Robert Giegerich
PEVZ-ID
111 Publikationen
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901460Löwes, B., et al., 2017. The BRaliBase Dent – a Tale of Benchmark Design and Interpretation. Briefings in Bioinformatics, 18(2), p 306-311.PUB | DOI | WoS | PubMed | Europe PMC
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2733607Reinkensmeier, J., & Giegerich, R., 2015. Thermodynamic matchers for the construction of the cuckoo RNA family. RNA Biology, 12(2), p 197-207.PUB | DOI | WoS | PubMed | Europe PMC
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2700599Janssen, S., & Giegerich, R., 2014. The RNA shapes studio. Bioinformatics, 31(3), p 423-425.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699802Torres-Quesada, O., et al., 2014. Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti. RNA Biology, 11(5), p 563-579.PUB | DOI | WoS | PubMed | Europe PMC
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699792Becker, A., et al., 2014. Riboregulation in plant-associated alpha-proteobacteria. RNA Biology, 11(5), p 550-562.PUB | DOI | WoS | PubMed | Europe PMC
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2014 | Konferenzband | Veröffentlicht | PUB-ID: 2901695R. Giegerich, R. Hofestädt, & T. W. Nattkemper, eds., 2014. German Conference on Bioinformatics 2014. GI-Edition: lecture notes in informatics, 235.PUB
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2584661Schlueter, J.-P., et al., 2013. Global mapping of transcription start sites and promoter motifs in the symbiotic a-proteobacterium Sinorhizobium meliloti 1021. Bmc Genomics, 14(1): 156.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2551798Sauthoff, G., et al., 2013. Bellman's GAP -- a Language and Compiler for Dynamic Programming in Sequence Analysis. Bioinformatics, 29(5), p 551-560.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645192Gillett, A., et al., 2013. A Silent Exonic SNP in Kdm3a Affects Nucleic Acids Structure but Does Not Regulate Experimental Autoimmune Encephalomyelitis. Plos One, 8(12): e81912.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901275Löwes, B., & Giegerich, R., 2013. Avoiding Ambiguity and Assessing Uniqueness in Minisatellite Alignment. In T. Beißbarth, et al., eds. German Conference on Bioinformatics 2013. OpenAccess Series in Informatics (OASIcs). no.34 Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik, pp. 110-124.PUB | DOI
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2547307El-Kalioby, M., et al., 2012. Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package. BMC Bioinformatics, 13(Suppl 17): S22.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Sammelwerksbeitrag | PUB-ID: 2439665Janssen, S., & Giegerich, R., 2012. Abstract Shape Analysis of RNA. In J. Gorodkin & Z. Weinberg, eds. RNA Bioinformatics t.b.a. pp. 1-35.PUB
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2410526Janssen, S., et al., 2011. Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction. BMC Bioinformatics, 12(1): 429.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427226Reinkensmeier, J., et al., 2011. Conservation and Occurrence of Trans-Encoded sRNAs in the Rhizobiales. GENES, 2(4), p 925-956.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383357Giegerich, R., & Sauthoff, G., 2011. Yield grammar analysis in the Bellman's GAP compiler. In Proceedings of the Eleventh Workshop on Language Descriptions, Tools and Applications (ACM).PUB
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2310489Sauthoff, G., Janssen, S., & Giegerich, R., 2011. Bellman's GAP: a declarative language for dynamic programming. In Proceedings of the 13th international ACM SIGPLAN symposium on Principles and practices of declarative programming. New York, NY, USA: ACM, pp. 29-40.PUB | DOI | Download (ext.)
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003355Giegerich, R., & Hoener Zu Siederdissen, C., 2011. Semantics and Ambiguity of Stochastic RNA Family Models. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 8(2), p 499-516.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578Linke, B., Giegerich, R., & Goesmann, A., 2011. Conveyor: a workflow engine for bioinformatic analyses. Bioinformatics, 27(7), p 903-911.PUB | DOI | WoS | PubMed | Europe PMC
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1894008Theis, C., Janssen, S., & Giegerich, R., 2010. Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs. In V. Moulton & M. Singh, eds. Algorithms in Bioinformatics. 10th international workshop (WABI 2010), proceedings. Lecture Notes in Bioinformatics. no.6293 Berlin: Springer, pp. 52-64.PUB | Datei | DOI
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589458Beckstette, M., et al., 2009. Significant speedup of database searches with HMMs by search space reduction with PSSM family models. Bioinformatics, 25(24), p 3251-3258.PUB | DOI | WoS | PubMed | Europe PMC
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383365Abouelhoda, M., et al., 2009. Alignment of minisatellite maps based on run-length encoding scheme. Journal of Bioinformatics and Computational Biology, 7(02), p 287-308.PUB | DOI | PubMed | Europe PMC
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383411Reeder, J., & Giegerich, R., 2009. RNA secondary structure analysis using the RNAshapes package. Current Protocols in Bioinformatics, 26(1), p Unit12.8.PUB | DOI | PubMed | Europe PMC
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2009 | Konferenzbeitrag | Entwurf | PUB-ID: 2383425Steffen, P., Giegerich, R., & Giraud, M., Unpublished. GPU Parallization of Algebraic Dynamic Programming. In Proceedings PPAM.PUB
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634374Homann, R., et al., 2009. mkESA: enhanced suffix array construction tool. Bioinformatics, 25(8), p 1084-1085.PUB | DOI | WoS | PubMed | Europe PMC
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383382Abouelhoda, M.I., et al., 2008. Alignment of Minisatellite Maps: A Minimum Spanning Tree based Approach. In Proceedings of the 6th Asia-Pacific Bioinformatics Conference. Series on Advances in Bioinformatics and Computational Biology, 6. pp. 261-272.PUB | DOI
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588303Sczyrba, A., Konermann, S., & Giegerich, R., 2008. Two interactive bioinformatics courses at the bielefeld university bioinformatics server. BRIEFINGS IN BIOINFORMATICS, 9(3), p 243-249.PUB | DOI | WoS | PubMed | Europe PMC
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588308Giegerich, R., et al., 2008. The BREW workshop series: a stimulating experience in PhD education. Briefings in Bioinformatics, 9(3), p 250-253.PUB | DOI | WoS | PubMed | Europe PMC
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893917Janssen, S., Reeder, J., & Giegerich, R., 2008. Shape based indexing for faster search of RNA family databases. BMC Bioinformatics, 9(1), p 131.PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1593132Reeder, J., Reeder, J., & Giegerich, R., 2007. Locomotif: from graphical motif description to RNA motif search. In Bioinformatics. Bioinformatics. no.23 OXFORD UNIV PRESS, pp. I392-I400.PUB | DOI | WoS | PubMed | Europe PMC
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383428Brabrand, C., Giegerich, R., & Moeller, A., 2007. Analyzing Ambiguity of Context-Free Grammars. In J. Holub & J. Žďárek, eds. Implementation and Application of Automata. 12th International Conference, CIAA 2007, July 16-18, 2007, Revised Selected Papers. Lecture Notes in Computer Science, 4783. Springer.PUB | DOI
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383462Hartmeier, S., Krüger, J., & Giegerich, R., 2007. Webservices and Workflows on the Bielefeld Bioinformatics Server: Practices and Problems. In Proceedings.PUB
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597065Baake, M., Grimm, U., & Giegerich, R., 2006. Surprises in approximating Levenshtein distances. JOURNAL OF THEORETICAL BIOLOGY, 243(2), p 279-282.PUB | DOI | WoS | PubMed | Europe PMC
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383464Giegerich, R., & Steffen, P., 2006. Challenges in the Compilation of a Domain Specific Language for Dynamic Programming. In Proceedings of te 2006 ACM Symposium on Applied Computing.PUB
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1902179Gerlach, W., & Giegerich, R., 2006. GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing. Bioinformatics, 22(6), p 762-764.PUB | DOI | WoS | PubMed | Europe PMC
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946336Höchsmann, T., Höchsmann, M., & Giegerich, R., 2006. Thermodynamic matchers: strengthening the significance of RNA folding energies. Comput Syst Bioinformatics Conf, , p 111-121.PUB | DOI | PubMed | Europe PMC
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383518Reeder, J., & Giegerich, R., 2006. A graphical programming system for molecular motif search. In Proceedings of the 5th International Conference on Generative Programming and Component Engineering. ACM Press, pp. 131-140.PUB
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600421Steffen, P., et al., 2006. RNAshapes: an integrated RNA analysis package based on abstract shapes. Bioinformatics, 22(4), p 500-503.PUB | DOI | WoS | PubMed | Europe PMC
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1598807Reeder, J., et al., 2006. Beyond Mfold: recent advances in RNA bioinformatics. In Journal of Biotechnology. JOURNAL OF BIOTECHNOLOGY. no.124 ELSEVIER SCIENCE BV, pp. 41-55.PUB | DOI | WoS | PubMed | Europe PMC
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602431Reeder, J., & Giegerich, R., 2005. Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction. BIOINFORMATICS, 21(17), p 3516-3523.PUB | DOI | WoS | PubMed | Europe PMC
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2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383561Sczyrba, A., et al., 2004. Identification of 10,500 Xenopus laevis Full Length Clones through EST Clustering and Sequence Analysis. In R. Giegerich & J. Stoye, eds. German Conference on Bioinformatics 2004 : GCB 2004, October 4 - 6, 2004, Bielefeld, Germany . GI-Edition / Proceedings. no.53 Bonn: Gesellschaft für Informatik, pp. 6-7.PUB
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2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383543Beckstette, M., et al., 2004. PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays. In Proceedings of the German Conference on Bioinformatics. Lecture Notes in Informatics: GI, pp. 53-64.PUB
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2004 | Konferenzband | Veröffentlicht | PUB-ID: 1918823R. Giegerich & J. Stoye, eds., 2004. Proceedings of the German Conference on Bioinformatics, GCB 2004. Lecture Notes in Informatics, P-53, p 234.PUB
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606377Rehmsmeier, M., et al., 2004. Fast and effective prediction of microRNA/target duplexes. RNA-A PUBLICATION OF THE RNA SOCIETY, 10(10), p 1507-1517.PUB | DOI | WoS | PubMed | Europe PMC
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606822Choudhuri, J.V., et al., 2004. GenAlyzer: interactive visualization of sequence similarities between entire genomes. BIOINFORMATICS, 20(12), p 1964-1965.PUB | DOI | WoS | PubMed | Europe PMC
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607419Voss, B., Meyer, C., & Giegerich, R., 2004. Evaluating the predictability of conformational switching in RNA. Bioinformatics, 20(10), p 1573-1582.PUB | DOI | WoS | PubMed | Europe PMC
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600293Höchsmann, M., Voss, B., & Giegerich, R., 2004. Pure multiple RNA secondary structure alignments: A progressive profile approach. IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATIOCS, 1(1), p 53-62.PUB | DOI | WoS | PubMed | Europe PMC
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773844Sczyrba, A., et al., 2003. RNA-related tools on the Bielefeld Bioinformatics Server. Nucleic Acids Research, 31(13), p 3767-3770.PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383602Dress, A., et al., 2003. Fibonacci-Cayley-numbers and Repetition Pattern in Genomic DNA. Annals of Combinatorics, , p 259-279.PUB
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1918949Giegerich, R., & Stoye, J., 2003. Finden, fast ohne zu suchen: Indexstrukturen in der Bioinformatik. Forschung an der Universität Bielefeld, 26, p 63-68.PUB
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1666680Höchsmann, M., et al., 2003. Local similarity in RNA secondary structures. Proc IEEE Comput Soc Bioinform Conf, 2, p 159-168.PUB | PubMed | Europe PMC
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2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383608Giegerich, R., & Meyer, C., 2002. Algebraic Dynamic Programming. In Algebraic Methodology and Software Technology. Springer, pp. 349-364.PUB
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1614870Meyer, C., & Giegerich, R., 2002. Matching and significance evaluation of combined sequence-structure motifs in RNA. ZEITSCHRIFT FÜR PHYSIKALISCHE CHEMIE-INTERNATIONAL JOURNAL OF RESEARCH IN PHYSICAL CHEMISTRY & CHEMICAL PHYSICS, 216(2/2002), p 193-216.PUB | DOI | WoS
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615366Goesmann, A., et al., 2002. PathFinder: reconstruction and dynamic visualization of metabolic pathways. BIOINFORMATICS, 18(1), p 124-129.PUB | DOI | WoS | PubMed | Europe PMC
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2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1612812Giegerich, R., & Steffen, P., 2002. Implementing algebraic dynamic programming in the functional and the imperative programming paradigm. In E. Boiten, ed. MATHEMATICS OF PROGRAM CONSTRUCTION. Lecture Notes in Computer Science. no.2386 Berlin ; Heidelberg ; New York ; Barcelona ; Hong Kong ; London ; Milan ; Paris ; Tokyo: SPRINGER-VERLAG BERLIN, pp. 1-20.PUB | WoS
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2001 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383615Evers, D., & Giegerich, R., 2001. Reducing the Conformation Space in RNA Structure Prediction. In Proceedings of the German Conference on Bioinformatics. pp. 118-124.PUB
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2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615572Fuellen, G., Wägele, J.W., & Giegerich, R., 2001. Minimum conflict: a divide-and-conquer approach to phylogeny estimation. BIOINFORMATICS, 17(12), p 1168-1178.PUB | DOI | WoS | PubMed | Europe PMC
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2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383618Giegerich, R., & Evers, D., 2000. Bioinformatik: Jäger, Sammler und Forscher im Daten-Dschungel der Molekularbiologie. BIOforum, 1-2, p 30-32.PUB
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2000 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1618572Giegerich, R., 2000. Explaining and controlling ambiguity in dynamic programming. In R. Giancarlo & D. Sankoff, eds. Combinatorial Pattern Matching. 11th Annual Symposium CPM 2000, Proceedings. Lecture Notes in Computer Science. no.1848 Berlin: Springer, pp. 46-59.PUB | WoS
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2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1618574Giegerich, R., 2000. A systematic approach to dynamic programming in bioinformatics. BIOINFORMATICS, 16(8), p 665-677.PUB | DOI | WoS | PubMed | Europe PMC
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2000 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1918988Kurtz, S., et al., 2000. Computation and Visualization of Degenerate Repeats in Complete Genomes. In Proc. of ISMB 2000. pp. 228-238.PUB | PubMed | Europe PMC
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1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1947682Giegerich, R., Haase, D., & Rehmsmeier, M., 1999. Prediction and visualization of structural switches in RNA. Pac Symp Biocomput, , p 126-137.PUB | PubMed | Europe PMC
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1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1623374Evers, D.J., & Giegerich, R., 1999. RNA movies: visualizing RNA secondary structure spaces. BIOINFORMATICS, 15(1), p 32-37.PUB | DOI | WoS | PubMed | Europe PMC
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1998 | Konferenzbeitrag | PUB-ID: 1883741Lorenz, D., & Giegerich, R., 1998. ViSeL: An interactive Virtual Laboratory for DNA Sequencing. In Tagungsband zum Workshop "Multimedia-Systeme" im Rahmen der GI-Jahrestagung 1998. Magdeburg, pp. 53-65.PUB
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1997 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383634Fuellen, G., & Giegerich, R., 1997. International, interdisziplinär und interaaktiv: Der VSNS-Kurs über BioComputing. In Proceedings: Virtueller Campus. pp. 77-89.PUB
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1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1947921Giegerich, R., Meyer, F., & Schleiermacher, C., 1996. GeneFisher--software support for the detection of postulated genes. Proc Int Conf Intell Syst Mol Biol, 4, p 68-77.PUB | PubMed | Europe PMC
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1995 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1639513Bütow, B., et al., 1995. A new calculus for semantic matching. In M. Hermenegildo & S. D. Swierstra, eds. Programming languages: implementations, logics and programs. 7th international symposium ; proceedings. Lecture Notes in Computer Science. no.982 Berlin: Springer, pp. 81-96.PUB | WoS
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1992 | Report | PUB-ID: 2383632Giegerich, R., 1992. Embedding Sequence Analysis in the Functional Programming Paradigm - A Feasability Study, Report No. 8, Universität Bielefeld: Technische Fakultät.PUB
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1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383627Giegerich, R., & Ohlebusch, E., 1991. An Implicit Representation of Infinite Sequences of Terms. Bulletin of the EATCS, 43, p 174-182.PUB
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