passagilia L (2013)PUB | DOI | WoS | PubMed | Europe PMC
Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation Sequencing.
Microbial Ecology 65(3): 593-601. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908Wibberg D, Jelonek L, Rupp O, Kröber M, Eikmeyer FG, Goesmann A, Hartmann A, Borriss R, Grosch R, Pühler A, Schlüter A (2013)PUB | DOI | WoS | PubMed | Europe PMC
Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14.
Journal of Biotechnology 167(2): 142-155. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2606943Vences M, Hauswaldt S, Steinfartz S, Rupp O, Goesmann A, Künzel S, Orozco-Terwengel P, Vieites DR, Nieto-Roman S, Haas S, Laugsch C, Gehara M, Bruchmann S, Pabijan M, Ludewig A-K, Rudert D, Angelini C, Borkin LJ, Crochet P-A, Crottini A, Dubois A, Ficetola GF, Galán P, Geniez P, Hachtel M, Jovanovic O, Litvinchuk SN, Lymberakis P, Ohler A, Smirnov NA (2013)PUB | DOI | WoS | PubMed | Europe PMC
Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana.
Molecular phylogenetics and evolution 68(3): 657-670. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2602756Smits THM, Rezzonico F, López MM, Blom J, Goesmann A, Frey JE, Duffy B (2013)PUB | DOI | WoS | PubMed | Europe PMC
Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888(T) as assessed by comparative genomics.
Systematic and applied microbiology 36(7): 449-456. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228Jünemann S, Sedlazeck FJ, Prior K, Albersmeier A, John U, Kalinowski J, Mellmann A, Goesmann A, von Haeseler A, Stoye J, Harmsen D (2013)PUB | DOI | WoS | PubMed | Europe PMC
Corrigendum: Updating benchtop sequencing performance comparison.
Nature biotechnology 31(12): 1148. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946Köhler KAK, Rückert C, Schatschneider S, Vorhölter F-J, Szczepanowski R, Blank LM, Niehaus K, Goesmann A, Pühler A, Kalinowski J, Schmid A (2013)PUB | DOI | WoS | PubMed | Europe PMC
Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil.
Journal of Biotechnology 168(4): 729-730. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2622238Barbe S, Llop P, Blom J, Cabrefiga J, Goesmann A, Duffy B, Montesinos E, Smits THM, Lopez MM (2013)PUB | DOI | WoS
Complete sequence of Erwinia piriflorinigrans plasmids pEPIR37 and pEPIR5 and role of pEPIR37 in pathogen virulence.
Plant Pathology 62(4): 786-798. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2615581Brinkrolf K, Rupp O, Laux H, Kollin F, Ernst W, Linke B, Kofler R, Romand S, Hesse F, Budach WE, Galosy S, Müller D, Noll T, Wienberg J, Jostock T, Leonard M, Grillari J, Tauch A, Goesmann A, Helk B, Mott JE, Pühler A, Borth N (2013)PUB | DOI | WoS | PubMed | Europe PMC
Chinese hamster genome sequenced from sorted chromosomes.
Nature Biotechnology 31(8): 694-695. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576080Toepel J, Illmer-Kephalides M, Jaenicke S, Straube J, May P, Goesmann A, Kruse O (2013)PUB | DOI | WoS | PubMed | Europe PMC
New insights into Chlamydomonas reinhardtii hydrogen production processes by combined microarray/RNA-seq transcriptomics.
Plant Biotechnology Journal 11(6): 717-733. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631956Rückert C, Szczepanowski R, Albersmeier A, Goesmann A, Iftime D, Musiol EM, Blin K, Wohlleben W, Pühler A, Kalinowski J, Weber T (2013)PUB | DOI | WoS | PubMed | Europe PMC
Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids.
Journal of Biotechnology 168(4): 739-740. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922Jünemann S, Sedlazeck FJ, Prior K, Albersmeier A, John U, Kalinowski J, Mellmann A, Goesmann A, von Haeseler A, Stoye J, Harmsen D (2013)PUB | DOI | WoS | PubMed | Europe PMC
Updating benchtop sequencing performance comparison.
Nature Biotechnology 31(4): 294-296. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557938Mann RA, Smits THM, Bühlmann A, Blom J, Goesmann A, Frey JE, Plummer KM, Beer SV, Luck J, Duffy B, Rodoni B (2013)PUB | DOI | WoS | PubMed | Europe PMC
Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core.
PLOS ONE 8(2): e55644. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668Bogen C, Al-Dilaimi A, Albersmeier A, Wichmann J, Grundmann M, Rupp O, Lauersen KJ, Blifernez-Klassen O, Kalinowski J, Goesmann A, Mussgnug JH, Kruse O (2013)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
BMC Genomics 14(1): 926. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610129Kessler N, Bonte A, Langenkämper G, Niehaus K, Goesmann A, Nattkemper TW (2013)PUB | DOI | WoS | PubMed | Europe PMC
MeltDB 2.0 - Advances of the metabolomics software system.
Bioinformatics 29(19): 2452-2459. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202Zakrzewski M, Bekel T, Ander C, Pühler A, Rupp O, Stoye J, Schlüter A, Goesmann A (2013)PUB | DOI | WoS | PubMed | Europe PMC
MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets.
Journal of Biotechnology 167(2): 156-165. -
2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2538625Bonte A, Kessler N, Nattkemper TW, Goesmann A, Cecile T, Mäder P, Niehaus K, Langenkämper G (In Press)PUB
Einsatz von Protein- und Metabolit-Profiling-Methoden zur Unterscheidung von ökologischem und konventionellem Weizen.
Presented at the 12. Wissenschaftstagung Ökologischer Landbau „Ideal und Wirklichkeit – Perspektiven Ökologischer Landbewirtschaftung“, Bonn, Germany. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230Jünemann S, Prior K, Szczepanowski R, Harks I, Ehmke B, Goesmann A, Stoye J, Harmsen D (2012)PUB | DOI | WoS | PubMed | Europe PMC
Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing.
PLoS ONE 7(8): e41606. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500959Kahlke T, Goesmann A, Hjerde E, Willassen NP, Haugen P (2012)PUB | DOI | WoS | PubMed | Europe PMC
Unique core genomes of the bacterial family vibrionaceae: Insights into niche adaptation and speciation.
BMC genomics 13(1): 179. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500966Hain T, Ghai R, Billion A, Kuenne CT, Steinweg C, Izar B, Mohamed W, Mraheil M, Domann E, Schaffrath S, Kärst U, Goesmann A, Oehm S, Pühler A, Merkl R, Vorwerk S, Glaser P, Garrido P, Rusniok C, Buchrieser C, Goebel W, Chakraborty T (2012)PUB | DOI | WoS | PubMed | Europe PMC
Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes.
BMC Genomics 13(1): 144. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618Zakrzewski M, Goesmann A, Jaenicke S, Jünemann S, Eikmeyer FG, Szczepanowski R, Al-Soud WA, Sørensen S, Pühler A, Schlüter A (2012)PUB | DOI | WoS | PubMed | Europe PMC
Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing.
Journal of Biotechnology 158(4): 248-258. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500990Rose MT, Rose TJ, Pariasca-Tanaka J, Yoshihashi T, Neuweger H, Goesmann A, Frei M, Wissuwa M (2012)PUB | DOI | WoS | PubMed | Europe PMC
Root metabolic response of rice (Oryza sativa L.) genotypes with contrasting tolerance to zinc deficiency and bicarbonate excess.
Planta 236(4): 959-973. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490949Zschuttig A, Zimmermann K, Blom J, Goesmann A, Pohlmann C, Gunzer F (2012)PUB | DOI | WoS | PubMed | Europe PMC
Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10.
PLoS ONE 7(3): e33351. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471858Ausec L, Zakrzewski M, Goesmann A, Schlüter A, Mandic-Mulec I (2012)PUB | DOI | PubMed | Europe PMC
Correction: bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes.
PLoS ONE 7(1). -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535Heinl S, Wibberg D, Eikmeyer FG, Szczepanowski R, Blom J, Linke B, Goesmann A, Grabherr R, Schwab H, Pühler A, Schlüter A (2012)PUB | DOI | WoS | PubMed | Europe PMC
Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage.
Journal of Biotechnology 161(2): 153-166. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471681Rademacher A, Zakrzewski M, Schlüter A, Schonberg M, Szczepanowski R, Goesmann A, Pühler A, Klocke M (2012)PUB | DOI | WoS | PubMed | Europe PMC
Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing.
FEMS Microbiology Ecology 79(3): 785-799. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513256Filippini M, Qi W, Blom J, Goesmann A, Smits THM, Bagheri HC (2012)PUB | DOI | WoS | PubMed | Europe PMC
Genome Sequence of Fibrella aestuarina BUZ 2T, a Filamentous Marine Bacterium.
Journal of bacteriology 194(13): 3555. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232Trötschel C, Albaum S, Wolff D, Schröder S, Goesmann A, Nattkemper TW, Poetsch A (2012)PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation.
Molecular & Cellular Proteomics 11(8): 512-526. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2487853Brankatschk K, Blom J, Goesmann A, Smits THM, Duffy B (2012)PUB | DOI | WoS | PubMed | Europe PMC
Comparative genomic analysis of Salmonella enterica subsp. enterica serovar Weltevreden foodborne strains with other serovars.
International journal of food microbiology 155(3): 247-256. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2474002Schneider J, Rupp O, Trost E, Jaenicke S, Passoth V, Goesmann A, Tauch A, Brinkrolf K (2012)PUB | DOI | WoS | PubMed | Europe PMC
Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities.
FEMS Yeast Research 12(3): 382-386. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526Hackl M, Jadhav V, Jakobi T, Rupp O, Brinkrolf K, Goesmann A, Pühler A, Noll T, Borth N, Grillari J (2012)PUB | DOI | WoS | PubMed | Europe PMC
Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines.
Journal of Biotechnology 158(3): 151-155. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255Persicke M, Rückert C, Plassmeier J, Stutz L, Kessler N, Kalinowski J, Goesmann A, Neuweger H (2012)PUB | DOI | WoS
MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example.
Metabolomics 8(2): 310-322. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774Schneider J, Andrea H, Blom J, Jaenicke S, Rückert C, Schorsch C, Szczepanowski R, Farwick M, Goesmann A, Pühler A, Schaffer S, Tauch A, Köhler T, Brinkrolf K (2012)PUB | DOI | WoS | PubMed | Europe PMC
Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10.
Eukaryotic Cell 11(12): 1582-1583. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500937Rezzonico F, Braun-Kiewnick A, Mann RA, Rodoni B, Goesmann A, Duffy B, Smits THM (2012)PUB | DOI | WoS | PubMed | Europe PMC
Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovora.
Molecular plant pathology 13(8): 975-984. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501081De Maayer P, Chan WY, Rezzonico F, Bühlmann A, Venter SN, Blom J, Goesmann A, Frey JE, Smits THM, Duffy B, Coutinho TA (2012)PUB | DOI | WoS | PubMed | Europe PMC | GenBank
Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342.
Journal of Bacteriology 194(6): 1615-1616. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529610Schork S, Schlüter A, Blom J, Schneiker-Bekel S, Pühler A, Goesmann A, Frosch M, Schoen C (2012)PUB | DOI | WoS | PubMed | Europe PMC
Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198.
Journal of Bacteriology 194(18): 5144-5145. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526281Zischka M, Kuenne C, Blom J, Dabrowski PW, Linke B, Hain T, Nitsche A, Goesmann A, Larsen J, Jensen LB, Witte W, Werner G (2012)PUB | DOI | WoS | PubMed | Europe PMC
Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32.
Journal of Bacteriology 194(19): 5490-5491. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500946Mann RA, Blom J, Bühlmann A, Plummer KM, Beer SV, Luck JE, Goesmann A, Frey JE, Rodoni BC, Duffy B, Smits THM (2012)PUB | DOI | WoS | PubMed | Europe PMC
Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element.
Gene 504(1): 6-12. -
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768Becker J, Timmermann C, Jakobi T, Rupp O, Szczepanowski R, Hackl M, Goesmann A, Tauch A, Borth N, Grillari J, Pühler A, Noll T, Brinkrolf K (2011)PUB | DOI
Next-generation sequencing of the CHO cell transcriptome.
BMC Proceedings 5(Suppl. 8): P6. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093398Brankatschk K, Blom J, Goesmann A, Smits THM, Duffy B (2011)PUB | DOI | WoS | PubMed | Europe PMC
Genome of a European Fresh-Vegetable Food Safety Outbreak Strain of Salmonella enterica subsp enterica Serovar Weltevreden.
Journal of Bacteriology 193(8): 2066. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276Jaenicke S, Ander C, Bekel T, Bisdorf R, Dröge M, Gartemann K-H, Jünemann S, Kaiser O, Krause L, Tille F, Zakrzewski M, Pühler A, Schlüter A, Goesmann A (2011)PUB | DOI | WoS | PubMed | Europe PMC
Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing.
PLoS ONE 6(1): e14519. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2411830Ausec L, Zakrzewski M, Goesmann A, Schlüter A, Mandic-Mulec I (2011)PUB | DOI | WoS | PubMed | Europe PMC
Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes.
PLoS ONE 6(10): e25724. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063Albaum S, Hahne H, Otto A, Haußmann U, Becher D, Poetsch A, Goesmann A, Nattkemper TW (2011)PUB | PDF | DOI | WoS | PubMed | Europe PMC
A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study.
Proteome Science 9(1): 30. -
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634Pothier JF, Vorhölter F-J, Blom J, Goesmann A, Pühler A, Smits TH, Duffy B (2011)PUB | DOI | WoS | PubMed | Europe PMC
The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis.
FEMS Microbiology Letters 323(1): 52-60. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B, Schneiker-Bekel S, Szczepanowski R, Goesmann A, Setubal JC, Schmitt R, Pühler A, Schlüter A (2011)PUB | DOI | WoS | PubMed | Europe PMC
Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid.
Journal of Biotechnology 155(1): 50-62. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371Küberl A, Schneider J, Thallinger GG, Anderl I, Wibberg D, Hajek T, Jaenicke S, Brinkrolf K, Goesmann A, Szczepanowski R, Pühler A, Schwab H, Glieder A, Pichler H (2011)PUB | DOI | WoS | PubMed | Europe PMC
High-quality genome sequence of Pichia pastoris CBS7435.
Journal of Biotechnology 154(4): 312-320. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576Becker J, Hackel M, Jakobi T, Rupp O, Schneider J, Szczepanowski R, Bekel T, Borth N, Goesmann A, Grillari J, Kaltschmidt C, Noll T, Pühler A, Tauch A, Brinkrolf K (2011)PUB | DOI | WoS | PubMed | Europe PMC
Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing.
Journal of Biotechnology 156(3): 227-235. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289576Thomas V, Bertelli C, Collyn F, Casson N, Telenti A, Goesmann A, Croxatto A, Greub G (2011)PUB | DOI | WoS | PubMed | Europe PMC
Lausannevirus, a giant amoebal virus encoding histone doublets.
Environmental Microbiology 13(6): 1454-1466. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445Schneider J, Blom J, Jaenicke S, Linke B, Brinkrolf K, Neuweger H, Tauch A, Goesmann A (2011)PUB | DOI | WoS | PubMed | Europe PMC
RAPYD - Rapid Annotation Platform for Yeast Data.
Journal of Biotechnology 155(1): 118-126. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2447730Gonzalez JM, Pinhassi J, Fernández-Gómez B, Coll-Llado M, Gonzalez-Velazquez M, Puigbo P, Jaenicke S, Gomez-Consarnau L, Fernandez-Guerra A, Goesmann A, Pedros-Alio C (2011)PUB | DOI | WoS | PubMed | Europe PMC
Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. MED134.
Applied and Environmental Microbiology 77(24): 8676-8686. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307104Smits THM, Rezzonico F, Kamber T, Blom J, Goesmann A, Ishimaru CA, Frey JE, Stockwell VO, Duffy B (2011)PUB | DOI | WoS | PubMed | Europe PMC
Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1.
PLoS ONE 6(7): e22247. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326455Krol E, Blom J, Winnebald J, Berhoerster A, Barnett MJ, Goesmann A, Baumbach J, Becker A (2011)PUB | DOI | WoS | PubMed | Europe PMC
RhizoRegNet-A database of rhizobial transcription factors and regulatory networks.
Journal of Biotechnology 155(1): 127-134. -
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2397780Doppmeier D, Stracke R, Lutter P, Goesmann A, Niehaus K, Weisshaar B (2011)PUB
Using the GUS Reporter Gene for Quantitative Studies of Promotor Activity in A.thaliana Seedlings.
Presented at the ICSB 2011 Heidelberg/Mannheim, Heidelberg/Mannheim, Germany. -
2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751Jaenicke S, Zakrzewski M, Jünemann S, Pühler A, Goesmann A, Schlüter A (2011)PUB | DOI
Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods.
In: Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats. de Bruijn FJ (Ed); Hoboken, NJ, USA: Wiley-Blackwell: 403-414. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2290032Joseph B, Schwarz RF, Linke B, Blom J, Becker A, Claus H, Goesmann A, Frosch M, Mueller T, Vogel U, Schoen C (2011)PUB | DOI | WoS | PubMed | Europe PMC
Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome.
PLoS ONE 6(4): e18441. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093389Schoen C, Weber-Lehmann J, Blom J, Joseph B, Goesmann A, Strittmatter A, Frosch M (2011)PUB | DOI | WoS | PubMed | Europe PMC
Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594.
Journal of Bacteriology 193(8): 2064-2065. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289902De Gregoris TB, Rupp O, Klages S, Knaust F, Bekel T, Kube M, Burgess JG, Arnone MI, Goesmann A, Reinhardt R, Clare AS (2011)PUB | DOI | WoS | PubMed | Europe PMC
Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite.
Biofouling 27(4): 367-374. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952Blom J, Jakobi T, Doppmeier D, Jaenicke S, Kalinowski J, Stoye J, Goesmann A (2011)PUB | DOI | WoS | PubMed | Europe PMC
Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming.
Bioinformatics 27(10): 1351-1358. -
2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892Schneiker-Bekel S, Wibberg D, Bekel T, Blom J, Linke B, Neuweger H, Stiens M, Vorhölter F-J, Weidner S, Goesmann A, Pühler A, Schlüter A (In Press)PUB | DOI | WoS | PubMed | Europe PMC
The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome.
Journal of Biotechnology 155(1): 20-33. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Höner zu Siederdissen C, Bort JAH, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Pühler A, Borth N, Grillari J (2011)PUB | DOI | WoS | PubMed | Europe PMC
Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering.
Journal of Biotechnology 153(1-2): 62-75. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2036058Margaret I, Becker A, Blom J, Bonilla I, Goesmann A, Göttfert M, Lloret J, Mittard-Runte V, Rückert C, Ruiz-Sainz J-E, Vinardell JM, Weidner S (2011)PUB | DOI | WoS | PubMed | Europe PMC
Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean.
Journal of Biotechnology 155(1): 11-19. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578Linke B, Giegerich R, Goesmann A (2011)PUB | DOI | WoS | PubMed | Europe PMC
Conveyor: a workflow engine for bioinformatic analyses.
Bioinformatics 27(7): 903-911. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1966439Trost E, Ott L, Schneider J, Schröder J, Jaenicke S, Goesmann A, Husemann P, Stoye J, Alves Dorella F, Souza Rocha F, de Castro Soares S, D'Afonseca V, Miyoshi A, Ruiz J, Silva A, Azevedo V, Burkovski A, Guiso N, Join-Lambert OF, Kayal S, Tauch A (2010)PUB | DOI | WoS | PubMed | Europe PMC
The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence.
BMC Genomics 11(1): 728. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794039Kuenne C, Voget S, Pischimarov J, Oehm S, Goesmann A, Daniel R, Hain T, Chakraborty T (2010)PUB | DOI | WoS | PubMed | Europe PMC
Comparative Analysis of Plasmids in the Genus Listeria.
PLOS ONE 5(9): e12511. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795508Bertelli C, Collyn F, Croxatto A, Rückert C, Polkinghorne A, Kebbi-Beghdadi C, Goesmann A, Vaughan L, Greub G (2010)PUB | DOI | WoS | PubMed | Europe PMC
The Waddlia Genome: A Window into Chlamydial Biology.
PLOS ONE 5(5): e10890. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795628Smits THM, Rezzonico F, Pelludat C, Goesmann A, Frey JE, Duffy B (2010)PUB | DOI | WoS | PubMed | Europe PMC
Genomic and phenotypic characterization of a nonpigmented variant of Pantoea vagans biocontrol strain C9-1 lacking the 530-kb megaplasmid pPag3.
FEMS MICROBIOLOGY LETTERS 308(1): 48-54. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929692Schneider J, Vorhölter F-J, Trost E, Blom J, Musa YR, Neuweger H, Niehaus K, Schatschneider S, Tauch A, Goesmann A (2010)PUB | DOI | WoS | PubMed | Europe PMC
CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks.
Genetics and Molecular Research 9(3): 1660-1672. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275Trost E, Götker S, Schneider J, Schneiker-Bekel S, Szczepanowski R, Tilker A, Viehöver P, Arnold W, Bekel T, Blom J, Gartemann K-H, Linke B, Goesmann A, Pühler A, Shukla SK, Tauch A (2010)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion.
BMC Genomics 11(1): 91. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785504Yang I, John U, Beszteri S, Glöckner G, Krock B, Goesmann A, Cembella AD (2010)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutum.
BMC Genomics 11(1): 248. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796445Smits THM, Rezzonico F, Kamber T, Blom J, Goesmann A, Frey JE, Duffy B (2010)PUB | DOI | WoS | PubMed | Europe PMC
Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp.
MOLECULAR PLANT-MICROBE INTERACTIONS 23(4): 384-393. -
2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907Mittard-Runte V, Bekel T, Blom J, Dondrup M, Henckel K, Jaenicke S, Krause L, Linke B, Neuweger H, Schneiker-Bekel S, Goesmann A (2010)PUB | DOI
Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions.
In: Introduction to Marine Genomics (Advances in Marine Genomics). Cock JM, Tessmar-Raible K, Boyen C, Viard F (Eds);1. Netherlands: Springer Netherlands: 315-396. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796644Smits THM, Jaenicke S, Rezzonico F, Kamber T, Goesmann A, Frey JE, Duffy B (2010)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity.
BMC Genomics 11(1): 2. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785579Farnbacher M, Jahns T, Willrodt D, Daniel R, Haas R, Goesmann A, Kurtz S, Rieder G (2010)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8.
BMC Genomics 11(1): 335. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588692Steinweg C, Kuenne CT, Billion A, Mraheil MA, Domann E, Ghai R, Barbuddhe SB, Kaerst U, Goesmann A, Pühler A, Weisshaar B, Wehland J, Lampidis R, Kreft J, Goebel W, Chakraborty T, Hain T (2010)PUB | DOI | WoS | PubMed | Europe PMC
Complete Genome Sequence of Listeria seeligeri, a Nonpathogenic Member of the Genus Listeria.
Journal of Bacteriology 192(5): 1473-1474. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894319Henckel K, Küster H, Stutz L, Goesmann A (2010)PUB | PDF | DOI | PubMed | Europe PMC
MediPlEx - a tool to combine in silico and experimental gene expression profiles of the model legume Medicago truncatula.
BMC Research Notes 3(1): 262. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968262Smits THM, Rezzonico F, Kamber T, Goesmann A, Ishimaru CA, Stockwell VO, Frey JE, Duffy B (2010)PUB | DOI | WoS | PubMed | Europe PMC
Genome Sequence of the Biocontrol Agent Pantoea vagans Strain C9-1.
Journal of Bacteriology 192(24): 6486-6487. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990186Gehlenborg N, O'Donoghue SI, Baliga NS, Goesmann A, Hibbs MA, Kitano H, Kohlbacher O, Neuweger H, Schneider R, Tenenbaum D, Gavin A-C (2010)PUB | DOI | WoS | PubMed | Europe PMC
Visualization of omics data for systems biology.
Nat Methods 7(3s): S56-S68. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110Joseph B, Schneiker-Bekel S, Schramm-Glueck A, Blom J, Claus H, Linke B, Schwarz RF, Becker A, Goesmann A, Frosch M, Schoen C (2010)PUB | DOI | WoS | PubMed | Europe PMC
Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence.
JOURNAL OF BACTERIOLOGY 192(20): 5363-5377. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634097Strittmatter AW, Liesegang H, Rabus R, Decker I, Amann J, Andres S, Henne A, Fricke WF, Martinez-Arias R, Bartels D, Goesmann A, Krause L, Pühler A, Klenk H-P, Richter M, Schueler M, Gloeckner FO, Meyerdierks A, Gottschalk G, Amann R (2009)PUB | DOI | WoS | PubMed | Europe PMC
Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide.
ENVIRONMENTAL MICROBIOLOGY 11(5): 1038-1055. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2397394Goesmann A, Schneider J, Trost E, Tauch A (2009)PUB
Entschlüsselung mikrobieller Genomsequenzen im Schnellverfahren.
BIOspektrum 15(3): 279-281. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783022Krawczyk J, Goesmann A, Nolte R, Werber M, Weisshaar B (2009)PUB | PDF | DOI | PubMed | Europe PMC
Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format.
Source Code for Biology and Medicine 4(1): 4. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813Neuweger H, Persicke M, Albaum S, Bekel T, Dondrup M, Hüser AT, Winnebald J, Schneider J, Kalinowski J, Goesmann A (2009)PUB | PDF | DOI | PubMed | Europe PMC
Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example.
BMC Systems Biology 3(1): 82. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187Blom J, Albaum S, Doppmeier D, Pühler A, Vorhölter F-J, Zakrzewski M, Goesmann A (2009)PUB | PDF | DOI | WoS | PubMed | Europe PMC
EDGAR: a software framework for the comparative analysis of prokaryotic genomes.
BMC Bioinformatics 10(1): 154. -
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634467Becker A, Barnett MJ, Capela D, Dondrup M, Kamp P-B, Krol E, Linke B, Rüberg S, Runte K, Schroeder BK, Weidner S, Yurgel SN, Batut J, Long SR, Pühler A, Goesmann A (2009)PUB | DOI | WoS | PubMed | Europe PMC
A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data.
JOURNAL OF BIOTECHNOLOGY 140(1-2): 45-50. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314Diaz NN, Krause L, Goesmann A, Niehaus K, Nattkemper TW (2009)PUB | PDF | DOI | WoS | PubMed | Europe PMC
TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach.
BMC Bioinformatics 10(1): 56. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321Dondrup M, Albaum S, Griebel T, Henckel K, Jünemann S, Kahlke T, Kleindt CK, Kuester H, Linke B, Mertens D, Mittard-Runte V, Neuweger H, Runte KJ, Tauch A, Tille F, Pühler A, Goesmann A (2009)PUB | PDF | DOI | WoS | PubMed | Europe PMC
EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data.
BMC Bioinformatics 10(1): 50. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098Gerlach W, Jünemann S, Tille F, Goesmann A, Stoye J (2009)PUB | PDF | DOI | WoS | PubMed | Europe PMC
WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads.
BMC Bioinformatics 10(1): 430. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531Albaum S, Neuweger H, Fraenzel B, Lange S, Mertens D, Troetschel C, Wolters D, Kalinowski J, Nattkemper TW, Goesmann A (2009)PUB | DOI | WoS | PubMed | Europe PMC
Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments.
Bioinformatics 25(23): 3128-3134. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589936Wegmann U, Overweg K, Horn N, Goesmann A, Narbad A, Gasson MJ, Shearman C (2009)PUB | DOI | WoS | PubMed | Europe PMC
Complete Genome Sequence of Lactobacillus johnsonii FI9785, a Competitive Exclusion Agent against Pathogens in Poultry.
JOURNAL OF BACTERIOLOGY 191(22): 7142-7143. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447Bekel T, Henckel K, Küster H, Meyer F, Mittard-Runte V, Neuweger H, Paarmann D, Rupp O, Zakrzewski M, Pühler A, Stoye J, Goesmann A (2009)PUB | DOI | WoS | PubMed | Europe PMC
The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies.
Journal of Biotechnology 140(1-2): 3-12. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634461Dondrup M, Hueser AT, Mertens D, Goesmann A (2009)PUB | DOI | WoS | PubMed | Europe PMC
An evaluation framework for statistical tests on microarray data.
JOURNAL OF BIOTECHNOLOGY 140(1-2): 18-26. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783292Gross R, Guzman CA, Sebaihia M, Martins dos Santos VAP, Pieper DH, Koebnik R, Lechner M, Bartels D, Buhrmester J, Choudhuri JV, Ebensen T, Gaigalat L, Herrmann S, Khachane AN, Larisch C, Link S, Linke B, Meyer F, Mormann S, Nakunst D, Rückert C, Schneiker-Bekel S, Schulze K, Vorhölter F-J, Yevsa T, Engle JT, Goldman WE, Pühler A, Göbel UB, Goesmann A, Blöcker H, Kaiser O, Martinez-Arias R (2008)PUB | PDF | DOI | WoS | PubMed | Europe PMC
The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae.
BMC Genomics 9(1): 449. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699Neuweger H, Albaum S, Dondrup M, Persicke M, Watt T, Niehaus K, Stoye J, Goesmann A (2008)PUB | DOI | WoS | PubMed | Europe PMC
MeltDB: a software platform for the analysis and integration of metabolomics experiment data.
Bioinformatics 24(23): 2726-2732. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592024Vorhölter F-J, Schneiker-Bekel S, Goesmann A, Krause L, Bekel T, Kaiser O, Linke B, Patschkowski T, Rückert C, Schmid J, Sidhu VK, Sieber V, Tauch A, Watt SA, Weisshaar B, Becker A, Niehaus K, Pühler A (2008)PUB | DOI | WoS | PubMed | Europe PMC
The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis.
Journal of Biotechnology 134(1-2): 33-45. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257Schoen C, Blom J, Claus H, Schramm-Glueck A, Brandt P, Mueller T, Goesmann A, Joseph B, Konietzny S, Kurzai O, Schmitt C, Friedrich T, Linke B, Vogel U, Frosch M (2008)PUB | DOI | WoS | PubMed | Europe PMC | GenBank
Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105(9): 3473-3478. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009Krause L, Diaz NN, Edwards RA, Gartemann K-H, Krömeke H, Neuweger H, Pühler A, Runte KJ, Schlüter A, Stoye J, Szczepanowski R, Tauch A, Goesmann A (2008)PUB | DOI | WoS | PubMed | Europe PMC
Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor.
JOURNAL OF BIOTECHNOLOGY 136(1-2): 91-101. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585956Stiens M, Becker A, Bekel T, Gödde V, Goesmann A, Niehaus K, Schneiker-Bekel S, Selbitschka W, Weidner S, Schlüter A, Pühler A (2008)PUB | DOI | WoS | PubMed | Europe PMC
Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11.
Journal of Biotechnology 136(1-2): 31-37. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987Schlüter A, Bekel T, Diaz NN, Dondrup M, Eichenlaub R, Gartemann K-H, Krahn I, Krause L, Kroemeke H, Kruse O, Mussgnug JH, Neuweger H, Niehaus K, Pühler A, Runte KJ, Szczepanowski R, Tauch A, Tilker A, Viehöver P, Goesmann A (2008)PUB | DOI | WoS | PubMed | Europe PMC
The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology.
Journal of Biotechnology 136(1-2): 77-90. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918Tauch A, Trost E, Tilker A, Ludewig U, Schneiker-Bekel S, Goesmann A, Arnold W, Bekel T, Brinkrolf K, Brune I, Goetker S, Kalinowski J, Kamp P-B, Lobo FP, Viehöver P, Weisshaar B, Soriano F, Droege M, Pühler A (2008)PUB | DOI | WoS | PubMed | Europe PMC
The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing.
Journal of Biotechnology 136(1-2): 11-21. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785Oehm S, Gilbert D, Tauch A, Stoye J, Goesmann A (2008)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms.
NUCLEIC ACIDS RESEARCH 36(Web Server): W433-W437. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939Tauch A, Schneider J, Szczepanowski R, Tilker A, Viehöver P, Gartemann K-H, Arnold W, Blom J, Brinkrolf K, Brune I, Goetker S, Weisshaar B, Goesmann A, Droege M, Pühler A (2008)PUB | DOI | WoS | PubMed | Europe PMC
Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids.
Journal of Biotechnology 136(1-2): 22-30. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364Krause L, Diaz NN, Goesmann A, Kelley S, Nattkemper TW, Rohwer F, Edwards RA, Stoye J (2008)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Phylogenetic classification of short environmental DNA fragments.
Nucleic Acids Research 36(7): 2230-2239. -
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381Albaum S, Neuweger H, Lange S, Mertens D, Runte K, Kalinowski J, Nattkemper TW, Goesmann A (2008)PUB
ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract).
In: HUPO 7th Annual World Congress. . -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990198Strauch E, Hammerl JA, Konietzny A, Schneiker-Bekel S, Arnold W, Goesmann A, Pühler A, Beutin L (2008)PUB | DOI | WoS | PubMed | Europe PMC
Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7.
Infection and Immunity 76(12): 5466-5477. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327Schneiker-Bekel S, Perlova O, Kaiser O, Gerth K, Alici A, Altmeyer MO, Bartels D, Bekel T, Beyer S, Bode E, Bode HB, Bolten CJ, Choudhuri JV, Doss S, Elnakady YA, Frank B, Gaigalat L, Goesmann A, Groeger C, Gross F, Jelsbak L, Jelsbak L, Kalinowski J, Kegler C, Knauber T, Konietzny S, Kopp M, Krause L, Krug D, Linke B, Mahmud T, Martinez-Arias R, McHardy AC, Merai M, Meyer F, Mormann S, Munoz-Dorado J, Perez J, Pradella S, Rachid S, Raddatz G, Rosenau F, Rückert C, Sasse F, Scharfe M, Schuster SC, Suen G, Treuner-Lange A, Velicer GJ, Vorhölter F-J, Weissman KJ, Welch RD, Wenzel SC, Whitworth DE, Wilhelm S, Wittmann C, Bloecker H, Pühler A, Mueller R (2007)PUB | DOI | WoS | PubMed | Europe PMC
Complete genome sequence of the myxobacterium Sorangium cellulosum.
Nature Biotechnology 25(11): 1281-1289. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631047Meisinger-Henschel C, Schmidt M, Lukassen S, Linke B, Krause L, Konietzny S, Goesmann A, Howley P, Chaplin P, Suter M, Hausmann J (2007)PUB | DOI | WoS | PubMed | Europe PMC
Genomic sequence of chorioallantois vaccinia virus Ankara, the ancestor of modified vaccinia virus Ankara.
JOURNAL OF GENERAL VIROLOGY 88(12): 3249-3259. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754Neuweger H, Baumbach J, Albaum S, Bekel T, Dondrup M, Hüser AT, Kalinowski J, Oehm S, Pühler A, Rahmann S, Weile J, Goesmann A (2007)PUB | PDF | DOI | WoS | PubMed | Europe PMC
CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data.
BMC Systems Biology 1(1): 55. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593149Moran MA, Belas R, Schell MA, Gonzalez JM, Sun F, Sun S, Binder BJ, Edmonds J, Ye W, Orcutt B, Howard EC, Meile C, Palefsky W, Goesmann A, Ren Q, Paulsen I, Ulrich LE, Thompson LS, Saunders E, Buchan A (2007)PUB | DOI | WoS | PubMed | Europe PMC
Ecological genomics of marine roseobacters.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 73(14): 4559-4569. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594098Wegmann U, O'Connell-Motherwy M, Zomer A, Buist G, Shearman C, Canchaya C, Ventura M, Goesmann A, Gasson MJ, Kuipers OP, van Sinderen D, Kok J (2007)PUB | DOI | WoS | PubMed | Europe PMC
Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp cremoris MG1363.
JOURNAL OF BACTERIOLOGY 189(8): 3256-3270. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593268Bahl MI, Hansen LH, Goesmann A, Sorensen SJ (2007)PUB | DOI | WoS | PubMed | Europe PMC
The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established alpha, beta and delta sub-groups.
PLASMID 58(1): 31-43. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739Küster H, Becker A, Firnhaber C, Hohnjec N, Manthey K, Perlick AM, Bekel T, Dondrup M, Henckel K, Goesmann A, Meyer F, Wipf D, Requena N, Hildebrandt U, Hampp R, Nehls U, Krajinski F, Franken P, Pühler A (2007)PUB | DOI | WoS | PubMed | Europe PMC
Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses.
Phytochemistry 68(1): 19-32. -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596976Krause A, Ramakumar A, Bartels D, Battistoni F, Bekel T, Boch J, Boehm M, Friedrich F, Hurek T, Krause L, Linke B, McHardy AC, Sarkar A, Schneiker-Bekel S, Syed AA, Thauer R, Vorhölter F-J, Weidner S, Pühler A, Reinhold-Hurek B, Kaiser O, Goesmann A (2006)PUB | DOI | WoS | PubMed | Europe PMC
Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72.
Nature Biotechnology 24(11): 1385-1391. -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598182Schneiker-Bekel S, dos Santos VAPM, Bartels D, Bekel T, Brecht M, Buhrmester J, Chernikova TN, Denaro R, Ferrer M, Gertler C, Goesmann A, Golyshina OV, Kaminski F, Khachane AN, Lang S, Linke B, McHardy AC, Meyer F, Nechitaylo T, Pühler A, Regenhardt D, Rupp O, Sabirova JS, Selbitschka W, Yakimov MM, Timmis KN, Vorhölter F-J, Weidner S, Kaiser O, Golyshin PN (2006)PUB | DOI | WoS | PubMed | Europe PMC
Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis.
Nature Biotechnology 24(8): 997-1004. -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598354Hohnjec N, Henckel K, Bekel T, Gouzy J, Dondrup M, Goesmann A, Küster H (2006)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatula.
FUNCTIONAL PLANT BIOLOGY 33(8): 737-748. -
2006 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1596017Schoen C, Claus H, Goesmann A, Mueller T, Brandt P, Otto-Karg I, Schramm-Glueck A, Vogel U, Frosch M (2006)PUB | WoS
Genome comparison of non-pathogenic and pathogenic meningococci.
INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY 296(Suppl. 42): 134. -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868701Tauch A, Trost E, Bekel T, Goesmann A, Ludewig U, Pühler A (2006)PUB
Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System.
Biochemica 4: 4-6. -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597316Hain T, Steinweg C, Kuenne CT, Billion A, Ghai R, Chatterjee SS, Domann E, Kaerst U, Goesmann A, Bekel T, Bartels D, Kaiser O, Meyer F, Pühler A, Weisshaar B, Wehland J, Liang C, Dandekar T, Lampidis R, Kreft J, Goebel W, Chakraborty T (2006)PUB | DOI | WoS | PubMed | Europe PMC
Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes.
Journal of Bacteriology 188(23): 8299-8302. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302Bartels D, Kespohl S, Albaum S, Drüke T, Goesmann A, Herold J, Kaiser O, Pühler A, Pfeiffer F, Raddatz G, Stoye J, Meyer F, Schuster SC (2005)PUB | PDF | DOI | WoS | PubMed | Europe PMC
BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison.
Bioinformatics 21(7): 853-859. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601712Thieme F, Koebnik R, Bekel T, Berger C, Boch J, Buttner D, Caldana C, Gaigalat L, Goesmann A, Kay S, Kirchner O, Lanz C, Linke B, McHardy AC, Meyer F, Mittenhuber G, Nies DH, Niesbach-Klosgen U, Patschkowski T, Rückert C, Rupp O, Schneiker-Bekel S, Schuster SC, Vorhölter F-J, Weber E, Pühler A, Bonas U, Bartels D, Kaiser O (2005)PUB | DOI | WoS | PubMed | Europe PMC
Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence.
JOURNAL OF BACTERIOLOGY 187(21): 7254-7266. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773652Overbeek R, Begley T, Butler RM, Choudhuri JV, Chuang H-Y, Cohoon M, Crécy-Lagard V de, Diaz NN, Disz T, Edwards R, Fonstein M, Frank ED, Gerdes S, Glass EM, Goesmann A, Hanson A, Iwata-Reuyl D, Jensen R, Jamshidi N, Krause L, Kubal M, Larsen N, Linke B, McHardy AC, Meyer F, Neuweger H, Olsen G, Olson R, Osterman A, Portnoy V, Pusch GD, Rodionov DA, Rückert C, Steiner J, Stevens R, Thiele I, Vassieva O, Ye Y, Zagnitko O, Vonstein V (2005)PUB | PDF | DOI | WoS | PubMed | Europe PMC
The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes.
Nucleic Acids Research 33(17): 5691-5702. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317Tauch A, Kaiser O, Hain T, Goesmann A, Weisshaar B, Albersmeier A, Bekel T, Bischoff N, Brune I, Chakraborty T, Kalinowski J, Meyer F, Rupp O, Schneiker-Bekel S, Viehöver P, Pühler A (2005)PUB | DOI | WoS | PubMed | Europe PMC | GenBank
Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora.
Journal of Bacteriology 187(13): 4671-4682. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773644Goesmann A, Linke B, Bartels D, Dondrup M, Krause L, Neuweger H, Oehm S, Paczian T, Wilke A, Meyer F (2005)PUB | PDF | DOI | WoS | PubMed | Europe PMC
BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser.
Nucleic Acids Research 33(Web Server): W710-W716. -
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608756Westberg J, Persson A, Holmberg A, Goesmann A, Lundeberg J, Johansson KE, Pettersson B, Uhlen M (2004)PUB | DOI | WoS | PubMed | Europe PMC
The genome sequence of Mycoplasma mycoides subsp mycoides SC type strain PG1(T), the causative agent of contagious bovine pleuropneumonia (CBPP).
GENOME RESEARCH 14(2): 221-227. -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608953Rendulic S, Jagtap P, Rosinus A, Eppinger M, Baar C, Lanz C, Keller H, Lambert C, Evans KJ, Goesmann A, Meyer F, Sockett RE, Schuster SC (2004)PUB | DOI | WoS | PubMed | Europe PMC
A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective.
SCIENCE 303(5658): 689-692. -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1605656Szczepanowski R, Krahn I, Linke B, Goesmann A, Pühler A, Schlüter A (2004)PUB | DOI | WoS | PubMed | Europe PMC | GenBank
Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport system.
Microbiology 150(11): 3613-3630. -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607424McHardy AC, Goesmann A, Pühler A, Meyer F (2004)PUB | DOI | WoS | PubMed | Europe PMC
Development of joint application strategies for two microbial gene finders.
BIOINFORMATICS 20(10): 1622-1631. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609260Dondrup M, Goesmann A, Bartels D, Kalinowski J, Krause L, Linke B, Rupp O, Sczyrba A, Pühler A, Meyer F (2003)PUB | DOI | WoS | PubMed | Europe PMC
EMMA: a platform for consistent storage and efficient analysis of microarray data.
JOURNAL OF BIOTECHNOLOGY 106(2-3): 135-146. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609286Goesmann A, Linke B, Rupp O, Krause L, Bartels D, Dondrup M, McHardy AC, Wilke A, Pühler A, Meyer F (2003)PUB | DOI | WoS | PubMed | Europe PMC
Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology.
JOURNAL OF BIOTECHNOLOGY 106(2-3): 157-167. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609251Kaiser O, Bartels D, Bekel T, Goesmann A, Kespohl S, Pühler A, Meyer F (2003)PUB | DOI | WoS | PubMed | Europe PMC
Whole genome shotgun sequencing guided-by bioinformatics pipelines - An optimized approach for an established technique.
JOURNAL OF BIOTECHNOLOGY 106(2-3): 121-133. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609272Wilke A, Rückert C, Bartels D, Dondrup M, Goesmann A, Hüser AT, Kespohl S, Linke B, Mahne M, McHardy A, Pühler A, Meyer F (2003)PUB | DOI | WoS | PubMed | Europe PMC
Bioinformatics support for high-throughput proteomics.
JOURNAL OF BIOTECHNOLOGY 106(2-3): 147-156. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612324Tauch A, Schlüter A, Bischoff N, Goesmann A, Meyer F, Pühler A (2003)PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
The 79,370-bp conjugative plasmid pB4 consists of an IncP-1 beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite antibiotic efflux system of the resistance-nodulation-division family.
Molecular Genetics and Genomics 268(5): 570-584. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Pühler A (2003)PUB | PDF | DOI | WoS | PubMed | Europe PMC
GenDB - an open source genome annotation system for prokaryote genomes.
Nucleic Acids Research 31(8): 2187-2195. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1895035Kalinowski J, Bathe B, Bartels D, Bischoff N, Bott M, Burkovski A, Dusch N, Eggeling L, Eikmanns BJ, Gaigalat L, Goesmann A, Hartmann M, Huthmacher K, Kramer R, Linke B, McHardy AC, Meyer F, Mockel B, Pfefferle W, Pühler A, Rey DA, Rückert C, Rupp O, Sahm H, Wendisch VF, Wiegrabe I, Tauch A (2003)PUB | DOI | WoS | PubMed | Europe PMC | GenBank
The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins.
Journal of Biotechnology 104(1-3): 5-25. -
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615366Goesmann A, Haubrock M, Meyer F, Kalinowski J, Giegerich R (2002)PUB | DOI | WoS | PubMed | Europe PMC
PathFinder: reconstruction and dynamic visualization of metabolic pathways.
BIOINFORMATICS 18(1): 124-129.