Robert Giegerich
PEVZ-ID
111 Publikationen
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901460The BRaliBase Dent – a Tale of Benchmark Design and InterpretationPUB | DOI | WoS | PubMed | Europe PMC
Löwes, Benedikt, The BRaliBase Dent – a Tale of Benchmark Design and Interpretation. Briefings in Bioinformatics 18 (2). , 2017 -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903044Integrating Pareto Optimization into Dynamic ProgrammingPUB | DOI | WoS
Gatter, Thomas, Integrating Pareto Optimization into Dynamic Programming. ALGORITHMS 9 (1). , 2016 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764888Ambivalent covariance modelsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Janssen, Stefan, Ambivalent covariance models. BMC Bioinformatics 16 (1). , 2015 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2763075Pareto optimization in algebraic dynamic programmingPUB | PDF | DOI | WoS | PubMed | Europe PMC
Saule, Cedric, Pareto optimization in algebraic dynamic programming. Algorithms for Molecular Biology 10 (1). , 2015 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2733607Thermodynamic matchers for the construction of the cuckoo RNA familyPUB | DOI | WoS | PubMed | Europe PMC
Reinkensmeier, Jan, Thermodynamic matchers for the construction of the cuckoo RNA family. RNA Biology 12 (2). , 2015 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905757Modeling Dynamic Programming Problems over Sequences and Trees with Inverse Coupled Rewrite SystemsPUB | DOI
Giegerich, Robert, Modeling Dynamic Programming Problems over Sequences and Trees with Inverse Coupled Rewrite Systems. Algorithms 7 (1). , 2014 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2700599The RNA shapes studioPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Janssen, Stefan, The RNA shapes studio. Bioinformatics 31 (3). , 2014 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699802Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium melilotiPUB | DOI | WoS | PubMed | Europe PMC
Torres-Quesada, Omar, Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti. RNA Biology 11 (5). , 2014 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2681698Yield grammar analysis and product optimization in a domain-specific language for dynamic programmingPUB | DOI | WoS
Sauthoff, Georg, Yield grammar analysis and product optimization in a domain-specific language for dynamic programming. Science of Computer Programming 87 (). , 2014 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699792Riboregulation in plant-associated alpha-proteobacteriaPUB | DOI | WoS | PubMed | Europe PMC
Becker, Anke, Riboregulation in plant-associated alpha-proteobacteria. RNA Biology 11 (5). , 2014 -
2014 | Konferenzband | Veröffentlicht | PUB-ID: 2901695German Conference on Bioinformatics 2014PUB
Giegerich, Robert, German Conference on Bioinformatics 2014. 235 (). Bonn, 2014 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2584661Global mapping of transcription start sites and promoter motifs in the symbiotic a-proteobacterium Sinorhizobium meliloti 1021PUB | DOI | WoS | PubMed | Europe PMC
Schlueter, Jan-Philip, Global mapping of transcription start sites and promoter motifs in the symbiotic a-proteobacterium Sinorhizobium meliloti 1021. Bmc Genomics 14 (1). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2551798Bellman's GAP -- a Language and Compiler for Dynamic Programming in Sequence AnalysisPUB | DOI | WoS | PubMed | Europe PMC
Sauthoff, Georg, Bellman's GAP -- a Language and Compiler for Dynamic Programming in Sequence Analysis. Bioinformatics 29 (5). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645192A Silent Exonic SNP in Kdm3a Affects Nucleic Acids Structure but Does Not Regulate Experimental Autoimmune EncephalomyelitisPUB | DOI | WoS | PubMed | Europe PMC
Gillett, Alan, A Silent Exonic SNP in Kdm3a Affects Nucleic Acids Structure but Does Not Regulate Experimental Autoimmune Encephalomyelitis. Plos One 8 (12). , 2013 -
2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901275Avoiding Ambiguity and Assessing Uniqueness in Minisatellite AlignmentPUB | DOI
Löwes, Benedikt, Avoiding Ambiguity and Assessing Uniqueness in Minisatellite Alignment. German Conference on Bioinformatics 2013 34 (). Dagstuhl, Germany, 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2607289Forest alignment with affine gaps and anchors, applied in RNA structure comparisonPUB | DOI | WoS
Schirmer, Stefanie, Forest alignment with affine gaps and anchors, applied in RNA structure comparison. Theoretical Computer Science 483 (). , 2013 -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2547307Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC packagePUB | DOI | WoS | PubMed | Europe PMC
El-Kalioby, Mohamed, Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package. BMC Bioinformatics 13 (Suppl 17). , 2012 -
2012 | Sammelwerksbeitrag | PUB-ID: 2439665Abstract Shape Analysis of RNAPUB
Janssen, Stefan, Abstract Shape Analysis of RNA. RNA Bioinformatics t.b.a. (). , 2012 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2410526Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure predictionPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Janssen, Stefan, Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction. BMC Bioinformatics 12 (1). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427226Conservation and Occurrence of Trans-Encoded sRNAs in the RhizobialesPUB | DOI | WoS | PubMed | Europe PMC
Reinkensmeier, Jan, Conservation and Occurrence of Trans-Encoded sRNAs in the Rhizobiales. GENES 2 (4). , 2011 -
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383357Yield grammar analysis in the Bellman's GAP compilerPUB
Giegerich, Robert, Yield grammar analysis in the Bellman's GAP compiler. Proceedings of the Eleventh Workshop on Language Descriptions, Tools and Applications (ACM) (). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383363Forest Alignment with Affine Gaps and AnchorsPUB | DOI
Schirmer, Stefanie, Forest Alignment with Affine Gaps and Anchors. Combinatorial Pattern Matching (). Berlin, Heidelberg, 2011 -
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2310489Bellman's GAP: a declarative language for dynamic programmingPUB | DOI | Download (ext.)
Sauthoff, Georg, Bellman's GAP: a declarative language for dynamic programming. Proceedings of the 13th international ACM SIGPLAN symposium on Principles and practices of declarative programming (). New York, NY, USA, 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003355Semantics and Ambiguity of Stochastic RNA Family ModelsPUB | DOI | WoS | PubMed | Europe PMC
Giegerich, Robert, Semantics and Ambiguity of Stochastic RNA Family Models. IEEE/ACM Transactions on Computational Biology and Bioinformatics 8 (2). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578Conveyor: a workflow engine for bioinformatic analysesPUB | DOI | WoS | PubMed | Europe PMC
Linke, Burkhard, Conveyor: a workflow engine for bioinformatic analyses. Bioinformatics 27 (7). , 2011 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785512Fine-tuning structural RNA alignments in the twilight zonePUB | PDF | DOI | WoS | PubMed | Europe PMC
Bremges, Andreas, Fine-tuning structural RNA alignments in the twilight zone. BMC Bioinformatics 11 (1). , 2010 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785497A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium melilotiPUB | PDF | DOI | WoS | PubMed | Europe PMC
Schlüter, Jan-Philip, A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti. BMC Genomics 11 (1). , 2010 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796697Analyzing ambiguity of context-free grammarsPUB | DOI | WoS
Brabrand, Claus, Analyzing ambiguity of context-free grammars. SCIENCE OF COMPUTER PROGRAMMING 75 (3). , 2010 -
2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1894008Prediction of RNA Secondary Structure Including Kissing Hairpin MotifsPUB | Datei | DOI
Theis, Corinna, Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs. Algorithms in Bioinformatics. 10th international workshop (WABI 2010), proceedings 6293 (). Berlin, 2010 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893946Faster computation of exact RNA shape probabilitiesPUB | Datei | DOI | WoS | PubMed | Europe PMC
Janssen, Stefan, Faster computation of exact RNA shape probabilities. Bioinformatics 26 (5). , 2010 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785581WAMI: a web server for the analysis of minisatellite mapsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Abouelhoda, Mohamed, WAMI: a web server for the analysis of minisatellite maps. BMC Evolutionary Biology 10 (1). , 2010 -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589458Significant speedup of database searches with HMMs by search space reduction with PSSM family modelsPUB | DOI | WoS | PubMed | Europe PMC
Beckstette, Michael, Significant speedup of database searches with HMMs by search space reduction with PSSM family models. Bioinformatics 25 (24). , 2009 -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383365Alignment of minisatellite maps based on run-length encoding schemePUB | DOI | PubMed | Europe PMC
Abouelhoda, Mohamed, Alignment of minisatellite maps based on run-length encoding scheme. Journal of Bioinformatics and Computational Biology 7 (02). , 2009 -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383411RNA secondary structure analysis using the RNAshapes packagePUB | DOI | PubMed | Europe PMC
Reeder, Jens, RNA secondary structure analysis using the RNAshapes package. Current Protocols in Bioinformatics 26 (1). , 2009 -
2009 | Konferenzbeitrag | Entwurf | PUB-ID: 2383425GPU Parallization of Algebraic Dynamic ProgrammingPUB
Steffen, Peter, GPU Parallization of Algebraic Dynamic Programming. Proceedings PPAM (). , 2009 -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634374mkESA: enhanced suffix array construction toolPUB | DOI | WoS | PubMed | Europe PMC
Homann, Robert, mkESA: enhanced suffix array construction tool. Bioinformatics 25 (8). , 2009 -
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383382Alignment of Minisatellite Maps: A Minimum Spanning Tree based ApproachPUB | DOI
Abouelhoda, Mohamed I., Alignment of Minisatellite Maps: A Minimum Spanning Tree based Approach. Proceedings of the 6th Asia-Pacific Bioinformatics Conference (). , 2008 -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784020GeneFisher-P: variations of GeneFisher as processes in Bio-jETIPUB | PDF | DOI | WoS | PubMed | Europe PMC
Lamprecht, Anna-Lena, GeneFisher-P: variations of GeneFisher as processes in Bio-jETI. BMC Bioinformatics 9 (Suppl 4). , 2008 -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784025Efficient computation of absent words in genomic sequencesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Herold, Julia, Efficient computation of absent words in genomic sequences. BMC Bioinformatics 9 (1). , 2008 -
2008 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1587496Looking for non-coding RNAs in Corynebacterium glutamicumPUB | WoS
Gkogkoglou, K., Looking for non-coding RNAs in Corynebacterium glutamicum. 275 (Suppl. 1). , 2008 -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588303Two interactive bioinformatics courses at the bielefeld university bioinformatics serverPUB | DOI | WoS | PubMed | Europe PMC
Sczyrba, Alexander, Two interactive bioinformatics courses at the bielefeld university bioinformatics server. BRIEFINGS IN BIOINFORMATICS 9 (3). , 2008 -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588308The BREW workshop series: a stimulating experience in PhD educationPUB | DOI | WoS | PubMed | Europe PMC
Giegerich, Robert, The BREW workshop series: a stimulating experience in PhD education. Briefings in Bioinformatics 9 (3). , 2008 -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783357KnotInFrame: prediction of –1 ribosomal frameshift eventsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Theis, Corinna, KnotInFrame: prediction of –1 ribosomal frameshift events. Nucleic Acids Research 36 (18). , 2008 -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893917Shape based indexing for faster search of RNA family databasesPUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
Janssen, Stefan, Shape based indexing for faster search of RNA family databases. BMC Bioinformatics 9 (1). , 2008 -
2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1593132Locomotif: from graphical motif description to RNA motif searchPUB | DOI | WoS | PubMed | Europe PMC
Reeder, Janina, Locomotif: from graphical motif description to RNA motif search. Bioinformatics 23 (13). , 2007 -
2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383428Analyzing Ambiguity of Context-Free GrammarsPUB | DOI
Brabrand, Claus, Analyzing Ambiguity of Context-Free Grammars. Implementation and Application of Automata. 12th International Conference, CIAA 2007, July 16-18, 2007, Revised Selected Papers (). , 2007 -
2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383462Webservices and Workflows on the Bielefeld Bioinformatics Server: Practices and ProblemsPUB
Hartmeier, Sven, Webservices and Workflows on the Bielefeld Bioinformatics Server: Practices and Problems. Proceedings (). , 2007 -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587974pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windowsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Reeder, Jens, pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows. NUCLEIC ACIDS RESEARCH 35 (Web Server). , 2007 -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773864Fast index based algorithms and software for matching position specific scoring matricesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Beckstette, Michael, Fast index based algorithms and software for matching position specific scoring matrices. BMC Bioinformatics 7 (1). , 2006 -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597065Surprises in approximating Levenshtein distancesPUB | DOI | WoS | PubMed | Europe PMC
Baake, Michael, Surprises in approximating Levenshtein distances. JOURNAL OF THEORETICAL BIOLOGY 243 (2). , 2006 -
2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383464Challenges in the Compilation of a Domain Specific Language for Dynamic ProgrammingPUB
Giegerich, Robert, Challenges in the Compilation of a Domain Specific Language for Dynamic Programming. Proceedings of te 2006 ACM Symposium on Applied Computing (). , 2006 -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1902179GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing.PUB | DOI | WoS | PubMed | Europe PMC
Gerlach, Wolfgang, GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing.. Bioinformatics 22 (6). , 2006 -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946336Thermodynamic matchers: strengthening the significance of RNA folding energiesPUB | DOI | PubMed | Europe PMC
Höchsmann, Thomas, Thermodynamic matchers: strengthening the significance of RNA folding energies. Comput Syst Bioinformatics Conf (). , 2006 -
2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383518A graphical programming system for molecular motif searchPUB
Reeder, Janina, A graphical programming system for molecular motif search. Proceedings of the 5th International Conference on Generative Programming and Component Engineering (). , 2006 -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773871XML schemas for common bioinformatic data types and their application in workflow systemsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Seibel, Philipp N., XML schemas for common bioinformatic data types and their application in workflow systems. BMC Bioinformatics 7 (1). , 2006 -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600726Calculating PSSM probabilities with lazy dynamic programmingPUB | DOI | WoS
Malde, Ketil, Calculating PSSM probabilities with lazy dynamic programming. Jornal of Functional Programming 16 (01). , 2006 -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773640Correction: Versatile and declarative dynamic programming using pair algebrasPUB | PDF | DOI | WoS
Steffen, Peter, Correction: Versatile and declarative dynamic programming using pair algebras. BMC Bioinformatics 7 (1). , 2006 -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597805Table design in dynamic programmingPUB | DOI | WoS
Steffen, Peter, Table design in dynamic programming. INFORMATION AND COMPUTATION 204 (9). , 2006 -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600421RNAshapes: an integrated RNA analysis package based on abstract shapesPUB | DOI | WoS | PubMed | Europe PMC
Steffen, Peter, RNAshapes: an integrated RNA analysis package based on abstract shapes. Bioinformatics 22 (4). , 2006 -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773637Complete probabilistic analysis of RNA shapesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Voß, Björn, Complete probabilistic analysis of RNA shapes. BMC Biology 4 (1). , 2006 -
2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1598807Beyond Mfold: recent advances in RNA bioinformaticsPUB | DOI | WoS | PubMed | Europe PMC
Reeder, Jens, Beyond Mfold: recent advances in RNA bioinformatics. Journal of Biotechnology 124 (1). , 2006 -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773613XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevisPUB | PDF | DOI | WoS | PubMed | Europe PMC
Sczyrba, Alexander, XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis. BMC Genomics 6 (1). , 2005 -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602431Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure predictionPUB | DOI | WoS | PubMed | Europe PMC
Reeder, Jens, Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction. BIOINFORMATICS 21 (17). , 2005 -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773595Effective ambiguity checking in biosequence analysisPUB | PDF | DOI | WoS | PubMed | Europe PMC
Reeder, Janina, Effective ambiguity checking in biosequence analysis. BMC Bioinformatics 6 (1). , 2005 -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773598Versatile and declarative dynamic programming using pair algebrasPUB | PDF | DOI | WoS | PubMed | Europe PMC
Steffen, Peter, Versatile and declarative dynamic programming using pair algebras. BMC Bioinformatics 6 (1). , 2005 -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383529Genlight: Interactive high-throughput sequence analysis and comparative genomicsPUB | DOI
Beckstette, Michael, Genlight: Interactive high-throughput sequence analysis and comparative genomics. Journal of Integrative Bioinformatics 1 (1). , 2004 -
2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383561Identification of 10,500 Xenopus laevis Full Length Clones through EST Clustering and Sequence AnalysisPUB
Sczyrba, Alexander, Identification of 10,500 Xenopus laevis Full Length Clones through EST Clustering and Sequence Analysis. German Conference on Bioinformatics 2004 : GCB 2004, October 4 - 6, 2004, Bielefeld, Germany 53 (). Bonn, 2004 -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607394e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequencesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Krüger, Jan, e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences. NUCLEIC ACIDS RESEARCH 32 (Web Server). , 2004 -
2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383543PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix ArraysPUB
Beckstette, Michael, PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays. Proceedings of the German Conference on Bioinformatics (). Lecture Notes in Informatics, 2004 -
2004 | Konferenzband | Veröffentlicht | PUB-ID: 1918823Proceedings of the German Conference on Bioinformatics, GCB 2004PUB
Giegerich, Robert, Proceedings of the German Conference on Bioinformatics, GCB 2004. P-53 (). Bonn, 2004 -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606377Fast and effective prediction of microRNA/target duplexesPUB | DOI | WoS | PubMed | Europe PMC
Rehmsmeier, Marc, Fast and effective prediction of microRNA/target duplexes. RNA-A PUBLICATION OF THE RNA SOCIETY 10 (10). , 2004 -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606822GenAlyzer: interactive visualization of sequence similarities between entire genomesPUB | DOI | WoS | PubMed | Europe PMC
Choudhuri, Jomuna V, GenAlyzer: interactive visualization of sequence similarities between entire genomes. BIOINFORMATICS 20 (12). , 2004 -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607419Evaluating the predictability of conformational switching in RNAPUB | DOI | WoS | PubMed | Europe PMC
Voss, Björn, Evaluating the predictability of conformational switching in RNA. Bioinformatics 20 (10). , 2004 -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607656A discipline of dynamic programming over sequence dataPUB | DOI | WoS
Giegerich, Robert, A discipline of dynamic programming over sequence data. SCIENCE OF COMPUTER PROGRAMMING 51 (3). , 2004 -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606393Abstract shapes of RNAPUB | PDF | DOI | WoS | PubMed | Europe PMC
Giegerich, Robert, Abstract shapes of RNA. Nucleic Acids Research 32 (16). , 2004 -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773758Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamicsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Reeder, Jens, Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics. BMC Bioinformatics 5 (1). , 2004 -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773747A comprehensive comparison of comparative RNA structure prediction approachesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Gardner, Paul P., A comprehensive comparison of comparative RNA structure prediction approaches. BMC Bioinformatics 5 (1). , 2004 -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600293Pure multiple RNA secondary structure alignments: A progressive profile approachPUB | DOI | WoS | PubMed | Europe PMC
Höchsmann, Matthias, Pure multiple RNA secondary structure alignments: A progressive profile approach. IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATIOCS 1 (1). , 2004 -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773844RNA-related tools on the Bielefeld Bioinformatics ServerPUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
Sczyrba, Alexander, RNA-related tools on the Bielefeld Bioinformatics Server. Nucleic Acids Research 31 (13). , 2003 -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383602Fibonacci-Cayley-numbers and Repetition Pattern in Genomic DNAPUB
Dress, Andreas, Fibonacci-Cayley-numbers and Repetition Pattern in Genomic DNA. Annals of Combinatorics (). , 2003 -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1918949Finden, fast ohne zu suchen: Indexstrukturen in der BioinformatikPUB
Giegerich, Robert, Finden, fast ohne zu suchen: Indexstrukturen in der Bioinformatik. Forschung an der Universität Bielefeld 26 (). , 2003 -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610397Efficient implementation of lazy suffix treesPUB | PDF | DOI | WoS
Giegerich, Robert, Efficient implementation of lazy suffix trees. SOFTWARE-PRACTICE & EXPERIENCE 33 (11). , 2003 -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880GenDB - an open source genome annotation system for prokaryote genomesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Meyer, Folker, GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research 31 (8). , 2003 -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1666680Local similarity in RNA secondary structures.PUB | PubMed | Europe PMC
Höchsmann, Matthias, Local similarity in RNA secondary structures.. Proc IEEE Comput Soc Bioinform Conf 2 (). , 2003 -
2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383608Algebraic Dynamic ProgrammingPUB
Giegerich, Robert, Algebraic Dynamic Programming. Algebraic Methodology and Software Technology (). , 2002 -
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1614870Matching and significance evaluation of combined sequence-structure motifs in RNAPUB | DOI | WoS
Meyer, Carsten, Matching and significance evaluation of combined sequence-structure motifs in RNA. ZEITSCHRIFT FÜR PHYSIKALISCHE CHEMIE-INTERNATIONAL JOURNAL OF RESEARCH IN PHYSICAL CHEMISTRY & CHEMICAL PHYSICS 216 (2/2002). , 2002 -
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615366PathFinder: reconstruction and dynamic visualization of metabolic pathwaysPUB | DOI | WoS | PubMed | Europe PMC
Goesmann, Alexander, PathFinder: reconstruction and dynamic visualization of metabolic pathways. BIOINFORMATICS 18 (1). , 2002 -
2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1612812Implementing algebraic dynamic programming in the functional and the imperative programming paradigmPUB | WoS
Giegerich, Robert, Implementing algebraic dynamic programming in the functional and the imperative programming paradigm. MATHEMATICS OF PROGRAM CONSTRUCTION 2386 (). Berlin ; Heidelberg ; New York ; Barcelona ; Hong Kong ; London ; Milan ; Paris ; Tokyo, 2002 -
2001 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383615Reducing the Conformation Space in RNA Structure PredictionPUB
Evers, Dirk, Reducing the Conformation Space in RNA Structure Prediction. Proceedings of the German Conference on Bioinformatics (). , 2001 -
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615460Best systematist practice transferred to molecular dataPUB | DOI | WoS
Fuellen, Georg, Best systematist practice transferred to molecular data. ORGANISMS DIVERSITY & EVOLUTION 1 (4). , 2001 -
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615572Minimum conflict: a divide-and-conquer approach to phylogeny estimationPUB | DOI | WoS | PubMed | Europe PMC
Fuellen, Georg, Minimum conflict: a divide-and-conquer approach to phylogeny estimation. BIOINFORMATICS 17 (12). , 2001 -
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773335REPuter: the manifold applications of repeat analysis on a genomic scalePUB | PDF | DOI | WoS | PubMed | Europe PMC
Kurtz, Stefan, REPuter: the manifold applications of repeat analysis on a genomic scale. Nucleic Acids Research 29 (22). , 2001 -
2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383618Bioinformatik: Jäger, Sammler und Forscher im Daten-Dschungel der MolekularbiologiePUB
Giegerich, Robert, Bioinformatik: Jäger, Sammler und Forscher im Daten-Dschungel der Molekularbiologie. BIOforum 1-2 (). , 2000 -
2000 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1618572Explaining and controlling ambiguity in dynamic programmingPUB | WoS
Giegerich, Robert, Explaining and controlling ambiguity in dynamic programming. Combinatorial Pattern Matching. 11th Annual Symposium CPM 2000, Proceedings 1848 (). Berlin, 2000 -
2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1618574A systematic approach to dynamic programming in bioinformaticsPUB | DOI | WoS | PubMed | Europe PMC
Giegerich, Robert, A systematic approach to dynamic programming in bioinformatics. BIOINFORMATICS 16 (8). , 2000 -
2000 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1918988Computation and Visualization of Degenerate Repeats in Complete GenomesPUB | PubMed | Europe PMC
Kurtz, Stefan, Computation and Visualization of Degenerate Repeats in Complete Genomes. Proc. of ISMB 2000 (). , 2000 -
1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1947682Prediction and visualization of structural switches in RNAPUB | PubMed | Europe PMC
Giegerich, Robert, Prediction and visualization of structural switches in RNA. Pac Symp Biocomput (). , 1999 -
1999 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1620435Efficient implementation of lazy suffix treesPUB | DOI | WoS
Giegerich, Robert, Efficient implementation of lazy suffix trees. Algorithm Engineering. 3rd International Workshop, WAE’99 London, UK, July 19–21, 1999 Proceedings 1668 (). , 1999 -
1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1623374RNA movies: visualizing RNA secondary structure spacesPUB | DOI | WoS | PubMed | Europe PMC
Evers, Dirk J., RNA movies: visualizing RNA secondary structure spaces. BIOINFORMATICS 15 (1). , 1999 -
1998 | Konferenzbeitrag | PUB-ID: 1883741ViSeL: An interactive Virtual Laboratory for DNA SequencingPUB
Lorenz, Dieter, ViSeL: An interactive Virtual Laboratory for DNA Sequencing. Tagungsband zum Workshop "Multimedia-Systeme" im Rahmen der GI-Jahrestagung 1998 (). Magdeburg, 1998 -
1997 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383634International, interdisziplinär und interaaktiv: Der VSNS-Kurs über BioComputingPUB
Fuellen, Georg, International, interdisziplinär und interaaktiv: Der VSNS-Kurs über BioComputing. Proceedings: Virtueller Campus (). , 1997 -
1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1627522From Ukkonen to McCreight and Weiner: A unifying view of linear-time suffix tree constructionPUB | DOI | WoS
Giegerich, Robert, From Ukkonen to McCreight and Weiner: A unifying view of linear-time suffix tree construction. ALGORITHMICA 19 (3). , 1997 -
1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1639486Analysis of RNA sequence structure maps by exhaustive enumeration .2. structures of neutral networks and shape space coveringPUB | DOI | WoS
Grüner, Walter, Analysis of RNA sequence structure maps by exhaustive enumeration .2. structures of neutral networks and shape space covering. Monatshefte für Chemie 127 (4). , 1996 -
1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1639477Analysis of RNA sequence structure maps by exhaustive enumeration .1. Neutral networksPUB | DOI | WoS
Grüner, Walter, Analysis of RNA sequence structure maps by exhaustive enumeration .1. Neutral networks. Monatshefte für Chemie 127 (4). , 1996 -
1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1947921GeneFisher--software support for the detection of postulated genesPUB | PubMed | Europe PMC
Giegerich, Robert, GeneFisher--software support for the detection of postulated genes. Proc Int Conf Intell Syst Mol Biol 4 (). , 1996 -
1995 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1628987A comparison of imperative and purely functional suffix tree constructionsPUB | DOI | WoS
Giegerich, Robert, A comparison of imperative and purely functional suffix tree constructions. Science of Computer Programming 25 (2-3). , 1995 -
1995 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1639513A new calculus for semantic matchingPUB | WoS
Bütow, Bernd, A new calculus for semantic matching. Programming languages: implementations, logics and programs. 7th international symposium ; proceedings 982 (). Berlin, 1995 -
1992 | Report | PUB-ID: 2383632Embedding Sequence Analysis in the Functional Programming Paradigm - A Feasability StudyPUB
Giegerich, Robert, Embedding Sequence Analysis in the Functional Programming Paradigm - A Feasability Study. (). Universität Bielefeld, 1992 -
1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383627An Implicit Representation of Infinite Sequences of TermsPUB
Giegerich, Robert, An Implicit Representation of Infinite Sequences of Terms. Bulletin of the EATCS 43 (). , 1991 -
1990 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1651134CODE SELECTION BY INVERSION OF ORDER-SORTED DERIVORSPUB | DOI | WoS
Giegerich, Robert, CODE SELECTION BY INVERSION OF ORDER-SORTED DERIVORS. Theoretical Computer Science 73 (2). , 1990 -
1990 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1651466ON THE STRUCTURE OF VERIFIABLE CODE GENERATOR SPECIFICATIONSPUB | WoS
Giegerich, Robert, ON THE STRUCTURE OF VERIFIABLE CODE GENERATOR SPECIFICATIONS. 25 (6). , 1990