457 Publikationen

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  • [457]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2986496
    Helm, T.; Stausberg, T.; Previati, M.; Ernst, P.; Klein, B.; Busche, T.; Kalinowski, J.; Wibberg, D.; Wiechert, W.; Claerhout, L.; Wierckx, N.; Noack, S. (2024): Itaconate Production from Crude Substrates with U. maydis: Scale-up of an Industrially Relevant Bioprocess Microbial Cell Factories,23:(1):29
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [456]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2986096
    Hamed, M. B.; Busche, T.; Simoens, K.; Carpentier, S.; Kormanec, J.; Van Mellaert, L.; Anné, J.; Kalinowski, J.; Bernaerts, K.; Karamanou, S.; Economou, A. (2024): Enhanced protein secretion in reduced genome strains of Streptomyces lividans Microbial Cell Factories ,23:(1):13
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  • [455]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2986093
    Yushchuk, O.; Binda, E.; Rückert-Reed, C.; Berini, F.; Fedorenko, V.; Kalinowski, J.; Marinelli, F. (2024): Actinoplanes oblitus sp. nov., producing the glycopeptide antibiotic A477 International Journal of Systematic and Evolutionary Microbiology,74:(1)
    PUB | DOI | PubMed | Europe PMC
     
  • [454]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2985929
    Cedeno-Sanchez, M.; Cheng, T.; Lambert, C.; Kolarík, M.; Kuhnert, E.; Cox, R. J.; Kalinowski, J.; Verwaaijen, B.; Stadler, M. (2024): Unraveling intragenomic polymorphisms in the high-quality genome of Hypoxylaceae: a comprehensive study of the rDNA cistron Mycological Progress,23:(1):5
    PUB | DOI | WoS
     
  • [453]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2979424 OA
    Schmidt, P.; Brandt, D.; Busche, T.; Kalinowski, J. (2023): Characterization of Bacterial Transcriptional Regulatory Networks in Escherichia coli through Genome-Wide In Vitro Run-Off Transcription/RNA-seq (ROSE) Microorganisms,11:(6):1388
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
     
  • [452]
    2023 | Preprint | Veröffentlicht | PUB-ID: 2987224
    Hain, C.; Stadler, R.; Kalinowski, J. (2023): Long-read sequencing shows complex structural variants in tumor-stage mycosis fungoides bioRxiv
    PUB | DOI | Preprint
     
  • [451]
    2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2985593
    Stegmüller, J.; Rodriguez Estevez, M.; Shu, W.; Gläser, L.; Myronovskyi, M.; Rückert-Reed, C.; Kalinowski, J.; Luzhetskyy, A.; Wittmann, C. (2023): Systems metabolic engineering of the primary and secondary metabolism of Streptomyces albidoflavus enhances production of the reverse antibiotic nybomycin against multi-resistant Staphylococcus aureus Metabolic Engineering,81
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [450]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2986284
    Sun, Y.; Gerke, J.; Becker, K.; Kuhnert, E.; Verwaaijen, B.; Wibberg, D.; Kalinowski, J.; Stadler, M.; Cox, R. J. (2023): Rapid discovery of terpene tailoring enzymes for total biosynthesis Chemical Science,14:(46): 13463-13467.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [449]
    2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2985583
    Breuer, J.; Busche, T.; Kalinowski, J.; Nowrousian, M. (2023): Histone binding of ASF1 is required for fruiting body development but not for genome stability in the filamentous fungus Sordaria macrospora mBio,e0289623
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  • [448]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2978776 OA
    Nölting, S.; März, C.; Jacob, L.; Persicke, M.; Schneiker-Bekel, S.; Kalinowski, J. (2023): The 4-alpha-Glucanotransferase AcbQ Is Involved in Acarbose Modification in Actinoplanes sp. SE50/110 Microorganisms,11:(4):848
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [447]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2977932 OA
    Kann, S.; Concha, G.; Weinreich, F.; Hahn, A.; Rückert, C.; Kalinowski, J.; Landt, O.; Frickmann, H. (2023): Comparative Assessment of Two Commercial Real-Time PCR Assays for the Diagnosis of Trypanosoma cruzi DNA in Serum Microorganisms,11:(4):901
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [446]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2985907
    Seo, K.; Shu, W.; Rückert-Reed, C.; Gerlinger, P.; Erb, T. J.; Kalinowski, J.; Wittmann, C. (2023): From waste to health-supporting molecules: biosynthesis of natural products from lignin-, plastic- and seaweed-based monomers using metabolically engineered <i>Streptomyces lividans</i> Microbial Cell Factories ,22:(1):262
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [445]
    2023 | Preprint | Veröffentlicht | PUB-ID: 2985153
    Peng, F.; Giacomelli, G.; Meyer, F.; Linder, M.; Haak, M.; Rückert-Reed, C.; Weiß, M.; Kalinowski, J.; Bramkamp, M. (2023): Deletion of SMC renders FtsK essential in bioRxiv
    PUB | DOI
     
  • [444]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2984921
    Van Loi, V.; Busche, T.; Kuropka, B.; Müller, S.; Methling, K.; Lalk, M.; Kalinowski, J.; Antelmann, H. (2023): Staphylococcus aureus adapts to the immunometabolite itaconic acid by inducing acid and oxidative stress responses including S-bacillithiolations and S-itaconations Free Radical Biology and Medicine,208: 859-876.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [443]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2984747
    Eckert, N.; Rebets, Y.; Horbal, L.; Zapp, J.; Herrmann, J.; Busche, T.; Müller, R.; Kalinowski, J.; Luzhetskyy, A. (2023): Discovery and overproduction of novel highly bioactive pamamycins through transcriptional engineering of the biosynthetic gene cluster Microbial Cell Factories ,22:(1):233
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  • [442]
    2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2984306
    Loi, V. V.; Busche, T.; Schnaufer, F.; Kalinowski, J.; Antelmann, H. (2023): The neutrophil oxidant hypothiocyanous acid causes a thiol-specific stress response and an oxidative shift of the bacillithiol redox potential in Staphylococcus aureus Microbiology Spectrum ,e0325223
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [441]
    2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2982191
    Stanelle-Bertram, S.; Beck, S.; Mounogou, N. K.; Schaumburg, B.; Stoll, F.; Al Jawazneh, A.; Schmal, Z.; Bai, T.; Zickler, M.; Beythien, G.; Becker, K.; de la Roi, M.; Heinrich, F.; Schulz, C.; Sauter, M.; Krasemann, S.; Lange, P.; Heinemann, A.; van Riel, D.; Leijten, L.; Bauer, L.; van den Bosch, T. P. P.; Lopuhaä, B.; Busche, T.; Wibberg, D.; Schaudien, D.; Goldmann, T.; Lüttjohann, A.; Ruschinski, J.; Jania, H.; Müller, Z.; Pinho Dos Reis, V.; Krupp-Buzimkic, V.; Wolff, M.; Fallerini, C.; Baldassarri, M.; Furini, S.; Norwood, K.; Käufer, C.; Schützenmeister, N.; von Köckritz-Blickwede, M.; Schroeder, M.; Jarczak, D.; Nierhaus, A.; Welte, T.; Kluge, S.; McHardy, A. C.; Sommer, F.; Kalinowski, J.; Krauss-Etschmann, S.; Richter, F.; von der Thüsen, J.; Baumgärtner, W.; Klingel, K.; Ondruschka, B.; Renieri, A.; Gabriel, G. (2023): CYP19A1 mediates severe SARS-CoV-2 disease outcome in males Cell Reports Medicine ,101152
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  • [440]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2984307
    Beganovic, S.; Rückert-Reed, C.; Sucipto, H.; Shu, W.; Gläser, L.; Patschkowski, T.; Struck, B.; Kalinowski, J.; Luzhetskyy, A.; Wittmann, C. (2023): Systems biology of industrial oxytetracycline production in Streptomyces rimosus: the secrets of a mutagenized hyperproducer Microbial Cell Factories ,22:(1):222
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  • [439]
    2023 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2984072
    Cieslak, C.; Rückert-Reed, C.; Busche, T.; Hain, C.; Kalinowski, J.; Schaper-Gerhardt, K.; Gutzmer, R.; Stadler, R. (2023): T-cell receptor clonality analyses using nanopore sequencing for cutaneous T-cell lymphoma. In: The Abstract from The EORTC Cutaneous Lymphoma Tumour Group Annual Meeting. Oxford: Elsevier . (European Journal of Cancer, 190).
    PUB | DOI | WoS
     
  • [438]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2983200
    Savin, M.; Hammerl, J. A.; Hassa, J.; Hembach, N.; Kalinowski, J.; Schwartz, T.; Droop, F.; Mutters, N. T. (2023): Free-floating extracellular DNA (exDNA) in different wastewaters: Status quo on exDNA-associated antimicrobial resistance genes Environmental Pollution,337:122560
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  • [437]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2980373 OA
    Sagurna, L.; Heinrich, S.; Kaufmann, L. - S.; Rückert-Reed, C.; Busche, T.; Wolf, A.; Eickhoff, J.; Klebl, B.; Kalinowski, J.; Bandow, J. E. (2023): Characterization of the Antibacterial Activity of Quinone-Based Compounds Originating from the Alnumycin Biosynthetic Gene Cluster of a Streptomyces Isolate Antibiotics,12:(7):1116
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  • [436]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2980686 OA
    Werner, F.; Schwardmann, L.; Siebert, D.; Rückert-Reed, C.; Kalinowski, J.; Wirth, M. - T.; Hofer, K.; Takors, R.; Wendisch, V. F.; Blombach, B. (2023): Metabolic engineering of Corynebacterium glutamicum for fatty alcohol production from glucose and wheat straw hydrolysate Biotechnology for Biofuels and Bioproducts,16:116
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  • [435]
    2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2981183
    Bitzenhofer, N. L.; Höfel, C.; Thies, S.; Weiler, A. J.; Eberlein, C.; Heipieper, H. J.; Batra-Safferling, R.; Sundermeyer, P.; Heidler, T.; Sachse, C.; Busche, T.; Kalinowski, J.; Belthle, T.; Drepper, T.; Jaeger, K. - E.; Loeschcke, A. (2023): Exploring engineered vesiculation by Pseudomonas putida KT2440 for natural product biosynthesis Microbial Biotechnology
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [434]
    2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2978071
    Siebert, D.; Busche, T.; Saydam, E.; Kalinowski, J.; Rückert-Reed, C.; Blombach, B. (2023): Complete Genome Sequence of the Carboxydotrophic Knallgas Bacterium Pseudomonas carboxydohydrogena Strain DSM 1083 Microbiology Resource Announcements
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [433]
    2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2967760
    Pheiffer, F.; Schneider, Y. K. - H.; Hansen, E. H.; Andersen, J. H.; Isaksson, J.; Busche, T.; Rückert, C.; Kalinowski, J.; Zyl, L. van; Trindade, M. (2023): Bioassay-Guided Fractionation Leads to the Detection of Cholic Acid Generated by the Rare Thalassomonas sp. Marine Drugs,21:(1):2
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  • [432]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2968186 OA
    Shao, S.; Scholtz, L. - U.; Gendreizig, S.; Martínez-Ruiz, L.; Florido, J.; Escames, G.; Schürmann, M.; Hain, C.; Hose, L.; Mentz, A.; Schmidt, P.; Wang, M.; Goon, P.; Wehmeier, M.; Brasch, F.; Kalinowski, J.; Oppel, F.; Sudhoff, H. (2023): Primary head and neck cancer cell cultures are susceptible to proliferation of Epstein-Barr virus infected lymphocytes BMC Cancer,23:(1):47
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  • [431]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2963726 OA
    Maraci, Ö.; Antonatou-Papaioannou, A.; Jünemann, S.; Engel, K.; Castillo-Gutiérrez, O.; Busche, T.; Kalinowski, J.; Caspers, B. (2022): Timing matters: Age-dependent impacts of the social environment and host selection on the avian gut microbiota Microbiome,10:(1): 202.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
     
  • [430]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965769 OA
    Hain, C.; Stadler, R.; Kalinowski, J. (2022): Unraveling the Structural Variations of Early-Stage Mycosis Fungoides—CD3 Based Purification and Third Generation Sequencing as Novel Tools for the Genomic Landscape in CTCL Cancers,14:(18):4466
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [429]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2959607
    Hain, C.; Stadler, R.; Kalinowski, J. (2022): Sezary syndrome shows whole genome duplication as a late event in tumor evolution The Journal of investigative dermatology,142:(6): 1755-1758.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [428]
    2022 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2967517 OA
    Fritsch, V. N.; Linzner, N.; Busche, T.; Said, N.; Weise, C.; Kalinowski, J.; Wahl, M. C.; Antelmann, H. (2022): The MerR-family regulator NmlR is involved in the defense against oxidative stress in Streptococcus pneumoniae Molecular Microbiology
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [427]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966253 OA
    Shi, Y. - M.; Crames, J. J.; Czech, L.; Bozhuyuk, K. A. J.; Shi, Y. - N.; Hirschmann, M.; Lamberth, S.; Claus, P.; Paczia, N.; Rückert-Reed, C.; Kalinowski, J.; Bange, G.; Bode, H. B. (2022): Genome Mining Enabled by Biosynthetic Characterization Uncovers a Class of Benzoxazolinate-Containing Natural Products in Diverse Bacteria Angewandte Chemie International Edition,134:(51)
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  • [426]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2969696 OA
    Busche, T.; Dostalova, H.; Rucka, L.; Holatko, J.; Barvik, I.; Stepanek, V.; Patek, M.; Kalinowski, J. (2022): Overlapping SigH and SigE sigma factor regulons in Corynebacterium glutamicum Frontiers in Microbiology ,13:1059649
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  • [425]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2968933
    Berckx, F.; Bandong, C. M.; Wibberg, D.; Kalinowski, J.; Willemse, J.; Brachmann, A.; Simbahan, J.; Pawlowski, K. (2022): Streptomyces coriariae sp. nov., a novel streptomycete isolated from actinorhizal nodules of Coriaria intermedia International Journal of Systematic and Evolutionary Microbiology,72:(12)
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  • [424]
    2022 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2965718
    Oppel, F.; Shao, S.; Gendreizig, S.; Kühnel, P.; Przybycin, V.; Hain, C.; Schmidt, P.; Schürmann, M.; Goon, P.; Niehaus, K.; Kalinowski, J.; Sudhoff, H. (2022): Head and neck cancer cells can differentiate and resemble their tissue of origin. In: Proceedings: AACR Annual Meeting 2022; April 8-13, 2022; New Orleans, LA. American Association for Cancer Research (AACR). (Cancer Research, 82). S. 111-111.
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  • [423]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2967684 OA
    Behle, A.; Dietsch, M.; Goldschmidt, L.; Murugathas, W.; Berwanger, L. C.; Burmester, J.; Yao, L.; Brandt, D.; Busche, T.; Kalinowski, J.; Hudson, E. P.; Ebenhöh, O.; Axmann, I. M.; Machné, R. (2022): Manipulation of topoisomerase expression inhibits cell division but not growth and reveals a distinctive promoter structure in Nucleic Acids Research,gkac1132
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  • [422]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966624 OA
    Hertel, O.; Neuss, A.; Busche, T.; Brandt, D.; Kalinowski, J.; Bahnemann, J.; Noll, T. (2022): Enhancing stability of recombinant CHO cells by CRISPR/Cas9-mediated site-specific integration into regions with distinct histone modifications Frontiers in Bioengineering and Biotechnology,10
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  • [421]
    2022 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2967817
    Oppel, F.; Gendreizig, S.; Kühnel, P.; Martínez-Ruiz, L.; Shao, S.; Schmidt, P.; Hain, C.; Schürmann, M.; Hose, L.; Pabla, H.; Loganathan, L.; Viyof Ful, F.; Przybycin, V.; Scholtz, L. - U.; Brasch, F.; Busche, T.; Goon, P.; Escames, G.; Niehaus, K.; Kalinowski, J.; Sudhoff, H. (2022): P28 Head and neck cancer cells differentiate resembling their tissue of origin. In: Amsterdam University Medical Centers (Hrsg.): Abstracts of the 4th International Symposium on HPV Infection in Head and Neck Cancer Latest Advances in Biomarker-driven Management. Elsevier . (Oral Oncology, 134).
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  • [420]
    2022 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2967393
    Tseduliak, V. - M.; Dolia, B.; Ostash, I.; Lopatniuk, M.; Busche, T.; Ochi, K.; Kalinowski, J.; Luzhetskyy, A.; Fedorenko, V.; Ostash, B. (2022): Mutations within gene XNR_2147 for TetR-like protein enhance lincomycin resistance and endogenous specialized metabolism of Streptomyces albus J1074 Journal of Applied Genetics
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  • [419]
    2022 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2966971
    Hain, C.; Cieslak, C.; Stadler, R.; Kalinowski, J. (2022): Structural variations in low tumor fraction mycosis fungoides unraveled by nanopore sequencing European Journal of Cancer,173:(Suppl. 1): S31.
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  • [418]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966361
    Lale, R.; Tietze, L.; Fages-Lartaud, M.; Nesje, J.; Onsager, I.; Engelhardt, K.; Wong, C. F. A.; Akan, M.; Hummel, N.; Kalinowski, J.; Rückert, C.; Hohmann-Marriott, M. F. (2022): A universal approach to gene expression engineering Synthetic Biology ,7:(1):ysac017
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  • [417]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966354
    Riese, C. N.; Wittchen, M.; Jerome, V.; Freitag, R.; Busche, T.; Kalinowski, J.; Schueler, D. (2022): The transcriptomic landscape of Magnetospirillum gryphiswaldense during magnetosome biomineralization BMC Genomics ,23:(1):699
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  • [416]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965159 OA
    Schafhauser, T.; Wibberg, D.; Binder, A.; Rückert, C.; Busche, T.; Wohlleben, W.; Kalinowski, J. (2022): Genome Assembly and Genetic Traits of the Pleuromutilin-Producer Clitopilus passeckerianus DSM1602 Journal of Fungi,8:(8):862
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  • [415]
    2022 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2965777
    Cieslak, C.; Hain, C.; Rückert, C.; Klages, L. J.; Schaper-Ger-Hardt, K.; Kalinowski, J.; Gutzmer, R. (2022): Entwicklung eines Protokolls für die Bestimmung der T-Zell-Rezeptor-Klonalität auf Basis der Nanopore-DNA-Sequenzierung. In: Special Issue:Abstractband anlässlich des, 32. Deutschen Hautkrebskongresses (ADO-Jahrestagung), 14.–17. September 2022. Hoboken: Wiley. (Journal der Deutschen Dermatologischen Gesellschaft, 20). S. 102.
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  • [414]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965454
    Berckx, F.; Nguyen, T. V.; Bandong, C. M.; Lin, H. - H.; Yamanaka, T.; Katayama, S.; Wibberg, D.; Blom, J.; Kalinowski, J.; Tateno, M.; Simbahan, J.; Liu, C. - T.; Brachmann, A.; Pawlowski, K. (2022): A tale of two lineages: how the strains of the earliest divergent symbiotic Frankia clade spread over the world BMC Genomics ,23:(1):602
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  • [413]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964659
    Handel, F.; Kulik, A.; Wex, K. W.; Berscheid, A.; Saur, J. S.; Winkler, A.; Wibberg, D.; Kalinowski, J.; Broetz-Oesterhelt, H.; Mast, Y. (2022): psi-Footprinting approach for the identification of protein synthesis inhibitor producers NAR: Genomics and Bioinformatics ,4:(3):lqac055
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  • [412]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2961676 OA
    Ullmann, L.; Wibberg, D.; Busche, T.; Rückert, C.; Müsgens, A.; Kalinowski, J.; Blank, L. M. (2022): Seventeen Ustilaginaceae High-Quality Genome Sequences Allow Phylogenomic Analysis and Provide Insights into Secondary Metabolite Synthesis Journal of Fungi,8:(3):269
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  • [411]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2961099 OA
    Klaus, T.; Ninck, S.; Albersmeier, A.; Busche, T.; Wibberg, D.; Jiang, J.; Elcheninov, A. G.; Zayulina, K. S.; Kaschani, F.; Braesen, C.; Overkleeft, H. S.; Kalinowski, J.; Kublanov, I. V.; Kaiser, M.; Siebers, B. (2022): Activity-Based Protein Profiling for the Identification of Novel Carbohydrate-Active Enzymes Involved in Xylan Degradation in the Hyperthermophilic Euryarchaeon Thermococcus sp. Strain 2319x1E Frontiers in Microbiology ,12:734039
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  • [410]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952449 OA
    Witte, K. E.; Hertel, O.; Windmöller, B. A.; Helweg, L.; Höving, A. L.; Knabbe, C.; Busche, T.; Greiner, J.; Kalinowski, J.; Noll, T.; Mertzlufft, F.; Beshay, M.; Pfitzenmaier, J.; Kaltschmidt, B.; Kaltschmidt, C.; Banz-Jansen, C.; Simonis, M. (2021): Nanopore Sequencing Reveals Global Transcriptome Signatures of Mitochondrial and Ribosomal Gene Expressions in Various Human Cancer Stem-like Cell Populations Cancers,13:(5):1136
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  • [409]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952704 OA
    Berger, C.; Rückert, C.; Blom, J.; Rabaey, K.; Kalinowski, J.; Rosenbaum, M. A. (2021): Estimation of pathogenic potential of an environmental Pseudomonas aeruginosa isolate using comparative genomics Scientific Reports,11:(1):1370
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  • [408]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2954736 OA
    Keysberg, C.; Hertel, O.; Schelletter, L.; Busche, T.; Sochart, C.; Kalinowski, J.; Hoffrogge, R.; Otte, K.; Noll, T. (2021): Exploring the molecular content of CHO exosomes during bioprocessing Applied Microbiology and Biotechnology,105:(9): 3673-3689.
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  • [407]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950292 OA
    Blifernez-Klassen, O.; Klassen, V.; Wibberg, D.; Cebeci, E.; Henke, C.; Rückert, C.; Chaudhari, S.; Rupp, O.; Blom, J.; Winkler, A.; Al-Dilaimi, A.; Goesmann, A.; Sczyrba, A.; Kalinowski, J.; Bräutigam, A.; Kruse, O. (2021): Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortia Scientific Reports,11:(1):1726
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
     
  • [406]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2954272 OA
    Droste, J.; Rückert, C.; Kalinowski, J.; Hamed, M. B.; Anné, J.; Simoens, K.; Bernaerts, K.; Economou, A.; Busche, T. (2021): Extensive Reannotation of the Genome of the Model Streptomycete Streptomyces lividans TK24 Based on Transcriptome and Proteome Information Frontiers in Microbiology,12:604034
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [405]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950415 OA
    Zanini, S.; Secic, E.; Busche, T.; Galli, M.; Zheng, Y.; Kalinowski, J.; Kogel, K. - H. (2021): Comparative Analysis of Transcriptome and sRNAs Expression Patterns in the Brachypodium distachyon- Magnaporthe oryzae Pathosystems. International journal of molecular sciences,22:(2):650
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [404]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956428 OA
    Mingyar, E.; Muhling, L.; Kulik, A.; Winkler, A.; Wibberg, D.; Kalinowski, J.; Blin, K.; Weber, T.; Wohlleben, W.; Stegmann, E. (2021): A Regulator Based "Semi-Targeted" Approach to Activate Silent Biosynthetic Gene Clusters International journal of molecular sciences,22:(14):7567
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [403]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957501 OA
    Brandt, D.; Simunovic, M.; Busche, T.; Haak, M.; Belmann, P.; Jünemann, S.; Schulz, T.; Klages, L. J.; Vinke, S.; Beckstette, M.; Pohl, E.; Scherer, C.; Sczyrba, A.; Kalinowski, J. (2021): Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines Viruses,13:(9):1870
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [402]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2960297 OA
    Linder, M.; Haak, M.; Botes , A.; Kalinowski, J.; Rückert, C. (2021): Construction of an IS-Free Corynebacterium glutamicum ATCC 13 032 Chassis Strain and Random Mutagenesis Using the Endogenous ISCg1 Transposase Frontiers in Bioengineering and Biotechnology,9:751334
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [401]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2958416 OA
    Luttermann, T.; Rückert, C.; Wibberg, D.; Busche, T.; Schwarzhans, J. - P.; Friehs, K.; Kalinowski, J. (2021): Establishment of a near-contiguous genome sequence of the citric acid producing yeast DSM 3286 with resolution of rDNA clusters and telomeres NAR Genomics and Bioinformatics,3:(4): 13.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [400]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2959606
    Creutz, I.; Busche, T.; Layer, F.; Bednarz, H.; Kalinowski, J.; Niehaus, K. (2021): Evaluation of virulence potential of methicillin-sensitive and methicillin-resistant Staphylococcus aureus isolates from a German refugee cohort Travel medicine and infectious disease,102204
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [399]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955527
    Hrab, P.; Rückert, C.; Busche, T.; Ostash, I.; Kalinowski, J.; Fedorenko, V.; Yushchuk, O.; Ostash, B. (2021): Complete genome sequence of Streptomyces cyanogenus S136, producer of anticancer angucycline landomycin A 3 Biotech,11:(6):282
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [398]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2958743
    Van Loi, V.; Busche, T.; Fritsch, V. N.; Weise, C.; Gruhlke, M. C. H.; Slusarenko, A. J.; Kalinowski, J.; Antelmann, H. (2021): The two-Cys-type TetR repressor GbaA confers resistance under disulfide and electrophile stress in Staphylococcus aureus Free Radical Biology and Medicine,177: 120-131.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [397]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2959487
    Dziuba, M.; Riese, C. N.; Borgert, L.; Wittchen, M.; Busche, T.; Kalinowski, J.; Uebe, R.; Schueler, D. (2021): The Complex Transcriptional Landscape of Magnetosome Gene Clusters in Magnetospirillum gryphiswaldense mSystems,6:(5):e00893-21
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [396]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2958745 OA
    Brodehl, A.; Hain, C.; Flottmann, F.; Ratnavadivel, S.; Gaertner, A.; Klauke, B.; Kalinowski, J.; Korperich, H.; Gummert, J.; Paluszkiewicz, L.; Deutsch, M. - A.; Milting, H. (2021): The Desmin Mutation DES-c.735G>C Causes Severe Restrictive Cardiomyopathy by Inducing In-Frame Skipping of Exon-3 Biomedicines,9:(10):1400
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [395]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2958734
    Patenge, N.; Rückert, C.; Bull, J.; Strey, K.; Kalinowski, J.; Kreikemeyer, B. (2021): Whole-Genome Sequence of Streptococcus pyogenes Strain 591, Belonging to the Genotype emm49 Microbiology Resource Announcements,10:(43):e0081621
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [394]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2957511
    Novakova, R.; Rückert, C.; Knirschova, R.; Feckova, L.; Busche, T.; Csolleiova, D.; Homerova, D.; Rezuchova, B.; Javorova, R.; Sevcikova, B.; Kalinowski, J.; Kormanec, J. (2021): The linear plasmid pSA3239 is essential for the replication of the Streptomyces lavendulae subsp. lavendulae CCM 3239 chromosome. Research in microbiology,103870
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [393]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957898
    Fulde, M.; van Vorst, K.; Zhang, K.; Westermann, A. J.; Busche, T.; Huei, Y. C.; Welitschanski, K.; Froh, I.; Pagelow, D.; Plendl, J.; Pfarrer, C.; Kalinowski, J.; Vogel, J.; Valentin-Weigand, P.; Hensel, M.; Tedin, K.; Repnik, U.; Hornef, M. W. (2021): SPI2 T3SS effectors facilitate enterocyte apical to basolateral transmigration of Salmonella-containing vacuoles in vivo Gut microbes,13:(1):1973836
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [392]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955515
    Scales, B. S.; Cable, R. N.; Duhaime, M. B.; Gerdts, G.; Fischer, F.; Fischer, D.; Mothes, S.; Hintzki, L.; Moldaenke, L.; Ruwe, M.; Kalinowski, J.; Kreikemeyer, B.; Pedrotti, M. - L.; Gorsky, G.; Elineau, A.; Labrenz, M.; Oberbeckmann, S. (2021): Cross-Hemisphere Study Reveals Geographically Ubiquitous, Plastic-Specific Bacteria Emerging from the Rare and Unexplored Biosphere mSphere,6:(3): e00851-20
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [391]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956157
    Sekurova, O. N.; Sun, Y. - Q.; Zehl, M.; Rückert, C.; Stich, A.; Busche, T.; Kalinowski, J.; Zotchev, S. B. (2021): Coupling of the engineered DNA "mutator" to a biosensor as a new paradigm for activation of silent biosynthetic gene clusters in Streptomyces Nucleic acids research,gkab583
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [390]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957358
    Lichtenstein, D.; Mentz, A.; Sprenger, H.; Schmidt, F. F.; Albaum, S.; Kalinowski, J.; Planatscher, H.; Joos, T. O.; Poetz, O.; Braeuning, A. (2021): A targeted transcriptomics approach for the determination of mixture effects of pesticides Toxicology,460:152892
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [389]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957237
    Secic, E.; Zanini, S.; Wibberg, D.; Jelonek, L.; Busche, T.; Kalinowski, J.; Nasfi, S.; Thielmann, J.; Imani, J.; Steinbrenner, J.; Kogel, K. - H. (2021): A novel plant-fungal association reveals fundamental sRNA and gene expression reprogramming at the onset of symbiosis BMC Biology,19:(1): 171
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [388]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957069
    Schmidt, F. F.; Lichtenstein, D.; Planatscher, H.; Mentz, A.; Kalinowski, J.; Steinhilber, A. E.; Joos, T. O.; Braeuning, A.; Poetz, O. (2021): Pesticide mixture effects on liver protein abundance in HepaRG cells Toxicology ,458:152839
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [387]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957077
    Lichtenstein, D.; Lasch, A.; Alarcan, J.; Mentz, A.; Kalinowski, J.; Schmidt, F. F.; Poetz, O.; Marx-Stoelting, P.; Braeuning, A. (2021): An eight-compound mixture but not corresponding concentrations of individual chemicals induces triglyceride accumulation in human liver cells Toxicology,459:152857
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [386]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956918 OA
    Faßhauer, P.; Busche, T.; Kalinowski, J.; Mäder, U.; Poehlein, A.; Daniel, R.; Stülke, J. (2021): Functional Redundancy and Specialization of the Conserved Cold Shock Proteins in Bacillus subtilis Microorganisms,9:(7):1434
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [385]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2951544
    Yushchuk, O.; Ostash, I.; Mosker, E.; Vlasiuk, I.; Deneka, M.; Rückert, C.; Busche, T.; Fedorenko, V.; Kalinowski, J.; Sussmuth, R. D.; Ostash, B. (2021): Eliciting the silent lucensomycin biosynthetic pathway in Streptomyces cyanogenus S136 via manipulation of the global regulatory gene adpA Scientific reports,11:(1):3507
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [384]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2955512
    Aevarsson, A.; Kaczorowska, A. - K.; Adalsteinsson, B. T.; Ahlqvist, J.; Al-Karadaghi, S.; Altenbuchner, J.; Arsin, H.; Atlasson, U. A.; Brandt, D.; Cichowicz-Cieslak, M.; Cornish, K. A. S.; Courtin, J.; Dabrowski, S.; Dahle, H.; Djeffane, S.; Dorawa, S.; Dusaucy, J.; Enault, F.; Fedoy, A. - E.; Freitag-Pohl, S.; Fridjonsson, O. H.; Galiez, C.; Glomsaker, E.; Guerin, M.; Gundeso, S. E.; Gudmundsdottir, E. E.; Gudmundsson, H.; Hakansson, M.; Henke, C.; Helleux, A.; Henriksen, J. R.; Hjorleifdottir, S.; Hreggvidsson, G. O.; Jasilionis, A.; Jochheim, A.; Jonsdottir, I.; Jonsdottir, L. B.; Jurczak-Kurek, A.; Kaczorowski, T.; Kalinowski, J.; Kozlowski, L. P.; Krupovic, M.; Kwiatkowska-Semrau, K.; Lanes, O.; Lange, J.; Lebrat, J.; Linares-Pasten, J.; Liu, Y.; Lorentsen, S. A.; Luttermann, T.; Mas, T.; Merre, W.; Mirdita, M.; Morzywolek, A.; Ndela, E. O.; Karlsson, E. N.; Olgudottir, E.; Pedersen, C.; Perler, F.; Petursdottir, S. K.; Plotka, M.; Pohl, E.; Prangishvili, D.; Ray, J. L.; Reynisson, B.; Robertsdottir, T.; Sandaa, R. - A.; Sczyrba, A.; Skirnisdottir, S.; Soding, J.; Solstad, T.; Steen, I. H.; Stefansson, S. K.; Steinegger, M.; Overa, K. S.; Striberny, B.; Svensson, A.; Szadkowska, M.; Tarrant, E. J.; Terzian, P.; Tourigny, M.; van den Bergh, T.; Vanhalst, J.; Vincent, J.; Vroling, B.; Walse, B.; Wang, L.; Watzlawick, H.; Welin, M.; Werbowy, O.; Wons, E.; Zhang, R. (2021): Going to extremes - a metagenomic journey into the dark matter of life FEMS microbiology letters,fnab067
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [383]
    2021 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2956159
    Medvedeva, S.; Brandt, D.; Cvirkaite-Krupovic, V.; Liu, Y.; Severinov, K.; Ishino, S.; Ishino, Y.; Prangishvili, D.; Kalinowski, J.; Krupovic, M. (Accepted): New insights into the diversity and evolution of the archaeal mobilome from three complete genomes of Saccharolobus shibatae Environmental microbiology
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [382]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955919
    Schmitz, L. M.; Hageneier, F.; Rosenthal, K.; Busche, T.; Brandt, D.; Kalinowski, J.; Lutz, S. (2021): Recombinant expression and characterization of novel P450s from Actinosynnema mirum Bioorganic & medicinal chemistry,42:116241
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [381]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955521
    Glaser, L.; Kuhl, M.; Stegmuller, J.; Rückert, C.; Myronovskyi, M.; Kalinowski, J.; Luzhetskyy, A.; Wittmann, C. (2021): Superior production of heavy pamamycin derivatives using a bkdR deletion mutant of Streptomyces albus J1074/R2. Microbial cell factories,20:(1):111
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [380]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955526
    Lick, S.; Wibberg, D.; Winkler, A.; Blom, J.; Grimmler, C.; Goesmann, A.; Kalinowski, J.; Krockel, L. (2021): Pseudomonas paraversuta sp. nov. isolated from refrigerated dry-aged beef. International journal of systematic and evolutionary microbiology,71:(6)
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [379]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2954380
    Yushchuk, O.; Vior, N. M.; Andreo-Vidal, A.; Berini, F.; Rückert, C.; Busche, T.; Binda, E.; Kalinowski, J.; Truman, A. W.; Marinelli, F. (2021): Genomic-Led Discovery of a Novel Glycopeptide Antibiotic by Nonomuraea coxensis DSM 45129 ACS chemical biology
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [378]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2952997
    Benninghoff, J. C.; Kuschmierz, L.; Zhou, X.; Albersmeier, A.; Pham, T. K.; Busche, T.; Wright, P. C.; Kalinowski, J.; Makarova, K. S.; Brasen, C.; Flemming, H. - C.; Wingender, J.; Siebers, B. (2021): Response of the thermoacidophilic Archaeon Sulfolobus acidocaldarius to solvent stress exemplified by 1-butanol exposure Applied and environmental microbiology
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [377]
    2021 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2954831
    Kuhl, M.; Rückert, C.; Glaser, L.; Beganovic, S.; Luzhetskyy, A.; Kalinowski, J.; Wittmann, C. (Accepted): Microparticles enhance the formation of seven major classes of natural products in native and metabolically engineered actinobacteria through accelerated morphological development Biotechnology and bioengineering
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [376]
    2021 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2954389
    Oberbeckmann, S.; Bartosik, D.; Huang, S.; Werner, J.; Hirschfeld, C.; Wibberg, D.; Heiden, S. E.; Bunk, B.; Overmann, J.; Becher, D.; Kalinowski, J.; Schweder, T.; Labrenz, M.; Markert, S. (Accepted): Genomic and proteomic profiles of biofilms on microplastics are decoupled from artificial surface properties Environmental microbiology
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [375]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2951146
    Glaeser, S. P.; Rückert, C.; Abdelmohsen, U. R.; Winkler, A.; Blom, J.; Goesmann, A.; Kalinowski, J.; Hentschel, U.; Busse, H. - J.; Kampfer, P. (2021): Streptomyces dysideae sp. nov., isolated from a marine Mediterranean sponge Dysidea tupha. International journal of systematic and evolutionary microbiology
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [374]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2951141
    Blanc-Mathieu, R.; Dahle, H.; Hofgaard, A.; Brandt, D.; Ban, H.; Kalinowski, J.; Ogata, H.; Sandaa, R. - A. (2021): A persistent giant algal virus, with a unique morphology, encodes an unprecedented number of genes involved in energy metabolism. Journal of virology
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [373]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2951630 OA
    Maraci, Ö.; Antonatou-Papaioannou, A.; Jünemann, S.; Castillo, O.; Busche, T.; Kalinowski, J.; Caspers, B. (2021): The Gut Microbial Composition Is Species-Specific and Individual-Specific in Two Species of Estrildid Finches, the Bengalese Finch and the Zebra Finch Frontiers in Microbiology,12:619141
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [372]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952703
    Zwiener, T.; Mickoleit, F.; Dziuba, M.; Rückert, C.; Busche, T.; Kalinowski, J.; Faivre, D.; Uebe, R.; Schüler, D. (2021): Identification and elimination of genomic regions irrelevant for magnetosome biosynthesis by large-scale deletion in Magnetospirillum gryphiswaldense BMC Microbiology,21:(1):65
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [371]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952132
    Zwiener, T.; Dziuba, M.; Mickoleit, F.; Rückert, C.; Busche, T.; Kalinowski, J.; Uebe, R.; Schueler, D. (2021): Towards a 'chassis' for bacterial magnetosome biosynthesis: genome streamlining of Magnetospirillum gryphiswaldense by multiple deletions Microbial Cell Factories,20:(1):35
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [370]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2951159 OA
    Wolf, J.; Koblitz, J.; Albersmeier, A.; Kalinowski, J.; Siebers, B.; Schomburg, D.; Neumann-Schaal, M. (2021): Utilization of Phenol as Carbon Source by the Thermoacidophilic Archaeon Saccharolobus solfataricus P2 Is Limited by Oxygen Supply and the Cellular Stress Response Frontiers in Microbiology,11:587032
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [369]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2949961
    Nilsson, J. F.; Castellani, L. G.; Draghi, W. O.; Mogro, E. G.; Wibberg, D.; Winkler, A.; Hansen, L. H.; Schlüter, A.; Pühler, A.; Kalinowski, J.; Torres Tejerizo, G. A.; Pistorio, M. (2021): Global transcriptome analysis of Rhizobium favelukesii LPU83 in response to acid stress FEMS Microbiology Ecology,97:(1):fiaa235
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [368]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941608 OA
    Stadler, M.; Lambert, C.; Wibberg, D.; Kalinowski, J.; Cox, R. J.; Kolarik, M.; Kuhnert, E. (2020): Intragenomic polymorphisms in the ITS region of high-quality genomes of the Hypoxylaceae (Xylariales, Ascomycota) MYCOLOGICAL PROGRESS,19:(3): 235-245.
    PUB | PDF | DOI | WoS
     
  • [367]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943800 OA
    Wibberg, D.; Stadler, M.; Lambert, C.; Bunk, B.; Sproer, C.; Rückert, C.; Kalinowski, J.; Cox, R. J.; Kuhnert, E. (2020): High quality genome sequences of thirteen Hypoxylaceae (Ascomycota) strengthen the phylogenetic family backbone and enable the discovery of new taxa FUNGAL DIVERSITY
    PUB | PDF | DOI | WoS
     
  • [366]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2978170
    Shtenikov, M. D.; Ostapchuk, A. M.; Vasylieva, N. Y.; Luzhetskyy, A. M.; Rückert, C.; Kalinowski, J.; Ivanytsia, V. O. (2020): Characteristics of Genome of Bacillus velezensis ONU 553 Strain Isolated from the Bottom Sediments of the Black Sea Mikrobiolohichnyi Zhurnal = Microbiological Journal,82:(3): 14-21.
    PUB | DOI | Download (ext.)
     
  • [365]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946320 OA
    Droste, J.; Kulisch, M.; Wolf, T.; Schaffert, L.; Schneiker-Bekel, S.; Pühler, A.; Kalinowski, J. (2020): A maltose-regulated large genomic region is activated by the transcriptional regulator MalT in Actinoplanes sp. SE50/110 Applied microbiology and biotechnology,104: 9283–9294.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [364]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949440 OA
    Braun, R.; Schönberger, N.; Vinke, S.; Lederer, F.; Kalinowski, J.; Pollmann, K. (2020): Application of Next Generation Sequencing (NGS) in Phage Displayed Peptide Selection to Support the Identification of Arsenic-Binding Motifs Viruses,12:(12):1360
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [363]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946260 OA
    Radukic, M.; Brandt, D.; Haak, M.; Müller, K.; Kalinowski, J. (2020): Nanopore sequencing of native adeno-associated virus (AAV) single-stranded DNA using a transposase-based rapid protocol NAR Genomics and Bioinformatics,2:(4):lqaa074
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953267
    Schulte-Schrepping, J.; Reusch, N.; Paclik, D.; Baßler, K.; Schlickeiser, S.; Zhang, B.; Krämer, B.; Krammer, T.; Brumhard, S.; Bonaguro, L.; De Domenico, E.; Wendisch, D.; Grasshoff, M.; Kapellos, T. S.; Beckstette, M.; Pecht, T.; Saglam, A.; Dietrich, O.; Mei, H. E.; Schulz, A. R.; Conrad, C.; Kunkel, D.; Vafadarnejad, E.; Xu, C. - J.; Horne, A.; Herbert, M.; Drews, A.; Thibeault, C.; Pfeiffer, M.; Hippenstiel, S.; Hocke, A.; Müller-Redetzky, H.; Heim, K. - M.; Machleidt, F.; Uhrig, A.; Bosquillon de Jarcy, L.; Jürgens, L.; Stegemann, M.; Glösenkamp, C. R.; Volk, H. - D.; Goffinet, C.; Landthaler, M.; Wyler, E.; Georg, P.; Schneider, M.; Dang-Heine, C.; Neuwinger, N.; Kappert, K.; Tauber, R.; Corman, V.; Raabe, J.; Kaiser, K. M.; Vinh, M. T.; Rieke, G.; Meisel, C.; Ulas, T.; Becker, M.; Geffers, R.; Witzenrath, M.; Drosten, C.; Suttorp, N.; von Kalle, C.; Kurth, F.; Händler, K.; Schultze, J. L.; Aschenbrenner, A. C.; Li, Y.; Nattermann, J.; Sawitzki, B.; Saliba, A. - E.; Sander, L. E.; Angelov, A.; Bals, R.; Bartholomäus, A.; Becker, A.; Bezdan, D.; Bonifacio, E.; Bork, P.; Clavel, T.; Colome-Tatche, M.; Diefenbach, A.; Dilthey, A.; Fischer, N.; Förstner, K.; Frick, J. - S.; Gagneur, J.; Goesmann, A.; Hain, T.; Hummel, M.; Janssen, S.; Kalinowski, J.; Kallies, R.; Kehr, B.; Keller, A.; Kim-Hellmuth, S.; Klein, C.; Kohlbacher, O.; Korbel, J. O.; Kurth, I.; Landthaler, M.; Li, Y.; Ludwig, K.; Makarewicz, O.; Marz, M.; McHardy, A.; Mertes, C.; Nöthen, M.; Nürnberg, P.; Ohler, U.; Ossowski, S.; Overmann, J.; Peter, S.; Pfeffer, K.; Poetsch, A. R.; Pühler, A.; Rajewsky, N.; Ralser, M.; Rieß, O.; Ripke, S.; Nunes da Rocha, U.; Rosenstiel, P.; Saliba, A. - E.; Sander, L. E.; Sawitzki, B.; Schiffer, P.; Schulte, E. - C.; Schultze, J. L.; Sczyrba, A.; Stegle, O.; Stoye, J.; Theis, F.; Vehreschild, J.; Vogel, J.; von Kleist, M.; Walker, A.; Walter, J.; Wieczorek, D.; Ziebuhr, J. (2020): Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment Cell,182:(6): 1419-1440.e23.
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    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949051 OA
    Engel, K.; Pankoke, H.; Jünemann, S.; Brandl, H. B.; Sauer, J.; Griffith, S.; Kalinowski, J.; Caspers, B. (2020): Family matters: skin microbiome reflects the social group and spatial proximity in wild zebra finches BMC Ecology,20:(1):58
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    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950214
    Tian, D. - S.; Kuhnert, E.; Ouazzani, J.; Wibberg, D.; Kalinowski, J.; Cox, R. J. (2020): The sporothriolides. A new biosynthetic family of fungal secondary metabolites Chemical Science,11:(46): 12477-12484.
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    Toniutti, M. A.; Albicoro, F. J.; Castellani, L. G.; Lopez Garcia, S. L.; Fornasero, L. V.; Zuber, N. E.; Vera, L. M.; Vacca, C.; Cafiero, J. H.; Winkler, A.; Kalinowski, J.; Lagares, A.; Torres Tejerizo, G. A.; Del Papa, M. F. (2020): Genome sequence of Bradyrhizobium yuanmingense strain P10 130, a highly efficient nitrogen-fixing bacterium that could be used for Desmodium incanum inoculation. Gene
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    2020 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2948421
    Bleichert, P.; Butof, L.; Rückert, C.; Herzberg, M.; Francisco, R.; Morais, P. V.; Grass, G.; Kalinowski, J.; Nies, D. H. (Accepted): Generation and analysis of mutant strains of Escherichia coli and methicillin-resistant Staphylococcus aureus obtained by laboratory selection to survive on metallic copper surfaces. Applied and environmental microbiology
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    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949422
    Guerrero-Garzon, J. F.; Madland, E.; Zehl, M.; Singh, M.; Rezaei, S.; Aachmann, F. L.; Courtade, G.; Urban, E.; Rückert, C.; Busche, T.; Kalinowski, J.; Cao, Y. - R.; Jiang, Y.; Jiang, C. - L.; Selivanova, G.; Zotchev, S. B. (2020): Class IV Lasso Peptides Synergistically Induce Proliferation of Cancer Cells and Sensitize Them to Doxorubicin iScience,23:(12):101785
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    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950242
    Lichtenstein, D.; Mentz, A.; Schmidt, F. F.; Luckert, C.; Buhrke, T.; Marx-Stoelting, P.; Kalinowski, J.; Albaum, S.; Joos, T. O.; Poetz, O.; Braeuning, A. (2020): Transcript and protein marker patterns for the identification of steatotic compounds in human HepaRG cells Food and Chemical Toxicology,145:111690
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    Fritsch, V. N.; Loi, V. V.; Busche, T.; Tung, Q. N.; Lill, R.; Horvatek, P.; Wolz, C.; Kalinowski, J.; Antelmann, H. (2020): The alarmone (p)ppGpp confers tolerance to oxidative stress during the stationary phase by maintenance of redox and iron homeostasis in Staphylococcus aureus Free radical biology & medicine
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    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948762 OA
    Graf, M.; Haas, T.; Teleki, A.; Feith, A.; Cerff, M.; Wiechert, W.; Nöh, K.; Busche, T.; Kalinowski, J.; Takors, R. (2020): Revisiting the Growth Modulon of Corynebacterium glutamicum Under Glucose Limited Chemostat Conditions. Frontiers in Bioengineering and Biotechnology,8:584614
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    2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2945521 OA
    Kuhl, M.; Gläser, L.; Rebets, Y.; Rückert, C.; Sarkar, N.; Hartsch, T.; Kalinowski, J.; Luzhetskyy, A.; Wittmann, C. (2020): Microparticles globally reprogram Streptomyces albus toward accelerated morphogenesis, streamlined carbon core metabolism and enhanced production of the antituberculosis polyketide pamamycin Biotechnology and Bioengineering
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    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945474 OA
    Hemmerich, J.; Labib, M.; Steffens, C.; Reich, S. J.; Weiske, M.; Baumgart, M.; Rückert, C.; Ruwe, M.; Siebert, D.; Wendisch, V. F.; Kalinowski, J.; Wiechert, W.; Oldiges, M. (2020): Screening of a genome-reduced Corynebacterium glutamicum strain library for improved heterologous cutinase secretion Microbial Biotechnology,13:(6): 2020-2031.
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    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949080 OA
    Droste, J.; Ortseifen, V.; Schaffert, L.; Persicke, M.; Schneiker-Bekel, S.; Pühler, A.; Kalinowski, J. (2020): The expression of the acarbose biosynthesis gene cluster in Actinoplanes sp. SE50/110 is dependent on the growth phase. BMC genomics,21:818
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    Schaffert, L.; Jacob, L.; Schneiker-Bekel, S.; Persicke, M.; März, C.; Rückert, C.; Pühler, A.; Kalinowski, J. (2020): pSETT4, an Improved φC31-Based Integrative Vector System for Actinoplanes sp. SE50/110 Microbiology Resource Announcements,9:(39):e00596-20
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    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948423
    Herrera-Belaroussi, A.; Normand, P.; Pawlowski, K.; Fernandez, M. P.; Wibberg, D.; Kalinowski, J.; Brachmann, A.; Berckx, F.; Lee, N.; Blom, J.; Pozzi, A. C.; Fournier, P.; Bethencourt, L.; Dubost, A.; Abrouk, D.; Sellstedt, A. (2020): Candidatus Frankia nodulisporulans sp. nov., an Alnus glutinosa-infective Frankia species unable to grow in pure culture and able to sporulate in-planta Systematic and applied microbiology,43:(6):126134
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    Rust, M.; Helfrich, E. J. N.; Freeman, M. F.; Nanudorn, P.; Field, C. M.; Rückert, C.; Kundig, T.; Page, M. J.; Webb, V. L.; Kalinowski, J.; Sunagawa, S.; Piel, J. (2020): A multiproducer microbiome generates chemical diversity in the marine sponge Mycale hentscheli. Proceedings of the National Academy of Sciences of the United States of America,117:(17): 9508-9518.
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    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945458
    Allers, K.; Stahl-Hennig, C.; Fiedler, T.; Wibberg, D.; Hofmann, J.; Kunkel, D.; Moos, V.; Kreikemeyer, B.; Kalinowski, J.; Schneider, T. (2020): The colonic mucosa-associated microbiome in SIV infection: shift towards Bacteroidetes coincides with mucosal CD4(+) T cell depletion and enterocyte damage SCIENTIFIC REPORTS,10:(1)
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    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945532
    Bekiesch, P.; Zehl, M.; Domingo-Contreras, E.; Martin, J.; Perez-Victoria, I.; Reyes, F.; Kaplan, A.; Rückert, C.; Busche, T.; Kalinowski, J.; Zotchev, S. B. (2020): Viennamycins: Lipopeptides Produced by a Streptomyces sp. Journal of natural products,83:(8): 2381–2389.
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    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945782
    Franco, A.; Rückert, C.; Blom, J.; Busche, T.; Reichert, J.; Schubert, P.; Goesmann, A.; Kalinowski, J.; Wilke, T.; Kampfer, P.; Glaeser, S. P. (2020): High diversity of Vibrio spp. associated with different ecological niches in a marine aquaria system and description of Vibrio aquimaris sp. nov Systematic and applied microbiology,43:(5):126123
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    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946299 OA
    Kreienbaum, M.; Dörrich, A. K.; Brandt, D.; Schmid, N. E.; Leonhard, T.; Hager, F.; Brenzinger, S.; Hahn, J.; Glatter, T.; Ruwe, M.; Briegel, A.; Kalinowski, J.; Thormann, K. M. (2020): Isolation and Characterization of Shewanella Phage Thanatos Infecting and Lysing Shewanella oneidensis and Promoting Nascent Biofilm Formation Frontiers in Microbiology,11:573260
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    2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2945214
    Linzner, N.; Fritsch, V. N.; Busche, T.; Tung, Q. N.; Loi, V. V.; Bernhardt, J.; Kalinowski, J.; Antelmann, H. (2020): The plant-derived naphthoquinone lapachol causes an oxidative stress response in Staphylococcus aureus. Free radical biology & medicine,158: 126-136.
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    2020 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2945465
    Schmidt, F.; Planatscher, H.; Lichtenstein, D.; Mentz, A.; Kalinowski, J.; Joos, T.; Braeuning, A.; Poetz, O. (2020): DETERMINATION OF ADDITIVE, SYNERGISTIC AND ANTAGONISTIC EFFECTS BY THE ANALYSES OF PROTEIN MARKERS IN PESTICIDE MIXTURE-TREATED HEPARG-CELLS. In: DRUG METABOLISM AND PHARMACOKINETICS. Tokyo: Japanese Soc Study Xenobiotics. (35). S. S50.
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    Siebert, D.; Busche, T.; Metz, A. Y.; Smaili, M.; Queck, B. A. W.; Kalinowski, J.; Eikmanns, B. J. (2020): Genetic Engineering of Oligotropha carboxidovorans Strain OM5-A Promising Candidate for the Aerobic Utilization of Synthesis Gas ACS SYNTHETIC BIOLOGY,9:(6): 1426-1440.
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    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942996 OA
    Schaffert, L.; Schneiker-Bekel, S.; Gierhake, J.; Droste, J.; Persicke, M.; Rosen, W.; Pühler, A.; Kalinowski, J. (2020): Absence of the highly expressed small carbohydrate-binding protein Cgt improves the acarbose formation in Actinoplanes sp. SE50/110 Applied Microbiology and Biotechnology,104: 5395–5408.
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    2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2943712
    Kissling, L.; Schneider, C.; Seibel, K.; Dorjjugder, N.; Busche, T.; Kalinowski, J.; Mack, M. (2020): The roseoflavin producer Streptomyces davaonensis has a high catalytic capacity and specific genetic adaptations with regard to the biosynthesis of riboflavin. Environmental microbiology
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    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943414 OA
    Voitsekhovskaia, I.; Paulus, C.; Dahlem, C.; Rebets, Y.; Nadmid, S.; Zapp, J.; Axenov-Gribanov, D.; Rückert, C.; Timofeyev, M.; Kalinowski, J.; Kiemer, A. K.; Luzhetskyy, A. (2020): Baikalomycins A-C, New Aquayamycin-Type Angucyclines Isolated from Lake Baikal Derived Streptomyces sp. IB201691-2A Microorganisms,8:(5):680
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    2020 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2943812
    Radukic, M.; Brandt, D.; Haak, M.; Kalinowski, J.; Müller, K. (2020): Long-Read Characterization of Adeno-Associated Virus Packaged DNA by Direct Nanopore Sequencing Reveals Genome Fusions and Recombination between Genomes and Producer Plasmids. In: MOLECULAR THERAPY. Cambridge: Cell Press. (28). S. 398-399.
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    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943125 OA
    Berckx, F.; Wibberg, D.; Kalinowski, J.; Pawlowski, K. (2020): The Peptidoglycan Biosynthesis Gene murC in Frankia: Actinorhizal vs. Plant Type. Genes,11:(4)
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    2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2940386
    Lick, S.; Krockel, L.; Wibberg, D.; Winkler, A.; Blom, J.; Bantleon, A.; Goesmann, A.; Kalinowski, J. (2020): Pseudomonas carnis sp. nov., isolated from meat. International journal of systematic and evolutionary microbiology,70:(3): 1528-1540.
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    2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2942457 OA
    Guerrero-Garzón, J. F.; Zehl, M.; Schneider, O.; Rückert, C.; Busche, T.; Kalinowski, J.; Bredholt, H.; Zotchev, S. B. (2020): Streptomyces spp. From the Marine Sponge Antho dichotoma: Analyses of Secondary Metabolite Biosynthesis Gene Clusters and Some of Their Products Frontiers in Microbiology,11:437
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    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941248
    Braeuning, A.; Mentz, A.; Schmidt, F. F.; Albaum, S.; Planatscher, H.; Kalinowski, J.; Joos, T. O.; Poetz, O.; Lichtenstein, D. (2020): RNA-PROTEIN CORRELATION OF LIVER TOXICITY MARKERS IN HEPARG CELLS EXCLI JOURNAL,19: 135-153.
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    2020 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2941899
    Rust, M.; Helfrich, E. J. N.; Freeman, M. F.; Nanudorn, P.; Field, C.; Rückert, C.; Page, M. J.; Webb, V. L.; Kalinowski, J.; Sunagawa, S.; Piel, J. (2020): A Multi-Producer Microbiome Creates Chemical Diversity in the Marine Sponge Mycale hentscheli. In: MARINE DRUGS. Basel: Mdpi. (18).
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    2020 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2941898
    Cahn, J. K. B.; Peters, E. E.; Lotti, A.; Field, C.; Rückert, C.; Kalinowski, J.; Sunagawa, S.; Takeyama, H.; Piel, J. (2020): The Evolutionary Profile of a Superproducer Sponge Symbiont, Candidatus "Entheonella". In: MARINE DRUGS. Basel: Mdpi. (18).
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    2020 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2941893
    Schmidt, F.; Steinhilber, A.; Mentz, A.; Kalinowski, J.; Lichtenstein, D.; Braeuning, A.; Joos, T.; Poetz, O. (2020): Mixture effects on toxicologically relevant liver proteins after pesticide treatment in hepaRG cells. In: NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY. New york: Springer. (393). S. 15.
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    2019 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2934136
    Braeuning, A.; Lichtenstein, D.; Mentz, A.; Kalinowski, J.; Schmidt, F.; Poetz, O.; Lampen, A. (2019): A targeted transcriptomic and proteomic approach to assess hepatotoxic mixture effects in vitro Naunyn-Schmiedeberg's Archives of Pharmacology,392:(S1): S76-S77.
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934273 OA
    Gräwe, A.; Dreyer, A.; Vornholt, T.; Barteczko, U.; Buchholz, L.; Drews, G.; Ho, U. L.; Jackowski, M. E.; Kracht, M.; Lüders, J.; Bleckwehl, T.; Rositzka, L.; Ruwe, M.; Wittchen, M.; Lutter, P.; Müller, K.; Kalinowski, J. (2019): A paper-based, cell-free biosensor system for the detection of heavy metals and date rape drugs. PloS one,14:(3):e0210940
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    2019 | Preprint | Unveröffentlicht | PUB-ID: 2949925
    Lale, R.; Tietze, L.; Nesje, J.; Onsager, I.; Engelhardt, K.; Wong, C. F. A.; Akan, M.; Hummel, N.; Kalinowski, J.; Rückert, C.; Hohmann-Marriott, M. F. (Unpublished): A universal method for gene expression engineering bioRxiv
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935580
    Baulig, A.; Helmle, I.; Bader, M.; Wolf, F.; Kulik, A.; Al-Dilaimi, A.; Wibberg, D.; Kalinowski, J.; Gross, H.; Kaysser, L. (2019): Biosynthetic reconstitution of deoxysugar phosphoramidate metalloprotease inhibitors using an N-P-bond-forming kinase CHEMICAL SCIENCE,10:(16): 4486-4490.
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936490
    Seeger, B.; Mentz, A.; Knebel, C.; Schmidt, F.; Bednarz, H.; Niehaus, K.; Albaum, S.; Kalinowski, J.; Noll, T.; Steinberg, P.; Marx-Stoelting, P.; Heise, T. (2019): Assessment of mixture toxicity of (tri)azoles and their hepatotoxic effects in vitro by means of omics technologies. Archives of toxicology,93:(8): 2321-2333.
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933518
    Bischof, L. F.; Haurat, M. F.; Hoffmann, L.; Albersmeier, A.; Wolf, J.; Neu, A.; Pham, T. K.; Albaum, S.; Jakobi, T.; Schouten, S.; Neumann-Schaal, M.; Wright, P. C.; Kalinowski, J.; Siebers, B.; Albers, S. - V. (2019): Early Response of Sulfolobus acidocaldarius to Nutrient Limitation FRONTIERS IN MICROBIOLOGY,9:3201
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935870
    Haas, T.; Graf, M.; Niess, A.; Busche, T.; Kalinowski, J.; Blombach, B.; Takors, R. (2019): Identifying the Growth Modulon of Corynebacterium glutamicum FRONTIERS IN MICROBIOLOGY,10:974
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937242
    Sorieul, L.; Rückert, C.; Al-Dilaimi, A.; Winkler, A.; Kalinowski, J.; Pham, D.; Wabete, N.; Boulo, V. (2019): Whole-Genome Sequence of Pseudoalteromonas sp. NC201, a Probiotic Strain for Litopenaeus stylirostris Hatcheries in New Caledonia Microbiology resource announcements,8:(34):e00477-19
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936907
    Brandt, C.; Viehweger, A.; Singh, A.; Pletz, M. W.; Wibberg, D.; Kalinowski, J.; Lerch, S.; Muller, B.; Makarewicz, O. (2019): Assessing genetic diversity and similarity of 435 KPC-carrying plasmids. Scientific reports,9:(1):11223
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936910
    Nguyen, T. V.; Wibberg, D.; Vigil-Stenman, T.; Berckx, F.; Battenberg, K.; Demchenko, K. N.; Blom, J.; Fernandez, M. P.; Yamanaka, T.; Berry, A. M.; Kalinowski, J.; Brachmann, A.; Pawlowski, K. (2019): Frankia-enriched metagenomes from the earliest diverging symbiotic Frankia cluster: They come in teams. Genome biology and evolution,11:(8): 2273–2291.
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    2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936724
    Fritsch, V. N.; Loi, V. V.; Busche, T.; Sommer, A.; Tedin, K.; Nurnberg, D. J.; Kalinowski, J.; Bernhardt, J.; Fulde, M.; Antelmann, H. (2019): The MarR-type repressor MhqR confers quinone and antimicrobial resistance in <i>Staphylococcus aureus</i>. Antioxidants & redox signaling,31:(16): 1235-1252.
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936019
    Huennefeld, M.; Persicke, M.; Kalinowski, J.; Frunzke, J. (2019): The MarR-Type Regulator MalR Is Involved in Stress-Responsive Cell Envelope Remodeling in Corynebacterium glutamicum FRONTIERS IN MICROBIOLOGY,10:1039
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936922
    Graf, M.; Haas, T.; Mueller, F.; Buchmann, A.; Harm-Bekbenbetova, J.; Freund, A.; Niess, A.; Persicke, M.; Kalinowski, J.; Blombach, B.; Takors, R. (2019): Continuous Adaptive Evolution of a Fast-Growing Corynebacterium glutamicum Strain Independent of Protocatechuate Frontiers in Microbiology ,10:1648
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933296
    Dostalova, H.; Busche, T.; Holatko, J.; Rucka, L.; Stepanek, V.; Barvik, I.; Nesvera, J.; Kalinowski, J.; Patek, M. (2019): Overlap of Promoter Recognition Specificity of Stress Response Sigma Factors SigD and SigH in Corynebacterium glutamicum ATCC 13032 FRONTIERS IN MICROBIOLOGY,9:(50):3287
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933348
    Jahanshah, G.; Miess, H.; Busche, T.; Rückert, C.; Kalinowski, J.; Rokni-Zadeh, H.; Gross, H. (2019): Draft Genome Sequence of Micromonospora sp. Strain MW-13, a Bacterial Strain with Antibacterial Properties and Plant Growth Promotion Potential Isolated from the Rhizosphere of Wheat in Iran. Microbiology resource announcements,8:(2):e01375-18
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936260
    Arenas-Lopez, C.; Locker, J.; Orol, D.; Walter, F.; Busche, T.; Kalinowski, J.; Minton, N. P.; Kovacs, K.; Winzer, K. (2019): The genetic basis of 3-hydroxypropanoate metabolism in Cupriavidus necator H16. Biotechnology for biofuels,12:(1):150
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    Ruwe, M.; Persicke, M.; Busche, T.; Müller, B.; Kalinowski, J. (2019): Physiology and Transcriptional Analysis of (p)ppGpp-Related Regulatory Effects in Corynebacterium glutamicum Frontiers in Microbiology,10:2769
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    Lick, S.; Krockel, L.; Wibberg, D.; Winkler, A.; Blom, J.; Goesmann, A.; Kalinowski, J. (2019): Pseudomonas bubulae sp. nov., isolated from beef. International journal of systematic and evolutionary microbiology,70:(1): 292-301.
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938413 OA
    Schaffert, L.; Schneiker-Bekel, S.; Dymek, S.; Droste, J.; Persicke, M.; Busche, T.; Brandt, D.; Pühler, A.; Kalinowski, J. (2019): Essentiality of the Maltase AmlE in Maltose Utilization and Its Transcriptional Regulation by the Repressor AmlR in the Acarbose-Producing Bacterium Actinoplanes sp. SE50/110 Frontiers in Microbiology,10:2448
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936723
    Lopatniuk, M.; Myronovskyi, M.; Nottebrock, A.; Busche, T.; Kalinowski, J.; Ostash, B.; Fedorenko, V.; Luzhetskyy, A. (2019): Effect of "ribosome engineering" on the transcription level and production of S. albus indigenous secondary metabolites. Applied microbiology and biotechnology,103:(17): 7097–7110.
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936726
    Grenz, S.; Baumann, P. T.; Rückert, C.; Nebel, B. A.; Siebert, D.; Schwentner, A.; Eikmanns, B. J.; Hauer, B.; Kalinowski, J.; Takors, R.; Blombach, B. (2019): Exploiting Hydrogenophaga pseudoflava for aerobic syngas-based production of chemicals. Metabolic engineering,55: 220-230.
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936439 OA
    Schaffert, L.; März, C.; Burkhardt, L.; Droste, J.; Brandt, D.; Busche, T.; Rosen, W.; Schneiker-Bekel, S.; Persicke, M.; Pühler, A.; Kalinowski, J. (2019): Evaluation of vector systems and promoters for overexpression of the acarbose biosynthesis gene acbC in Actinoplanes sp. SE50/110 Microbial Cell Factories,18:(1):114
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    2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2934794
    Farr, M.; Ferreira, S.; Al-Dilaimi, A.; Bogeholz, S.; Goesmann, A.; Kalinowski, J.; Knabbe, C.; Faber, L.; Oliveira, J. P.; Rudolph, V. (2019): Fabry disease: Detection of Alu-mediated exon duplication by NGS. Molecular and cellular probes,45: 79-83.
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937135 OA
    Pucker, B.; Rückert, C.; Stracke, R.; Viehöver, P.; Kalinowski, J.; Weisshaar, B. (2019): Twenty-Five Years of Propagation in Suspension Cell Culture Results in Substantial Alterations of the Arabidopsis Thaliana Genome Genes,10:(9):671
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937344
    Rebets, Y.; Nadmid, S.; Paulus, C.; Dahlem, C.; Herrmann, J.; Huebner, H.; Rückert, C.; Kiemer, A. K.; Gmeiner, P.; Kalinowski, J.; Mueller, R.; Luzhetskyy, A. (2019): Perquinolines A-C: Unprecedented Bacterial Tetrahydroisoquinolines Involving an Intriguing Biosynthesis Angewandte Chemie International Edition,58:(37): 12930-12934.
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    2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936603
    Quehenberger, J.; Albersmeier, A.; Glatzel, H.; Hackl, M.; Kalinowski, J.; Spadiut, O. (2019): A defined cultivation medium for Sulfolobus acidocaldarius JOURNAL OF BIOTECHNOLOGY,301: 56-67.
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935892
    Loi, V. V.; Huyen, N. T. T.; Busche, T.; Tung, Q. N.; Gruhlke, M. C. H.; Kalinowski, J.; Bernhardt, J.; Slusarenko, A. J.; Antelmann, H. (2019): Staphylococcus aureus responds to allicin by global S-thioallylation - Role of the Brx/BSH/YpdA pathway and the disulfide reductase MerA to overcome allicin stress. Free radical biology & medicine,139: 55-69.
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936033
    Tsolis, K. C.; Hamed, M. B.; Simoens, K.; Koepff, J.; Busche, T.; Rückert, C.; Oldiges, M.; Kalinowski, J.; Anne, J.; Kormanec, J.; Bernaerts, K.; Karamanou, S.; Economou, A. (2019): Secretome Dynamics in a Gram-Positive Bacterial Model MOLECULAR & CELLULAR PROTEOMICS,18:(3): 423-436.
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936035
    Koshla, O. T.; Rokytskyy, I. V.; Ostash, I. S.; Busche, T.; Kalinowski, J.; Moesker, E.; Suessmuth, R. D.; Fedorenko, V. O.; Ostash, B. O. (2019): Secondary Metabolome and Transcriptome of Streptomyces albus J1074 in Liquid Medium SG2 CYTOLOGY AND GENETICS,53:(1): 1-7.
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934613
    Hain, C.; Cieslak, C.; Mentz, A.; Stranzenbach, R.; Kalinowski, J.; Stadler, R. (2019): Molekulare Diagnostik bei kutanen T-Zell Lymphomen – Identifizierung neuer potentiell therapierelevanter Biomarke JOURNAL DER DEUTSCHEN DERMATOLOGISCHEN GESELLSCHAFT,17:(Suppl. 1): 1.
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930296 OA
    Whitford, C. M.; Dymek, S.; Kerkhoff, D.; März, C.; Schmidt, O.; Edich, M.; Droste, J.; Pucker, B.; Rückert, C.; Kalinowski, J. (2018): Auxotrophy to Xeno-DNA: an exploration of combinatorial mechanisms for a high-fidelity biosafety system for synthetic biology applications Journal of Biological Engineering,12:(1):13
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    2018 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2978171
    Grenz, S.; Baumann, P.; Nebel, B.; Rückert, C.; Kalinowski, J.; Takors, R.; Blombach, B. (2018): Aerobe Produktion von Isoprenoiden aus Synthesegas mit DSM1084. In: Chemie Ingenieur Technik. Wiley-VCH. (90). S. 1254.
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919984 OA
    Neubauer, P.; Widmann, C.; Wibberg, D.; Schröder, L.; Frese, M.; Kottke, T.; Kalinowski, J.; Niemann, H.; Sewald, N. (2018): A flavin-dependent halogenase from metagenomic analysis prefers bromination over chlorination PLoS ONE,13:(5):e0196797
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931971
    Ganschow, S.; Silvery, J.; Kalinowski, J.; Tiemann, C. (2018): toaSTR: A web application for forensic STR genotyping by massively parallel sequencing Forensic Science International: Genetics ,37: 21-28.
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932963
    Schneider, O.; Simic, N.; Aachmann, F. L.; Rückert, C.; Kristiansen, K. A.; Kalinowski, J.; Jiang, Y.; Wang, L.; Jiang, C. - L.; Lale, R.; Zotchev, S. B. (2018): Genome Mining of Streptomyces sp. YIM 130001 Isolated From Lichen Affords New Thiopeptide Antibiotic FRONTIERS IN MICROBIOLOGY,9:3139
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932967
    Van Loi, V.; Busche, T.; Preuss, T.; Kalinowski, J.; Bernhardt, J.; Antelmann, H. (2018): The AGXX (R) Antimicrobial Coating Causes a Thiol-Specific Oxidative Stress Response and Protein S-bacillithiolation in Staphylococcus aureus FRONTIERS IN MICROBIOLOGY,9:3037
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917042
    Kranz, A.; Busche, T.; Vogel, A.; Usadel, B.; Kalinowski, J.; Bott, M.; Polen, T. (2018): RNAseq analysis of alpha-proteobacterium Gluconobacter oxydans 621H BMC GENOMICS,19:(1):17
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918668
    Hamed, A.; Abdel-Razek, A. S.; Frese, M.; Wibberg, D.; El-Haddad, A. F.; Ibrahim, T. M. A.; Kalinowski, J.; Sewald, N.; Shaaban, M. (2018): N-Acetylborrelidin B: a new bioactive metabolite from Streptomyces mutabilis sp MII Zeitschrift für Naturforschung C,73:(1-2): 49-57.
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932964
    Bracharz, F.; Helmdach, D.; Aschenbrenner, I.; Funck, N.; Wibberg, D.; Winkler, A.; Bohnen, F.; Kalinowski, J.; Mehlmer, N.; Brueck, T. B. (2018): Harvest of the Oleaginous Microalgae Scenedesmus obtusiusculus by Flocculation From Culture Based on Natural Water Sources FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY,6:200
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933021
    Jiao, J.; Paterson, J.; Busche, T.; Rückert, C.; Kalinowski, J.; Harwani, D.; Grosso, H. (2018): Draft Genome Sequence of Streptomyces sp. Strain DH-12, a Soilborne Isolate from the Thar Desert with Broad-Spectrum Antibacterial Activity MICROBIOLOGY RESOURCE ANNOUNCEMENTS,6:(9):UNSP e00108-18
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932806
    Yuecel, O.; Wibberg, D.; Philipp, B.; Kalinowski, J. (2018): Genome Sequence of the Bile Salt-Degrading Bacterium Novosphingobium sp. Strain Chol11, a Model Organism for Bacterial Steroid Catabolism MICROBIOLOGY RESOURCE ANNOUNCEMENTS,6:(1):UNSP e01372-17
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931524
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921229
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    Paulus, C.; Rebets, Y.; Zapp, J.; Rückert, C.; Kalinowski, J.; Luzhetskyy, A. (2018): New Alpiniamides From Streptomyces sp IB2014/011-12 Assembled by an Unusual Hybrid Non-ribosomal Peptide Synthetase Trans-AT Polyketide Synthase Enzyme FRONTIERS IN MICROBIOLOGY,9:1959
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920940
    Kibret, M.; Guerrero-Garzon, J. F.; Urban, E.; Zehl, M.; Wronski, V. - K.; Rückert, C.; Busche, T.; Kalinowski, J.; Rollinger, J. M.; Abate, D.; Zotchev, S. B. (2018): Streptomyces spp. From Ethiopia Producing Antimicrobial Compounds: Characterization via Bioassays, Genome Analyses, and Mass Spectrometry FRONTIERS IN MICROBIOLOGY,9:13
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920777
    Celis, J. S.; Wibberg, D.; Ramírez-Portilla, C.; Rupp, O.; Sczyrba, A.; Winkler, A.; Kalinowski, J.; Wilke, T. (2018): Binning Enables Efficient Host Genome Reconstruction in Cnidarian Holobionts GigaScience,7:(7):giy075
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920679
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920680
    Adamek, M.; Alanjary, M.; Sales-Ortells, H.; Goodfellow, M.; Bull, A. T.; Winkler, A.; Wibberg, D.; Kalinowski, J.; Ziemert, N. (2018): Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species BMC GENOMICS,19:(1):15
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    Lange, J.; Muench, E.; Mueller, J.; Busche, T.; Kalinowski, J.; Takors, R.; Blombach, B. (2018): Deciphering the Adaptation of Corynebacterium glutamicum in Transition from Aerobiosis via Microaerobiosis to Anaerobiosis GENES,9:(6):297
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917736
    Vu, V. L.; Busche, T.; Tedin, K.; Bernhardt, J.; Wollenhaupt, J.; Huyen, N. T. T.; Weise, C.; Kalinowski, J.; Wahl, M. C.; Fulde, M.; Antelmann, H. (2018): Redox-Sensing Under Hypochlorite Stress and Infection Conditions by the Rrf2-Family Repressor HypR in Staphylococcus aureus ANTIOXIDANTS & REDOX SIGNALING,29:(7): 22.
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919053
    Tsolis, K. C.; Tsare, E. - P.; Orfanoudaki, G.; Busche, T.; Kanaki, K.; Ramakrishnan, R.; Rousseau, F.; Schymkowitz, J.; Rückert, C.; Kalinowski, J.; Anne, J.; Karamanou, S.; Klapa, M. I.; Economou, A. (2018): Comprehensive subcellular topologies of polypeptides in Streptomyces MICROBIAL CELL FACTORIES,17:(1):12
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919058
    Senges, C. H. R.; Al-Dilaimi, A.; Marchbank, D. H.; Wibberg, D.; Winkler, A.; Haltli, B.; Nowrousian, M.; Kalinowski, J.; Kerr, R. G.; Bandow, J. E. (2018): The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,115:(10): 2490-2495.
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916925
    Engel, K.; Sauer, J.; Jünemann, S.; Winkler, A.; Wibberg, D.; Kalinowski, J.; Tauch, A.; Caspers, B. (2018): Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon Sequencing Microbial Ecology,76:(2): 518-529.
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920133 OA
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917296 OA
    Wittchen, M.; Busche, T.; Gaspar, A. H.; Lee, J. H.; Ton-That, H.; Kalinowski, J.; Tauch, A. (2018): Transcriptome sequencing of the human pathogen Corynebacterium diphtheriae NCTC 13129 provides detailed insights into its transcriptional landscape and into DtxR-mediated transcriptional regulation BMC Genomics,19:(1):82
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921026 OA
    Haak, M.; Vinke, S.; Keller, W.; Droste, J.; Rückert, C.; Kalinowski, J.; Pucker, B. (2018): High Quality de Novo Transcriptome Assembly of Croton tiglium Frontiers in Molecular Biosciences,5:62
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935511
    Liu, Y.; Brandt, D.; Ishino, S.; Ishino, Y.; Koonin, E. V.; Kalinowski, J.; Krupovic, M.; Prangishvili, D. (2018): New archaeal viruses discovered by metagenomic analysis of viral communities in enrichment cultures Environmental Microbiology,21:(6): 2002-2014.
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917735
    Wagner, M.; Shen, L.; Albersmeier, A.; van der Kolk, N.; Kim, S.; Cha, J.; Brasen, C.; Kalinowski, J.; Siebers, B.; Albers, S. - V. (2018): Sulfolobus acidocaldarius Transports Pentoses via a Carbohydrate Uptake Transporter 2 (CUT2)-Type ABC Transporter and Metabolizes Them through the Aldolase-Independent Weimberg Pathway APPLIED AND ENVIRONMENTAL MICROBIOLOGY,84:(3):19
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932986
    Schmidt, F. F.; Steinhilber, A. E.; Hammer, H. S.; Mentz, A.; Kalinowski, J.; Lichtenstein, D.; Braeuning, A.; Marx-Stoelting, P.; Lampen, A.; Joos, T.; Poetz, O. (2018): Analysis of toxicologically relevant biomarkers in pesticide-treated HepaRG cells by MS-based immunoassays TOXICOLOGY LETTERS,295:(Suppl. 1):S87
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931492
    Yushchuk, O.; Ostash, I.; Vlasiuk, I.; Gren, T.; Luzhetskyy, A.; Kalinowski, J.; Fedorenko, V.; Ostash, B. (2018): Heterologous AdpA transcription factors enhance landomycin production in Streptomyces cyanogenus S136 under a broad range of growth conditions APPLIED MICROBIOLOGY AND BIOTECHNOLOGY,102:(19): 8419-8428.
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930276
    Ludwig, P.; Sevin, D. C.; Busche, T.; Kalinowski, J.; Bourdeaux, F.; Grininger, M.; Mack, M. (2018): Characterization of the small flavin-binding dodecin in the roseoflavin producer Streptomyces davawensis MICROBIOLOGY-SGM,164:(6): 908-919.
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920267
    Zirpel, B.; Degenhardt, F.; Zammarelli, C.; Wibberg, D.; Kalinowski, J.; Stehle, F.; Kayser, O. (2018): Optimization of Delta(9)-tetrahydrocannabinolic acid synthase production in Komagataella phaffii via post-translational bottleneck identification JOURNAL OF BIOTECHNOLOGY,272: 40-47.
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920690
    Schwentner, A.; Feith, A.; Muench, E.; Busche, T.; Rückert, C.; Kalinowski, J.; Takors, R.; Blombach, B. (2018): Metabolic engineering to guide evolution - Creating a novel mode for L-valine production with Corynebacterium glutamicum METABOLIC ENGINEERING,47: 31-41.
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    Mori, T.; Cahn, J. K. B.; Wilson, M. C.; Meoded, R. A.; Wiebach, V.; Martinez, A. F. C.; Helfrich, E. J. N.; Albersmeier, A.; Wibberg, D.; Datwyler, S.; Keren, R.; Lavy, A.; Rückert, C.; Ilan, M.; Kalinowski, J.; Matsunaga, S.; Takeyama, H.; Piel, J. (2018): Single-bacterial genomics validates rich and varied specialized metabolism of uncultivated Entotheonella sponge symbionts PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,115:(8): 1718-1723.
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    Landwehr, W.; Kaempfer, P.; Glaeser, S. P.; Rückert, C.; Kalinowski, J.; Blom, J.; Goesmann, A.; Mack, M.; Schumann, P.; Atasayar, E.; Hahnke, R. L.; Rohde, M.; Martin, K.; Stadler, M.; Wink, J. (2018): Taxonomic analyses of members of the Streptomyces cinnabarinus cluster, description of Streptomyces cinnabarigriseus sp nov and Streptomyces davaonensis sp nov. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY,68:(1): 382-393.
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    Baumgart, M.; Unthan, S.; Kloss, R.; Radek, A.; Polen, T.; Tenhaef, N.; Müller, M. F.; Küberl, A.; Siebert, D.; Brühl, N.; Marin, K.; Hans, S.; Krämer, R.; Bott, M.; Kalinowski, J.; Wiechert, W.; Seibold, G.; Frunzke, J.; Rückert, C.; Wendisch, V. F.; Noack, S. (2018): Corynebacterium glutamicum chassis C1*: Building and testing a novel platform host for synthetic biology and industrial biotechnology ACS Synthetic Biology,7:(1): 132–144.
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920691
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920259
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918672
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    Crnovčić, I.; Rückert, C.; Semsary, S.; Lang, M.; Kalinowski, J.; Keller, U. (2017): Genetic interrelations in the actinomycin biosynthetic gene clusters of Streptomyces antibioticus IMRU 3720 and Streptomyces chrysomallus ATCC11523, producers of actinomycin X and actinomycin C. Adv Appl Bioinform Chem,10: 29-46.
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    Gren, T.; Ortseifen, V.; Wibberg, D.; Schneiker-Bekel, S.; Bednarz, H.; Niehaus, K.; Zemke, T.; Persicke, M.; Pühler, A.; Kalinowski, J. (2016): Genetic engineering in Actinoplanes sp SE50/110-development of an intergeneric conjugation system for the introduction of actinophage-based integrative vectors Journal of Biotechnology,232: 79-88.
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    Jagmann, N.; Bleicher, V.; Busche, T.; Kalinowski, J.; Philipp, B. (2016): The guanidinobutyrase GbuA is essential for the alkylquinolone-regulated pyocyanin production during parasitic growth of Pseudomonas aeruginosa in co-culture with Aeromonas hydrophila ENVIRONMENTAL MICROBIOLOGY,18:(10): 3550-3564.
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    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905947
    Zimmermann, J.; Rückert, C.; Kalinowski, J.; Lipski, A. (2016): Corynebacterium crudilactis sp. nov., a new Corynebacterium species isolated from raw cow´s milk. Int J Syst Evol Microbiol,66:(12): 5288-5293.
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    Wolf, T.; Gren, T.; Thieme, E.; Wibberg, D.; Zemke, T.; Pühler, A.; Kalinowski, J. (2016): Targeted genome editing in the rare actinomycete Actinoplanes sp SE50/110 by using the CRISPR/Cas9 System Journal of Biotechnology,231: 122-128.
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    Manderscheid, N.; Bilyk, B.; Busche, T.; Kalinowski, J.; Paululat, T.; Bechthold, A.; Petzke, L.; Luzhetskyy, A. (2016): An influence of the copy number of biosynthetic gene clusters on the production level of antibiotics in a heterologous host JOURNAL OF BIOTECHNOLOGY,232: 110-117.
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    Muller, C.; Cacaci, M.; Sauvageot, N.; Sanguinetti, M.; Rattei, T.; Eder, T.; Giard, J. - C.; Kalinowski, J.; Hain, T.; Hartke, A. (2015): The Intraperitoneal Transcriptome of the Opportunistic Pathogen Enterococcus faecalis in Mice PLoS ONE,10:(5):e0126143
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    Leipoldt, F.; Zeyhle, P.; Kulik, A.; Kalinowski, J.; Heide, L.; Kaysser, L. (2015): Diversity of ABBA Prenyltransferases in Marine Streptomyces sp CNQ-509: Promiscuous Enzymes for the Biosynthesis of Mixed Terpenoid Compounds Plos One,10:(12):e0143237
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    Kurosawa, K.; Plassmeier, J.; Kalinowski, J.; Rückert, C.; Sinskey, A. J. (2015): Engineering L-arabinose metabolism in triacylglycerol-producing Rhodococcus opacus for lignocellulosic fuel production Metabolic engineering,30: 89-95.
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    Irla, M.; Neshat, A.; Brautaset, T.; Rückert, C.; Kalinowski, J.; Wendisch, V. F. (2015): Transcriptome analysis of thermophilic methylotrophic Bacillus methanolicus MGA3 using RNA-sequencing provides detailed insights into its previously uncharted transcriptional landscape BMC Genomics,16:(1):73
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    Rückert, C.; Leipoldt, F.; Zeyhle, P.; Fenical, W.; Jensen, P. R.; Kalinowski, J.; Heide, L.; Kaysser, L. (2015): Complete Genome Sequence of Streptomyces sp. CNQ-509, a Prolific Producer of Meroterpenoid Chemistry Journal of Biotechnology,216: 140-141.
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    Oelschlägel, M.; Rückert, C.; Kalinowski, J.; Schmidt, G.; Schlömann, M.; Tischler, D. (2015): Sphingopyxis fribergensis sp. nov., a soil bacterium with the ability to degrade styrene and phenylacetic acid International journal of systematic and evolutionary microbiology,65:(Part 9): 3008-3015.
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    Al-Dilaimi, A.; Bednarz, H.; Lömker, A.; Niehaus, K.; Kalinowski, J.; Rückert, C. (2015): Revisiting Corynebacterium glyciniphilum (ex Kubota et al. 1972) sp. nov., nom. rev., isolated from putrefied banana International journal of systematic and evolutionary microbiology,65:(Pt 1): 177-182.
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    Ortseifen, V.; Winkler, A.; Albersmeier, A.; Wendler, S.; Pühler, A.; Kalinowski, J.; Rückert, C. (2015): Complete Genome Sequence of the Actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid Journal of Biotechnology,194: 81-83.
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    Mahr, R.; Gaetgens, C.; Gaetgens, J.; Polen, T.; Kalinowski, J.; Frunzke, J. (2015): Biosensor-driven adaptive laboratory evolution of L-valine production in Corynebacterium glutamicum Metabolic Engineering,32: 184-194.
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    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2759737
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    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2732884
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2653196
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685853
    Zeyhle, P.; Bauer, J. S.; Kalinowski, J.; Shin-ya, K.; Gross, H.; Heide, L. (2014): Genome-Based Discovery of a Novel Membrane-Bound 1,6-Dihydroxyphenazine Prenyltransferase from a Marine Actinomycete PLoS ONE,9:(6):e99122
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699107
    Rebets, Y.; Tokovenko, B.; Lushchyk, I.; Rückert, C.; Zaburannyi, N.; Bechthold, A.; Kalinowski, J.; Luzhetskyy, A. (2014): Complete genome sequence of producer of the glycopeptide antibiotic Aculeximycin Kutzneria albida DSM 43870T, a representative of minor genus of Pseudonocardiaceae BMC genomics,15:(1):885
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2647986
    Rückert, C.; Kalinowski, J.; Heide, L.; Apel, A. K. (2014): Draft Genome Sequence of Streptomyces roseochromogenes subsp. oscitans DS 12.976, Producer of the Aminocoumarin Antibiotic Clorobiocin Genome announcements,2:(1): e01147-13.
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2647992
    Flinspach, K.; Rückert, C.; Kalinowski, J.; Heide, L.; Apel, A. K. (2014): Draft Genome Sequence of Streptomyces niveus NCIMB 11891, Producer of the Aminocoumarin Antibiotic Novobiocin Genome announcements,2:(1): e01146-13.
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    Wilson, M. C.; Mori, T.; Rückert, C.; Uria, A. R.; Helf, M. J.; Takada, K.; Gernert, C.; Steffens, U. A. E.; Heycke, N.; Schmitt, S.; Rinke, C.; Helfrich, E. J. N.; Brachmann, A. O.; Gurgui, C.; Wakimoto, T.; Kracht, M.; Crüsemann, M.; Hentschel, U.; Abe, I.; Matsunaga, S.; Kalinowski, J.; Takeyama, H.; Piel, J. (2014): Erratum: Corrigendum: An environmental bacterial taxon with a large and distinct metabolic repertoire Nature,507:(7491): 262-262.
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773
    Jünemann, S.; Prior, K.; Albersmeier, A.; Albaum, S.; Kalinowski, J.; Goesmann, A.; Stoye, J.; Harmsen, D. (2014): GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers PLOS ONE,9:(9):e107014
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    Irla, M.; Neshat, A.; Winkler, A.; Albersmeier, A.; Heggeset, T. M.; Brautaset, T.; Kalinowski, J.; Wendisch, V. F.; Rückert, C. (2014): Complete genome sequence of Bacillus methanolicus MGA3, a thermotolerant amino acid producing methylotroph Journal of Biotechnology,188: 110-111.
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706029 OA
    Kessler, N.; Walter, F.; Persicke, M.; Albaum, S.; Kalinowski, J.; Goesmann, A.; Niehaus, K.; Nattkemper, T. W. (2014): ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis PLoS ONE,9:(11):e113909
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2682811
    Lübke, N. - C.; Wolf, T.; Braun, R.; Rückert, C.; Kalinowski, J. (2014): Vom Schärfesensor zur mikrobiellen Brennstoffzelle BIOspektrum,20:(4): 468-469.
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2679399
    Neshat, A.; Mentz, A.; Rückert, C.; Kalinowski, J. (2014): Transcriptome sequencing revealed the transcriptional organization at ribosome-mediated attenuation sites in Corynebacterium glutamicum and identified a novel attenuator involved in aromatic amino acid biosynthesis Journal of biotechnology,190: 55-63.
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
    Hilker, R.; Stadermann, K. B.; Doppmeier, D.; Kalinowski, J.; Stoye, J.; Straube, J.; Winnebald, J.; Goesmann, A. (2014): ReadXplorer - Visualization and Analysis of Mapped Sequences Bioinformatics,30:(16): 2247-2254.
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    Jünemann, S.; Sedlazeck, F. J.; Prior, K.; Albersmeier, A.; John, U.; Kalinowski, J.; Mellmann, A.; Goesmann, A.; von Haeseler, A.; Stoye, J.; Harmsen, D. (2013): Updating benchtop sequencing performance comparison Nature Biotechnology,31:(4): 294-296.
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    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289494
    Persicke, M.; Plassmeier, J.; Neuweger, H.; Rückert, C.; Pühler, A.; Kalinowski, J. (2011): Size exclusion chromatography-An improved method to harvest Corynebacterium glutamicum cells for the analysis of cytosolic metabolites Journal of Biotechnology,154:(2-3): 171-178.
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    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486400
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    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796753
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    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773130 OA
    Hansmeier, N.; Bartels, F. W.; Ros, R.; Anselmetti, D.; Tauch, A.; Pühler, A.; Kalinowski, J. (2004): Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy J Biotechnol,112:(1-2): 177-193.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [52]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609260
    Dondrup, M.; Goesmann, A.; Bartels, D.; Kalinowski, J.; Krause, L.; Linke, B.; Rupp, O.; Sczyrba, A.; Pühler, A.; Meyer, F. (2003): EMMA: a platform for consistent storage and efficient analysis of microarray data JOURNAL OF BIOTECHNOLOGY,106:(2-3): 135-146.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [51]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612397
    Tauch, A.; Bischoff, N.; Brune, I.; Kalinowski, J. (2003): Insights into the genetic organization of the Corynebacterium diphtheriae erythromycin resistance plasmid pNG2 deduced from its complete nucleotide sequence PLASMID,49:(1): 63-74.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [50]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610269
    Rückert, C.; Pühler, A.; Kalinowski, J. (2003): Genome-wide analysis of the L-methionine biosynthetic pathway in Corynebacterium glutamicum by targeted gene deletion and homologous complementation JOURNAL OF BIOTECHNOLOGY,104:(1-3): 213-228.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [49]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609350
    Watt, S. A.; Patschkowski, T.; Kalinowski, J.; Niehaus, K. (2003): Qualitative and quantitative proteomics by two-dimensional gel electrophoresis, peptide mass fingerprint and a chemically-coded affinity tag (CCAT) Journal of Biotechnology,106:(2-3): 287-300.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [48]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611014
    Brand, S.; Niehaus, K.; Pühler, A.; Kalinowski, J. (2003): Identification and functional analysis of six mycolyltransferase genes of Corynebacterium glutamicum ATCC 13032: the genes cop1, cmt1, and cmt2 can replace each other in the synthesis of trehalose dicorynomycolate, a component of the mycolic acid layer of the cell envelope Archives of Microbiology,180:(1): 33-44.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [47]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610260
    Hartmann, M.; Tauch, A.; Eggeling, L.; Bathe, B.; Mockel, B.; Pühler, A.; Kalinowski, J. (2003): Identification and characterization of the last two unknown genes, dapC and dapF, in the succinylase branch of the L-lysine biosynthesis of Corynebacterium glutamicum J Biotechnol,104:(1-3): 199-211.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [46]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612500
    Puehler, F.; Schwarz, H.; Waidner, B.; Kalinowski, J.; Kaspers, B.; Bereswill, S.; Staeheli, P. (2003): An interferon-gamma-binding protein of novel structure encoded by the fowlpox virus JOURNAL OF BIOLOGICAL CHEMISTRY,278:(9): 6905-6911.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [45]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610274
    McHardy, A. C.; Tauch, A.; Rückert, C.; Pühler, A.; Kalinowski, J. (2003): Genome-based analysis of biosynthetic aminotransferase genes of Corynebacterium glutamicum J Biotechnol,104:(1-3): 229-240.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [44]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880 OA
    Meyer, F.; Goesmann, A.; McHardy, A. C.; Bartels, D.; Bekel, T.; Clausen, J.; Kalinowski, J.; Linke, B.; Rupp, O.; Giegerich, R.; Pühler, A. (2003): GenDB - an open source genome annotation system for prokaryote genomes Nucleic Acids Research,31:(8): 2187-2195.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [43]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610254
    Tauch, A.; Pühler, A.; Kalinowski, J.; Thierbach, G. (2003): Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics JOURNAL OF BIOTECHNOLOGY,104:(1-3): 27-40.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [42]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611276
    Rey, D. A.; Pühler, A.; Kalinowski, J. (2003): The putative transcriptional repressor McbR, member of the TetR-family, is involved in the regulation of the metabolic network directing the synthesis of sulfur containing amino acids in Corynebacterium glutamicum JOURNAL OF BIOTECHNOLOGY,103:(1): 51-65.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [41]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609339
    Hüser, A. T.; Becker, A.; Brune, I.; Dondrup, M.; Kalinowski, J.; Plassmeier, J.; Pühler, A.; Wiegräbe, I.; Tauch, A. (2003): Development of a Corynebacterium glutamicum DNA microarray and validation by genome-wide expression profiling during growth with propionate as carbon source JOURNAL OF BIOTECHNOLOGY,106:(2-3): 269-286.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [40]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1895035
    Kalinowski, J.; Bathe, B.; Bartels, D.; Bischoff, N.; Bott, M.; Burkovski, A.; Dusch, N.; Eggeling, L.; Eikmanns, B. J.; Gaigalat, L.; Goesmann, A.; Hartmann, M.; Huthmacher, K.; Kramer, R.; Linke, B.; McHardy, A. C.; Meyer, F.; Mockel, B.; Pfefferle, W.; Pühler, A.; Rey, D. A.; Rückert, C.; Rupp, O.; Sahm, H.; Wendisch, V. F.; Wiegrabe, I.; Tauch, A. (2003): The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins Journal of Biotechnology,104:(1-3): 5-25.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [39]
    2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613421
    Tauch, A.; Götker, S.; Pühler, A.; Kalinowski, J.; Thierbach, G. (2002): The 27.8-kb R-plasmid pTET3 from Corynebacterium glutamicum encodes the aminoglycoside adenyltransferase gene cassette aadA9 and the regulated tetracycline efflux system Tet 33 flanked by active copies of the widespread insertion sequence IS6100 Plasmid,48:(2): 117-129.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [38]
    2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613598
    Tauch, A.; Kirchner, O.; Löffler, B.; Götker, S.; Pühler, A.; Kalinowski, J. (2002): Efficient electrotransformation of Corynebacterium diphtheriae with a mini-replicon derived from the Corynebacterium glutamicum plasmid pGA1 CURRENT MICROBIOLOGY,45:(5): 362-367.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [37]
    2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1614539
    Claes, W. A.; Pühler, A.; Kalinowski, J. (2002): Identification of two prpDBC gene clusters in Corynebacterium glutamicum and their involvement in propionate degradation via the 2-methylcitrate cycle J Bacteriol,184:(10): 2728-2739.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [36]
    2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615366
    Goesmann, A.; Haubrock, M.; Meyer, F.; Kalinowski, J.; Giegerich, R. (2002): PathFinder: reconstruction and dynamic visualization of metabolic pathways BIOINFORMATICS,18:(1): 124-129.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [35]
    2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613526
    Tauch, A.; Götker, S.; Pühler, A.; Kalinowski, J.; Thierbach, G. (2002): The alanine racemase gene alr is an alternative to antibiotic resistance genes in cloning systems for industrial Corynebacterium glutamicum strains JOURNAL OF BIOTECHNOLOGY,99:(1): 79-91.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [34]
    2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1616804
    Tauch, A.; Wehmeier, L.; Gotker, S.; Pühler, A.; Kalinowski, J. (2001): Relaxed rrn expression and amino acid requirement of a Corynebacterium glutamicum rel mutant defective in (p)ppGpp metabolism FEMS Microbiol Lett,201:(1): 53-58.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [33]
    2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1616981
    Hermann, T.; Pfefferle, W.; Baumann, C.; Busker, E.; Schaffer, S.; Bott, M.; Sahm, H.; Dusch, N.; Kalinowski, J.; Pühler, A.; Bendt, A. K.; Kramer, R.; Burkovski, A. (2001): Proteome analysis of Corynebacterium glutamicum ELECTROPHORESIS,22:(9): 1712-1723.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [32]
    2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1617736
    Wehmeier, L.; Brockmann-Gretza, O.; Pisabarro, A.; Tauch, A.; Pühler, A.; Martin, J. F.; Kalinowski, J. (2001): A Corynebacterium glutamicum mutant with a defined deletion within the rpIK gene is impaired in (p)ppGpp accumulation upon amino acid starvation Microbiology,147: 691-700.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [31]
    2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1620384
    Tauch, A.; Krieft, S.; Kalinowski, J.; Pühler, A. (2000): The 51,409-bp R-plasmid pTP10 from the multiresistant clinical isolate Corynebacterium striatum M82B is composed of DNA segments initially identified in soil bacteria and in plant, animal, and human pathogens MOLECULAR AND GENERAL GENETICS,263:(1): 1-11.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [30]
    2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1618501
    Tauch, A.; Pühler, A.; Kalinowski, J.; Thierbach, G. (2000): TetZ, a new tetracycline resistance determinant discovered in gram-positive bacteria, shows high homology to gram-negative regulated efflux systems PLASMID,44:(3): 285-291.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [29]
    1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1621449
    Elischewski, F.; Pühler, A.; Kalinowski, J. (1999): Pantothenate production in Escherichia coli K12 by enhanced expression of the panE gene encoding ketopantoate reductase JOURNAL OF BIOTECHNOLOGY,75:(2-3): 135-146.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [28]
    1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1623329
    Tauch, A.; Krieft, S.; Pühler, A.; Kalinowski, J. (1999): The tetAB genes of the Corynebacterium striatum R-plasmid pTP10 encode an ABC transporter and confer tetracycline, oxytetracycline and oxacillin resistance in Corynebacterium glutamicum FEMS Microbiol Lett,173:(1): 203-209.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [27]
    1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1623284
    Dusch, N.; Pühler, A.; Kalinowski, J. (1999): Expression of the Corynebacterium glutamicum panD gene encoding L-aspartate-alpha-decarboxylase leads to pantothenate overproduction in Escherichia coli Appl Environ Microbiol,65:(4): 1530-1539.
    PUB | WoS | PubMed | Europe PMC | GenBank
     
  • [26]
    1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1621156
    Quast, K.; Bathe, B.; Pühler, A.; Kalinowski, J. (1999): The Corynebacterium glutamicum insertion sequence ISCg2 prefers conserved target sequences located adjacent to genes involved in aspartate and glutamate metabolism Mol Gen Genet,262:(3): 568-578.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [25]
    1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1626331
    Götting, C.; Thierbach, G.; Pühler, A.; Kalinowski, J. (1998): Versatile low-copy-number plasmids for temperature-inducible overexpression of bacterial genes in Escherichia coli BIOTECHNIQUES,24:(3): 362-+.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [24]
    1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1904807
    Peters-Wendisch, P.; Kreutzer, C.; Kalinowski, J.; Pátek, M.; Sahm, H.; Eikmanns, B. J. (1998): Pyruvate carboxylase from Corynebacterium glutamicum: characterization, expression and inactivation of the pyc gene. Microbiology-Sgm,144:(4): 915-927.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [23]
    1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1625135
    Wehmeier, L.; Schafer, A.; Burkovski, A.; Kramer, R.; Mechold, U.; Malke, H.; Pühler, A.; Kalinowski, J. (1998): The role of the Corynebacterium glutamicum rel gene in (p)ppGpp metabolism Microbiology,144:(7): 1853-1862.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [22]
    1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1624721
    Tauch, A.; Zheng, Z. X.; Pühler, A.; Kalinowski, J. (1998): Corynebacterium striatum chloramphenicol resistance transposon Tn5564: Genetic organization and transposition in Corynebacterium glutamicum Plasmid,40:(2): 126-139.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [21]
    1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1625704
    Tauch, A.; Hermann, T.; Burkovski, A.; Kramer, R.; Pühler, A.; Kalinowski, J. (1998): Isoleucine uptake in Corynebacterium glutamicum ATCC 13032 is directed by the brnQ gene product ARCHIVES OF MICROBIOLOGY,169:(4): 303-312.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [20]
    1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1626635
    Schäfer, A.; Tauch, A.; Droste, N.; Pühler, A.; Kalinowski, J. (1997): The Corynebacterium glutamicum cglIM gene encoding a 5-cytosine methyltransferase enzyme confers a specific DNA methylation pattern in an McrBC-deficient Escherichia coli strain Gene,203:(2): 95-101.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [19]
    1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1637471
    Jäger, W.; Kalinowski, J.; Pühler, A. (1997): A Corynebacterium glutamicum gene conferring multidrug resistance in the heterologous host Escherichia coli J Bacteriol,179:(7): 2449-2451.
    PUB | WoS | PubMed | Europe PMC | GenBank
     
  • [18]
    1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1638621
    Jäger, W.; Peters-Wendisch, P.; Kalinowski, J.; Pühler, A. (1996): A Corynebacterium glutamicum gene encoding a two-domain protein similar to biotin carboxylases and biotin-carboxyl-carrier proteins Arch Microbiol,166:(2): 76-82.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [17]
    1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1637976
    Fernandez-Gonzalez, C.; Gil, J. A.; Mateos, L. M.; Schwarzer, A.; Schafer, A.; Kalinowski, J.; Pühler, A.; Martin, J. F. (1996): Construction of L-lysine-overproducing strains of Brevibacterium lactofermentum by targeted disruption of the hom and thrB genes APPLIED MICROBIOLOGY AND BIOTECHNOLOGY,46:(5-6): 554-558.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [16]
    1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1638387
    Bathe, B.; Kalinowski, J.; Pühler, A. (1996): A physical and genetic map of the Corynebacterium glutamicum ATCC 13032 chromosome MOLECULAR & GENERAL GENETICS,252:(3): 255-265.
    PUB | WoS | PubMed | Europe PMC
     
  • [15]
    1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1638415
    Mateos, L. M.; Schäfer, A.; Kalinowski, J.; Martin, J. F.; Pühler, A. (1996): Integration of narrow-host-range vectors from Escherichia coli into the genomes of amino acid-producing corynebacteria after intergeneric conjugation JOURNAL OF BACTERIOLOGY,178:(19): 5768-5775.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [14]
    1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1641658
    Jäger, W.; Schäfer, A.; Kalinowski, J.; Pühler, A. (1995): Isolation of insertion elements from gram-positive Brevibacterium, Corynebacterium and Rhodococcus strains using the Bacillus subtilis sacB gene as a positive selection marker FEMS MICROBIOLOGY LETTERS,126:(1): 1-6.
    PUB | WoS | PubMed | Europe PMC
     
  • [13]
    1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1640693
    Tauch, A.; Kassing, F.; Kalinowski, J.; Pühler, A. (1995): The erythromycin resistance gene of the Corynebacterium xerosis R-plasmid pTP10 also carrying chloramphenicol, kanamycin, and tetracycline resistances is capable of transposition in Corynebacterium glutamicum PLASMID,33:(3): 168-179.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [12]
    1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1639972
    Tauch, A.; KASSING, F.; Kalinowski, J.; Pühler, A. (1995): The Corynebacterium xerosis composite transposon Tn5432 consists of two identical insertion sequences, designated IS1249, flanking the erythromycin resistance gene ermCX Plasmid,34:(2): 119-131.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [11]
    1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1644393
    Schäfer, A.; Kalinowski, J.; Pühler, A. (1994): Increased fertility of Corynebacterium glutamicum recipients in intergeneric matings with Escherichia coli after stress exposure APPLIED AND ENVIRONMENTAL MICROBIOLOGY,60:(2): 756-759.
    PUB | WoS | PubMed | Europe PMC
     
  • [10]
    1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1642272
    Tauch, A.; Kirchner, O.; Wehmeier, L.; Kalinowski, J.; Pühler, A. (1994): Corynebacterium glutamicum DNA is subjected to methylation-restriction in Escherichia coli FEMS MICROBIOLOGY LETTERS,123:(3): 343-347.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [9]
    1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1643046
    SCHAEFER, A.; Tauch, A.; JAEGER, W.; Kalinowski, J.; THIERBACH, G.; Pühler, A. (1994): Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum Gene,145:(1): 69-73.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [8]
    1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1642103
    Schäfer, A.; Schwarzer, A.; Kalinowski, J.; Pühler, A. (1994): Cloning and characterization of a DNA region encoding a stress-sensitive restriction system from Corynebacterium glutamicum ATCC 13032 and analysis of its role in intergeneric conjugation with Escherichia coli J Bacteriol,176:(23): 7309-7319.
    PUB | WoS | PubMed | Europe PMC | GenBank
     
  • [7]
    1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1649702
    Schrumpf, B.; Schwarzer, A.; Kalinowski, J.; Pühler, A.; Eggeling, L.; Sahm, H. (1991): A functionally split pathway for lysine synthesis in Corynebacterium glutamicium Journal of Bacteriology,173:(14): 4510-4516.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [6]
    1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1649978
    Kalinowski, J.; Cremer, J.; Bachmann, B.; Eggeling, L.; Sahm, H.; Pühler, A. (1991): Genetic and biochemical analysis of the aspartokinase from Corynebacterium glutamicum MOLECULAR MICROBIOLOGY,5:(5): 1197-1204.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [5]
    1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1648831
    Seep-Feldhaus, A. H.; Kalinowski, J.; Pühler, A. (1991): Molecular analysis of the Corynebacterium glutamicum lysl gene involved in lysine uptake MOLECULAR MICROBIOLOGY,5:(12): 2995-3005.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [4]
    1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1629917
    Kalinowski, J.; Bachmann, B.; Thierbach, G.; Pühler, A. (1990): Aspartokinase genes lysC alpha and lysC beta overlap and are adjacent to the aspartate beta-semialdehyde dehydrogenase gene asd in Corynebacterium glutamicum MOLECULAR & GENERAL GENETICS,224:(3): 317-324.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [3]
    1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1652001
    Thierbach, G.; Kalinowski, J.; Bachmann, B.; Pühler, A. (1990): Cloning of a DNA fragment from Corynebacterium glutamicum conferring aminoethyl cysteine resistance and feedback resistance to aspartokinase. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY,32:(4): 443-448.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [2]
    1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1651883
    Schäfer, A.; Kalinowski, J.; Simon, R.; Seep-Feldhaus, A. H.; Pühler, A. (1990): High-frequency conjugal plasmid transfer from gram-negative Escherichia coli to various gram-positive coryneform bacteria. JOURNAL OF BACTERIOLOGY,172:(3): 1663-1666.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [1]
    1989 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1652907
    PRIEFER, U. B.; Kalinowski, J.; RUGER, B.; HEUMANN, W.; Pühler, A. (1989): ISR1, A TRANSPOSABLE DNA-SEQUENCE RESIDENT IN RHIZOBIUM CLASS-IV STRAINS, SHOWS STRUCTURAL CHARACTERISTICS OF CLASSICAL INSERTION ELEMENTS PLASMID,21:(2): 120-128.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     

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