Robert Giegerich
PEVZ-ID
111 Publikationen
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901460B. Löwes, et al., “The BRaliBase Dent – a Tale of Benchmark Design and Interpretation”, Briefings in Bioinformatics, vol. 18, 2017, pp. 306-311.PUB | DOI | WoS | PubMed | Europe PMC
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2733607J. Reinkensmeier and R. Giegerich, “Thermodynamic matchers for the construction of the cuckoo RNA family”, RNA Biology, vol. 12, 2015, pp. 197-207.PUB | DOI | WoS | PubMed | Europe PMC
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2700599S. Janssen and R. Giegerich, “The RNA shapes studio”, Bioinformatics, vol. 31, 2014, pp. 423-425.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699802O. Torres-Quesada, et al., “Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti”, RNA Biology, vol. 11, 2014, pp. 563-579.PUB | DOI | WoS | PubMed | Europe PMC
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699792A. Becker, et al., “Riboregulation in plant-associated alpha-proteobacteria”, RNA Biology, vol. 11, 2014, pp. 550-562.PUB | DOI | WoS | PubMed | Europe PMC
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2014 | Konferenzband | Veröffentlicht | PUB-ID: 2901695R. Giegerich, R. Hofestädt, and T.W. Nattkemper, eds., “German Conference on Bioinformatics 2014”, GI-Edition: lecture notes in informatics, vol. 235, 2014.PUB
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2584661J.-P. Schlueter, et al., “Global mapping of transcription start sites and promoter motifs in the symbiotic a-proteobacterium Sinorhizobium meliloti 1021”, Bmc Genomics, vol. 14, 2013, : 156.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2551798G. Sauthoff, et al., “Bellman's GAP -- a Language and Compiler for Dynamic Programming in Sequence Analysis”, Bioinformatics, vol. 29, 2013, pp. 551-560.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645192A. Gillett, et al., “A Silent Exonic SNP in Kdm3a Affects Nucleic Acids Structure but Does Not Regulate Experimental Autoimmune Encephalomyelitis”, Plos One, vol. 8, 2013, : e81912.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901275B. Löwes and R. Giegerich, “Avoiding Ambiguity and Assessing Uniqueness in Minisatellite Alignment”, German Conference on Bioinformatics 2013, T. Beißbarth, et al., eds., OpenAccess Series in Informatics (OASIcs), vol. 34, Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013, pp.110-124.PUB | DOI
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2547307M. El-Kalioby, et al., “Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package”, BMC Bioinformatics, vol. 13, 2012, : S22.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Sammelwerksbeitrag | PUB-ID: 2439665S. Janssen and R. Giegerich, “Abstract Shape Analysis of RNA”, RNA Bioinformatics t.b.a., J. Gorodkin and Z. Weinberg, eds., 2012, pp.1-35.PUB
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2410526S. Janssen, et al., “Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction”, BMC Bioinformatics, vol. 12, 2011, : 429.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427226J. Reinkensmeier, et al., “Conservation and Occurrence of Trans-Encoded sRNAs in the Rhizobiales”, GENES, vol. 2, 2011, pp. 925-956.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383357R. Giegerich and G. Sauthoff, “Yield grammar analysis in the Bellman's GAP compiler”, Proceedings of the Eleventh Workshop on Language Descriptions, Tools and Applications (ACM), 2011.PUB
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2310489G. Sauthoff, S. Janssen, and R. Giegerich, “Bellman's GAP: a declarative language for dynamic programming”, Proceedings of the 13th international ACM SIGPLAN symposium on Principles and practices of declarative programming, New York, NY, USA: ACM, 2011, pp.29-40.PUB | DOI | Download (ext.)
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003355R. Giegerich and C. Hoener Zu Siederdissen, “Semantics and Ambiguity of Stochastic RNA Family Models”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 8, 2011, pp. 499-516.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578B. Linke, R. Giegerich, and A. Goesmann, “Conveyor: a workflow engine for bioinformatic analyses”, Bioinformatics, vol. 27, 2011, pp. 903-911.PUB | DOI | WoS | PubMed | Europe PMC
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1894008C. Theis, S. Janssen, and R. Giegerich, “Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs”, Algorithms in Bioinformatics. 10th international workshop (WABI 2010), proceedings, V. Moulton and M. Singh, eds., Lecture Notes in Bioinformatics, vol. 6293, Berlin: Springer, 2010, pp.52-64.PUB | Datei | DOI
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589458M. Beckstette, et al., “Significant speedup of database searches with HMMs by search space reduction with PSSM family models”, Bioinformatics, vol. 25, 2009, pp. 3251-3258.PUB | DOI | WoS | PubMed | Europe PMC
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383365M. Abouelhoda, et al., “Alignment of minisatellite maps based on run-length encoding scheme”, Journal of Bioinformatics and Computational Biology, vol. 7, 2009, pp. 287-308.PUB | DOI | PubMed | Europe PMC
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383411J. Reeder and R. Giegerich, “RNA secondary structure analysis using the RNAshapes package”, Current Protocols in Bioinformatics, vol. 26, 2009, pp. Unit12.8.PUB | DOI | PubMed | Europe PMC
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2009 | Konferenzbeitrag | Entwurf | PUB-ID: 2383425P. Steffen, R. Giegerich, and M. Giraud, “GPU Parallization of Algebraic Dynamic Programming”, Proceedings PPAM, Unpublished.PUB
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634374R. Homann, et al., “mkESA: enhanced suffix array construction tool”, Bioinformatics, vol. 25, 2009, pp. 1084-1085.PUB | DOI | WoS | PubMed | Europe PMC
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383382M.I. Abouelhoda, et al., “Alignment of Minisatellite Maps: A Minimum Spanning Tree based Approach”, Proceedings of the 6th Asia-Pacific Bioinformatics Conference, Series on Advances in Bioinformatics and Computational Biology, 6, 2008, pp.261-272.PUB | DOI
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588303A. Sczyrba, S. Konermann, and R. Giegerich, “Two interactive bioinformatics courses at the bielefeld university bioinformatics server”, BRIEFINGS IN BIOINFORMATICS, vol. 9, 2008, pp. 243-249.PUB | DOI | WoS | PubMed | Europe PMC
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588308R. Giegerich, et al., “The BREW workshop series: a stimulating experience in PhD education”, Briefings in Bioinformatics, vol. 9, 2008, pp. 250-253.PUB | DOI | WoS | PubMed | Europe PMC
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893917S. Janssen, J. Reeder, and R. Giegerich, “Shape based indexing for faster search of RNA family databases”, BMC Bioinformatics, vol. 9, 2008, pp. 131.PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1593132J. Reeder, J. Reeder, and R. Giegerich, “Locomotif: from graphical motif description to RNA motif search”, Bioinformatics, Bioinformatics, vol. 23, OXFORD UNIV PRESS, 2007, pp.I392-I400.PUB | DOI | WoS | PubMed | Europe PMC
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383428C. Brabrand, R. Giegerich, and A. Moeller, “Analyzing Ambiguity of Context-Free Grammars”, Implementation and Application of Automata. 12th International Conference, CIAA 2007, July 16-18, 2007, Revised Selected Papers, J. Holub and J. Žďárek, eds., Lecture Notes in Computer Science, 4783, Springer, 2007.PUB | DOI
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383462S. Hartmeier, J. Krüger, and R. Giegerich, “Webservices and Workflows on the Bielefeld Bioinformatics Server: Practices and Problems”, Proceedings, 2007.PUB
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597065M. Baake, U. Grimm, and R. Giegerich, “Surprises in approximating Levenshtein distances”, JOURNAL OF THEORETICAL BIOLOGY, vol. 243, 2006, pp. 279-282.PUB | DOI | WoS | PubMed | Europe PMC
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383464R. Giegerich and P. Steffen, “Challenges in the Compilation of a Domain Specific Language for Dynamic Programming”, Proceedings of te 2006 ACM Symposium on Applied Computing, 2006.PUB
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1902179W. Gerlach and R. Giegerich, “GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing.”, Bioinformatics, vol. 22, 2006, pp. 762-764.PUB | DOI | WoS | PubMed | Europe PMC
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946336T. Höchsmann, M. Höchsmann, and R. Giegerich, “Thermodynamic matchers: strengthening the significance of RNA folding energies”, Comput Syst Bioinformatics Conf, 2006, pp. 111-121.PUB | DOI | PubMed | Europe PMC
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383518J. Reeder and R. Giegerich, “A graphical programming system for molecular motif search”, Proceedings of the 5th International Conference on Generative Programming and Component Engineering, ACM Press, 2006, pp.131-140.PUB
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600421P. Steffen, et al., “RNAshapes: an integrated RNA analysis package based on abstract shapes”, Bioinformatics, vol. 22, 2006, pp. 500-503.PUB | DOI | WoS | PubMed | Europe PMC
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1598807J. Reeder, et al., “Beyond Mfold: recent advances in RNA bioinformatics”, Journal of Biotechnology, JOURNAL OF BIOTECHNOLOGY, vol. 124, ELSEVIER SCIENCE BV, 2006, pp.41-55.PUB | DOI | WoS | PubMed | Europe PMC
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602431J. Reeder and R. Giegerich, “Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction”, BIOINFORMATICS, vol. 21, 2005, pp. 3516-3523.PUB | DOI | WoS | PubMed | Europe PMC
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2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383561A. Sczyrba, et al., “Identification of 10,500 Xenopus laevis Full Length Clones through EST Clustering and Sequence Analysis”, German Conference on Bioinformatics 2004 : GCB 2004, October 4 - 6, 2004, Bielefeld, Germany , R. Giegerich and J. Stoye, eds., GI-Edition / Proceedings, vol. 53, Bonn: Gesellschaft für Informatik, 2004, pp.6-7.PUB
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2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383543M. Beckstette, et al., “PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays”, Proceedings of the German Conference on Bioinformatics, Lecture Notes in Informatics: GI, 2004, pp.53-64.PUB
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2004 | Konferenzband | Veröffentlicht | PUB-ID: 1918823R. Giegerich and J. Stoye, eds., “Proceedings of the German Conference on Bioinformatics, GCB 2004”, Lecture Notes in Informatics, vol. P-53, 2004, pp. 234.PUB
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606377M. Rehmsmeier, et al., “Fast and effective prediction of microRNA/target duplexes”, RNA-A PUBLICATION OF THE RNA SOCIETY, vol. 10, 2004, pp. 1507-1517.PUB | DOI | WoS | PubMed | Europe PMC
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606822J.V. Choudhuri, et al., “GenAlyzer: interactive visualization of sequence similarities between entire genomes”, BIOINFORMATICS, vol. 20, 2004, pp. 1964-1965.PUB | DOI | WoS | PubMed | Europe PMC
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607419B. Voss, C. Meyer, and R. Giegerich, “Evaluating the predictability of conformational switching in RNA”, Bioinformatics, vol. 20, 2004, pp. 1573-1582.PUB | DOI | WoS | PubMed | Europe PMC
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600293M. Höchsmann, B. Voss, and R. Giegerich, “Pure multiple RNA secondary structure alignments: A progressive profile approach”, IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATIOCS, vol. 1, 2004, pp. 53-62.PUB | DOI | WoS | PubMed | Europe PMC
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773844A. Sczyrba, et al., “RNA-related tools on the Bielefeld Bioinformatics Server”, Nucleic Acids Research, vol. 31, 2003, pp. 3767-3770.PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383602A. Dress, et al., “Fibonacci-Cayley-numbers and Repetition Pattern in Genomic DNA”, Annals of Combinatorics, 2003, pp. 259-279.PUB
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1918949R. Giegerich and J. Stoye, “Finden, fast ohne zu suchen: Indexstrukturen in der Bioinformatik”, Forschung an der Universität Bielefeld, vol. 26, 2003, pp. 63-68.PUB
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1666680M. Höchsmann, et al., “Local similarity in RNA secondary structures.”, Proc IEEE Comput Soc Bioinform Conf, vol. 2, 2003, pp. 159-168.PUB | PubMed | Europe PMC
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2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383608R. Giegerich and C. Meyer, “Algebraic Dynamic Programming”, Algebraic Methodology and Software Technology, Springer, 2002, pp.349-364.PUB
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1614870C. Meyer and R. Giegerich, “Matching and significance evaluation of combined sequence-structure motifs in RNA”, ZEITSCHRIFT FÜR PHYSIKALISCHE CHEMIE-INTERNATIONAL JOURNAL OF RESEARCH IN PHYSICAL CHEMISTRY & CHEMICAL PHYSICS, vol. 216, 2002, pp. 193-216.PUB | DOI | WoS
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615366A. Goesmann, et al., “PathFinder: reconstruction and dynamic visualization of metabolic pathways”, BIOINFORMATICS, vol. 18, 2002, pp. 124-129.PUB | DOI | WoS | PubMed | Europe PMC
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2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1612812R. Giegerich and P. Steffen, “Implementing algebraic dynamic programming in the functional and the imperative programming paradigm”, MATHEMATICS OF PROGRAM CONSTRUCTION, E. Boiten, ed., Lecture Notes in Computer Science, vol. 2386, Berlin ; Heidelberg ; New York ; Barcelona ; Hong Kong ; London ; Milan ; Paris ; Tokyo: SPRINGER-VERLAG BERLIN, 2002, pp.1-20.PUB | WoS
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2001 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383615D. Evers and R. Giegerich, “Reducing the Conformation Space in RNA Structure Prediction”, Proceedings of the German Conference on Bioinformatics, 2001, pp.118-124.PUB
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2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615572G. Fuellen, J.W. Wägele, and R. Giegerich, “Minimum conflict: a divide-and-conquer approach to phylogeny estimation”, BIOINFORMATICS, vol. 17, 2001, pp. 1168-1178.PUB | DOI | WoS | PubMed | Europe PMC
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2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383618R. Giegerich and D. Evers, “Bioinformatik: Jäger, Sammler und Forscher im Daten-Dschungel der Molekularbiologie”, BIOforum, vol. 1-2, 2000, pp. 30-32.PUB
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2000 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1618572R. Giegerich, “Explaining and controlling ambiguity in dynamic programming”, Combinatorial Pattern Matching. 11th Annual Symposium CPM 2000, Proceedings, R. Giancarlo and D. Sankoff, eds., Lecture Notes in Computer Science, vol. 1848, Berlin: Springer, 2000, pp.46-59.PUB | WoS
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2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1618574R. Giegerich, “A systematic approach to dynamic programming in bioinformatics”, BIOINFORMATICS, vol. 16, 2000, pp. 665-677.PUB | DOI | WoS | PubMed | Europe PMC
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2000 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1918988S. Kurtz, et al., “Computation and Visualization of Degenerate Repeats in Complete Genomes”, Proc. of ISMB 2000, 2000, pp.228-238.PUB | PubMed | Europe PMC
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1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1947682R. Giegerich, D. Haase, and M. Rehmsmeier, “Prediction and visualization of structural switches in RNA”, Pac Symp Biocomput, 1999, pp. 126-137.PUB | PubMed | Europe PMC
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1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1623374D.J. Evers and R. Giegerich, “RNA movies: visualizing RNA secondary structure spaces”, BIOINFORMATICS, vol. 15, 1999, pp. 32-37.PUB | DOI | WoS | PubMed | Europe PMC
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1998 | Konferenzbeitrag | PUB-ID: 1883741D. Lorenz and R. Giegerich, “ViSeL: An interactive Virtual Laboratory for DNA Sequencing”, Tagungsband zum Workshop "Multimedia-Systeme" im Rahmen der GI-Jahrestagung 1998, Magdeburg: 1998, pp.53-65.PUB
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1997 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383634G. Fuellen and R. Giegerich, “International, interdisziplinär und interaaktiv: Der VSNS-Kurs über BioComputing”, Proceedings: Virtueller Campus, 1997, pp.77-89.PUB
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1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1947921R. Giegerich, F. Meyer, and C. Schleiermacher, “GeneFisher--software support for the detection of postulated genes”, Proc Int Conf Intell Syst Mol Biol, vol. 4, 1996, pp. 68-77.PUB | PubMed | Europe PMC
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1995 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1639513B. Bütow, et al., “A new calculus for semantic matching”, Programming languages: implementations, logics and programs. 7th international symposium ; proceedings, M. Hermenegildo and S.D. Swierstra, eds., Lecture Notes in Computer Science, vol. 982, Berlin: Springer, 1995, pp.81-96.PUB | WoS
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1992 | Report | PUB-ID: 2383632R. Giegerich, Embedding Sequence Analysis in the Functional Programming Paradigm - A Feasability Study, Report No. 8, Universität Bielefeld: Technische Fakultät, 1992.PUB
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1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383627R. Giegerich and E. Ohlebusch, “An Implicit Representation of Infinite Sequences of Terms”, Bulletin of the EATCS, vol. 43, 1991, pp. 174-182.PUB
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