111 Publikationen

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  • [111]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901460
    Löwes, Benedikt, Chauve, Cedric, Ponty, Yann, and Giegerich, Robert. 2017. “The BRaliBase Dent – a Tale of Benchmark Design and Interpretation”. Briefings in Bioinformatics 18 (2): 306-311.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [110]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903044
    Gatter, Thomas, Giegerich, Robert, and Saule, Cedric. 2016. “Integrating Pareto Optimization into Dynamic Programming”. ALGORITHMS 9 (1): 12.
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  • [109]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764888 OA
    Janssen, Stefan, and Giegerich, Robert. 2015. “Ambivalent covariance models”. BMC Bioinformatics 16 (1): 178.
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  • [108]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2763075 OA
    Saule, Cedric, and Giegerich, Robert. 2015. “Pareto optimization in algebraic dynamic programming”. Algorithms for Molecular Biology 10 (1): 22.
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  • [107]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2733607
    Reinkensmeier, Jan, and Giegerich, Robert. 2015. “Thermodynamic matchers for the construction of the cuckoo RNA family”. RNA Biology 12 (2): 197-207.
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  • [106]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905757
    Giegerich, Robert, and Touzet, Hélène. 2014. “Modeling Dynamic Programming Problems over Sequences and Trees with Inverse Coupled Rewrite Systems”. Algorithms 7 (1): 62-144.
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  • [105]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2700599
    Janssen, Stefan, and Giegerich, Robert. 2014. “The RNA shapes studio”. Bioinformatics 31 (3): 423-425.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [104]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699802
    Torres-Quesada, Omar, Reinkensmeier, Jan, Schlueter, Jan-Philip, Robledo, Marta, Peregrina, Alexandra, Giegerich, Robert, Toro, Nicolas, Becker, Anke, and Jimenez-Zurdo, Jose I. 2014. “Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti”. RNA Biology 11 (5): 563-579.
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  • [103]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2681698
    Sauthoff, Georg, and Giegerich, Robert. 2014. “Yield grammar analysis and product optimization in a domain-specific language for dynamic programming”. Science of Computer Programming 87: 2-22.
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  • [102]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699792
    Becker, Anke, Overloeper, Aaron, Schlueter, Jan-Philip, Reinkensmeier, Jan, Robledo, Marta, Giegerich, Robert, Narberhaus, Franz, and Evguenieva-Hackenberg, Elena. 2014. “Riboregulation in plant-associated alpha-proteobacteria”. RNA Biology 11 (5): 550-562.
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  • [101]
    2014 | Konferenzband | Veröffentlicht | PUB-ID: 2901695
    Giegerich, Robert, Hofestädt, Ralf, and Nattkemper, Tim Wilhelm, eds. 2014. “German Conference on Bioinformatics 2014”, GI-Edition: lecture notes in informatics, 235.
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  • [100]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2584661
    Schlueter, Jan-Philip, Reinkensmeier, Jan, Barnett, Melanie J., Lang, Claus, Krol, Elizaveta, Giegerich, Robert, Long, Sharon R., and Becker, Anke. 2013. “Global mapping of transcription start sites and promoter motifs in the symbiotic a-proteobacterium Sinorhizobium meliloti 1021”. Bmc Genomics 14 (1): 156.
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  • [99]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2551798
    Sauthoff, Georg, Mohl, Mathias, Janssen, Stefan, and Giegerich, Robert. 2013. “Bellman's GAP -- a Language and Compiler for Dynamic Programming in Sequence Analysis”. Bioinformatics 29 (5): 551-560.
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  • [98]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645192
    Gillett, Alan, Bergman, Petra, Parsa, Roham, Bremges, Andreas, Giegerich, Robert, and Jagodic, Maja. 2013. “A Silent Exonic SNP in Kdm3a Affects Nucleic Acids Structure but Does Not Regulate Experimental Autoimmune Encephalomyelitis”. Plos One 8 (12): e81912.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [97]
    2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901275
    Löwes, Benedikt, and Giegerich, Robert. 2013. “Avoiding Ambiguity and Assessing Uniqueness in Minisatellite Alignment”. In German Conference on Bioinformatics 2013, ed. Tim Beißbarth, Martin Kollmar, Andreas Leha, Burkhard Morgenstern, Anne-Kathrin Schultz, Stephan Waack, and Edgar Wingender, 34:110-124. OpenAccess Series in Informatics (OASIcs). Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.
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  • [96]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2607289
    Schirmer, Stefanie, and Giegerich, Robert. 2013. “Forest alignment with affine gaps and anchors, applied in RNA structure comparison”. Theoretical Computer Science 483: 51-67.
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  • [95]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2547307
    El-Kalioby, Mohamed, Abouelhoda, Mohamed, Krüger, Jan, Giegerich, Robert, Sczyrba, Alexander, Wall, Dennis P, and Tonellato, Peter. 2012. “Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package”. BMC Bioinformatics 13 (Suppl 17): S22.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [94]
    2012 | Sammelwerksbeitrag | PUB-ID: 2439665
    Janssen, Stefan, and Giegerich, Robert. 2012. “Abstract Shape Analysis of RNA”. In RNA Bioinformatics t.b.a., ed. Jan Gorodkin and Zasha Weinberg, 1-35.
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  • [93]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2410526 OA
    Janssen, Stefan, Schudoma, Christian, Steger, Gerhard, and Giegerich, Robert. 2011. “Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction”. BMC Bioinformatics 12 (1): 429.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [92]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427226
    Reinkensmeier, Jan, Schlüter, Jan-Philip, Giegerich, Robert, and Becker, Anke. 2011. “Conservation and Occurrence of Trans-Encoded sRNAs in the Rhizobiales”. GENES 2 (4): 925-956.
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  • [91]
    2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383357
    Giegerich, Robert, and Sauthoff, Georg. 2011. “Yield grammar analysis in the Bellman's GAP compiler”. In Proceedings of the Eleventh Workshop on Language Descriptions, Tools and Applications (ACM).
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  • [90]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383363
    Schirmer, Stefanie, and Giegerich, Robert. 2011. “Forest Alignment with Affine Gaps and Anchors”. Combinatorial Pattern Matching, 104-117.
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  • [89]
    2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2310489
    Sauthoff, Georg, Janssen, Stefan, and Giegerich, Robert. 2011. “Bellman's GAP: a declarative language for dynamic programming”. In Proceedings of the 13th international ACM SIGPLAN symposium on Principles and practices of declarative programming, 29-40. New York, NY, USA: ACM.
    PUB | DOI | Download (ext.)
     
  • [88]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003355
    Giegerich, Robert, and Hoener Zu Siederdissen, Christian. 2011. “Semantics and Ambiguity of Stochastic RNA Family Models”. IEEE/ACM Transactions on Computational Biology and Bioinformatics 8 (2): 499-516.
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  • [87]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578
    Linke, Burkhard, Giegerich, Robert, and Goesmann, Alexander. 2011. “Conveyor: a workflow engine for bioinformatic analyses”. Bioinformatics 27 (7): 903-911.
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  • [86]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785512 OA
    Bremges, Andreas, Schirmer, Stefanie, and Giegerich, Robert. 2010. “Fine-tuning structural RNA alignments in the twilight zone”. BMC Bioinformatics 11 (1): 222.
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  • [85]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785497 OA
    Schlüter, Jan-Philip, Reinkensmeier, Jan, Daschkey, Svenja, Evguenieva-Hackenberg, Elena, Janssen, Stefan, Jaenicke, Sebastian, Becker, Joerg D., Giegerich, Robert, and Becker, Anke. 2010. “A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti”. BMC Genomics 11 (1): 245.
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  • [84]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796697
    Brabrand, Claus, Giegerich, Robert, and Moller, Anders. 2010. “Analyzing ambiguity of context-free grammars”. SCIENCE OF COMPUTER PROGRAMMING 75 (3): 176-191.
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  • [83]
    2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1894008 OA
    Theis, Corinna, Janssen, Stefan, and Giegerich, Robert. 2010. “Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs”. In Algorithms in Bioinformatics. 10th international workshop (WABI 2010), proceedings, ed. Vincent Moulton and Mona Singh, 6293:52-64. Lecture Notes in Bioinformatics. Berlin: Springer.
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  • [82]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893946 OA
    Janssen, Stefan, and Giegerich, Robert. 2010. “Faster computation of exact RNA shape probabilities”. Bioinformatics 26 (5): 632-639.
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  • [81]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785581 OA
    Abouelhoda, Mohamed, El-Kalioby, Mohamed, and Giegerich, Robert. 2010. “WAMI: a web server for the analysis of minisatellite maps”. BMC Evolutionary Biology 10 (1): 167.
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  • [80]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589458
    Beckstette, Michael, Homann, Robert, Giegerich, Robert, and Kurtz, Stefan. 2009. “Significant speedup of database searches with HMMs by search space reduction with PSSM family models”. Bioinformatics 25 (24): 3251-3258.
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  • [79]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383365
    Abouelhoda, Mohamed, Giegerich, Robert, Behzadi, B., and Steyaert, J.M. 2009. “Alignment of minisatellite maps based on run-length encoding scheme”. Journal of Bioinformatics and Computational Biology 7 (02): 287-308.
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  • [78]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383411
    Reeder, Jens, and Giegerich, Robert. 2009. “RNA secondary structure analysis using the RNAshapes package”. Current Protocols in Bioinformatics 26 (1): Unit12.8.
    PUB | DOI | PubMed | Europe PMC
     
  • [77]
    2009 | Konferenzbeitrag | Entwurf | PUB-ID: 2383425
    Steffen, Peter, Giegerich, Robert, and Giraud, Mathieu. Unpublished. “GPU Parallization of Algebraic Dynamic Programming”. In Proceedings PPAM.
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  • [76]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634374
    Homann, Robert, Fleer, David, Giegerich, Robert, and Rehmsmeier, Marc. 2009. “mkESA: enhanced suffix array construction tool”. Bioinformatics 25 (8): 1084-1085.
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  • [75]
    2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383382
    Abouelhoda, Mohamed I., Giegerich, Robert, Behzadi, B., and Steyaert, J.M. 2008. “Alignment of Minisatellite Maps: A Minimum Spanning Tree based Approach”. In Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 261-272. Series on Advances in Bioinformatics and Computational Biology, 6.
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  • [74]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784020 OA
    Lamprecht, Anna-Lena, Margaria, Tiziana, Steffen, Bernhard, Sczyrba, Alexander, Hartmeier, Sven, and Giegerich, Robert. 2008. “GeneFisher-P: variations of GeneFisher as processes in Bio-jETI”. BMC Bioinformatics 9 (Suppl 4): S13.
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  • [73]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784025 OA
    Herold, Julia, Kurtz, Stefan, and Giegerich, Robert. 2008. “Efficient computation of absent words in genomic sequences”. BMC Bioinformatics 9 (1): 167.
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  • [72]
    2008 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1587496
    Gkogkoglou, K., Mentz, A., Albersmeier, A., Kalinowski, Jörn, and Giegerich, Robert. 2008. “Looking for non-coding RNAs in Corynebacterium glutamicum”, FEBS JOURNAL, 275 (Suppl. 1): 153.
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  • [71]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588303
    Sczyrba, Alexander, Konermann, Susanne, and Giegerich, Robert. 2008. “Two interactive bioinformatics courses at the bielefeld university bioinformatics server”. BRIEFINGS IN BIOINFORMATICS 9 (3): 243-249.
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  • [70]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588308
    Giegerich, Robert, Brazma, Alvis, Jonassen, Inge, Ukkonen, Esko, and Vingron, Martin. 2008. “The BREW workshop series: a stimulating experience in PhD education”. Briefings in Bioinformatics 9 (3): 250-253.
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  • [69]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783357 OA
    Theis, Corinna, Reeder, Jens, and Giegerich, Robert. 2008. “KnotInFrame: prediction of –1 ribosomal frameshift events”. Nucleic Acids Research 36 (18): 6013-6020.
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  • [68]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893917 OA
    Janssen, Stefan, Reeder, Jens, and Giegerich, Robert. 2008. “Shape based indexing for faster search of RNA family databases”. BMC Bioinformatics 9 (1): 131.
    PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
     
  • [67]
    2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1593132
    Reeder, Janina, Reeder, Jens, and Giegerich, Robert. 2007. “Locomotif: from graphical motif description to RNA motif search”. In Bioinformatics, 23:I392-I400. Bioinformatics. OXFORD UNIV PRESS.
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  • [66]
    2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383428
    Brabrand, Claus, Giegerich, Robert, and Moeller, Anders. 2007. “Analyzing Ambiguity of Context-Free Grammars”. In Implementation and Application of Automata. 12th International Conference, CIAA 2007, July 16-18, 2007, Revised Selected Papers, ed. Jan Holub and Jan Žďárek. Lecture Notes in Computer Science, 4783. Springer.
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  • [65]
    2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383462
    Hartmeier, Sven, Krüger, Jan, and Giegerich, Robert. 2007. “Webservices and Workflows on the Bielefeld Bioinformatics Server: Practices and Problems”. In Proceedings.
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  • [64]
    2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587974 OA
    Reeder, Jens, Steffen, Peter, and Giegerich, Robert. 2007. “pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows”. NUCLEIC ACIDS RESEARCH 35 (Web Server): W320-W324.
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  • [63]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773864 OA
    Beckstette, Michael, Homann, Robert, Giegerich, Robert, and Kurtz, Stefan. 2006. “Fast index based algorithms and software for matching position specific scoring matrices”. BMC Bioinformatics 7 (1): 389.
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  • [62]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597065
    Baake, Michael, Grimm, Uwe, and Giegerich, Robert. 2006. “Surprises in approximating Levenshtein distances”. JOURNAL OF THEORETICAL BIOLOGY 243 (2): 279-282.
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  • [61]
    2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383464
    Giegerich, Robert, and Steffen, Peter. 2006. “Challenges in the Compilation of a Domain Specific Language for Dynamic Programming”. In Proceedings of te 2006 ACM Symposium on Applied Computing.
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  • [60]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1902179
    Gerlach, Wolfgang, and Giegerich, Robert. 2006. “GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing.”. Bioinformatics 22 (6): 762-764.
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  • [59]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946336
    Höchsmann, Thomas, Höchsmann, Matthias, and Giegerich, Robert. 2006. “Thermodynamic matchers: strengthening the significance of RNA folding energies”. Comput Syst Bioinformatics Conf, 111-121.
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  • [58]
    2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383518
    Reeder, Janina, and Giegerich, Robert. 2006. “A graphical programming system for molecular motif search”. In Proceedings of the 5th International Conference on Generative Programming and Component Engineering, 131-140. ACM Press.
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  • [57]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773871 OA
    Seibel, Philipp N., Krüger, Jan, Hartmeier, Sven, Schwarzer, Knut, Löwenthal, Kai, Mersch, Henning, Dandekar, Thomas, and Giegerich, Robert. 2006. “XML schemas for common bioinformatic data types and their application in workflow systems”. BMC Bioinformatics 7 (1): 490.
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  • [56]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600726
    Malde, Ketil, and Giegerich, Robert. 2006. “Calculating PSSM probabilities with lazy dynamic programming”. Jornal of Functional Programming 16 (01): 75-81.
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  • [55]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773640 OA
    Steffen, Peter, and Giegerich, Robert. 2006. “Correction: Versatile and declarative dynamic programming using pair algebras”. BMC Bioinformatics 7 (1): 214.
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  • [54]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597805
    Steffen, Peter, and Giegerich, Robert. 2006. “Table design in dynamic programming”. INFORMATION AND COMPUTATION 204 (9): 1325-1345.
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  • [53]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600421
    Steffen, Peter, Voss, Björn, Rehmsmeier, Marc, Reeder, Jens, and Giegerich, Robert. 2006. “RNAshapes: an integrated RNA analysis package based on abstract shapes”. Bioinformatics 22 (4): 500-503.
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  • [52]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773637 OA
    Voß, Björn, Giegerich, Robert, and Rehmsmeier, Marc. 2006. “Complete probabilistic analysis of RNA shapes”. BMC Biology 4 (1): 5.
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  • [51]
    2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1598807
    Reeder, Jens, Höchsmann, Matthias, Rehmsmeier, Marc, Voss, Björn, and Giegerich, Robert. 2006. “Beyond Mfold: recent advances in RNA bioinformatics”. In Journal of Biotechnology, 124:41-55. JOURNAL OF BIOTECHNOLOGY. ELSEVIER SCIENCE BV.
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  • [50]
    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773613 OA
    Sczyrba, Alexander, Beckstette, Michael, Brivanlou, Ali H., Giegerich, Robert, and Altmann, Curtis R. 2005. “XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis”. BMC Genomics 6 (1): 123.
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  • [49]
    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602431
    Reeder, Jens, and Giegerich, Robert. 2005. “Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction”. BIOINFORMATICS 21 (17): 3516-3523.
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  • [48]
    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773595 OA
    Reeder, Janina, Steffen, Peter, and Giegerich, Robert. 2005. “Effective ambiguity checking in biosequence analysis”. BMC Bioinformatics 6 (1): 153.
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  • [47]
    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773598 OA
    Steffen, Peter, and Giegerich, Robert. 2005. “Versatile and declarative dynamic programming using pair algebras”. BMC Bioinformatics 6 (1): 224.
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  • [46]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383529
    Beckstette, Michael, Mailänder, Jens T., Marhöfer, Richard J., Sczyrba, Alexander, Ohlebusch, Enno, Giegerich, Robert, and Selzer, Paul M. 2004. “Genlight: Interactive high-throughput sequence analysis and comparative genomics”. Journal of Integrative Bioinformatics 1 (1): 90-107.
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  • [45]
    2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383561
    Sczyrba, Alexander, Beckstette, Michael, Giegerich, Robert, and Altman, Curtis. 2004. “Identification of 10,500 Xenopus laevis Full Length Clones through EST Clustering and Sequence Analysis”. In German Conference on Bioinformatics 2004 : GCB 2004, October 4 - 6, 2004, Bielefeld, Germany , ed. Robert Giegerich and Jens Stoye, 53:6-7. GI-Edition / Proceedings. Bonn: Gesellschaft für Informatik.
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  • [44]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607394 OA
    Krüger, Jan, Sczyrba, Alexander, Kurtz, Stefan, and Giegerich, Robert. 2004. “e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences”. NUCLEIC ACIDS RESEARCH 32 (Web Server): W301-W304.
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  • [43]
    2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383543
    Beckstette, Michael, Strothmann, Dirk, Homann, Robert, Giegerich, Robert, and Kurtz, Stefan. 2004. “PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays”. In Proceedings of the German Conference on Bioinformatics, 53-64. Lecture Notes in Informatics: GI.
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  • [42]
    2004 | Konferenzband | Veröffentlicht | PUB-ID: 1918823
    Giegerich, Robert, and Stoye, Jens, eds. 2004. “Proceedings of the German Conference on Bioinformatics, GCB 2004”, Lecture Notes in Informatics, P-53: 234.
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  • [41]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606377
    Rehmsmeier, Marc, Steffen, Peter, Höchsmann, Matthias, and Giegerich, Robert. 2004. “Fast and effective prediction of microRNA/target duplexes”. RNA-A PUBLICATION OF THE RNA SOCIETY 10 (10): 1507-1517.
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  • [40]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606822
    Choudhuri, Jomuna V, Schleiermacher, Chirs, Kurtz, Stefan, and Giegerich, Robert. 2004. “GenAlyzer: interactive visualization of sequence similarities between entire genomes”. BIOINFORMATICS 20 (12): 1964-1965.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [39]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607419
    Voss, Björn, Meyer, Carsten, and Giegerich, Robert. 2004. “Evaluating the predictability of conformational switching in RNA”. Bioinformatics 20 (10): 1573-1582.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [38]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607656
    Giegerich, Robert, Meyer, C, and Steffen, Peter. 2004. “A discipline of dynamic programming over sequence data”. SCIENCE OF COMPUTER PROGRAMMING 51 (3): 215-263.
    PUB | DOI | WoS
     
  • [37]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606393 OA
    Giegerich, Robert, Voss, Björn, and Rehmsmeier, Marc. 2004. “Abstract shapes of RNA”. Nucleic Acids Research 32 (16): 4843-4851.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [36]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773758 OA
    Reeder, Jens, and Giegerich, Robert. 2004. “Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics”. BMC Bioinformatics 5 (1): 104.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [35]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773747 OA
    Gardner, Paul P., and Giegerich, Robert. 2004. “A comprehensive comparison of comparative RNA structure prediction approaches”. BMC Bioinformatics 5 (1): 140.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [34]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600293
    Höchsmann, Matthias, Voss, Björn, and Giegerich, Robert. 2004. “Pure multiple RNA secondary structure alignments: A progressive profile approach”. IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATIOCS 1 (1): 53-62.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [33]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773844 OA
    Sczyrba, Alexander, Krüger, Jan, Mersch, Henning, Kurtz, Stefan, and Giegerich, Robert. 2003. “RNA-related tools on the Bielefeld Bioinformatics Server”. Nucleic Acids Research 31 (13): 3767-3770.
    PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
     
  • [32]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383602
    Dress, Andreas, Giegerich, Robert, Grünewald, S., and Wagner, Holger. 2003. “Fibonacci-Cayley-numbers and Repetition Pattern in Genomic DNA”. Annals of Combinatorics, 259-279.
    PUB
     
  • [31]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1918949
    Giegerich, Robert, and Stoye, Jens. 2003. “Finden, fast ohne zu suchen: Indexstrukturen in der Bioinformatik”. Forschung an der Universität Bielefeld 26: 63-68.
    PUB
     
  • [30]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610397 OA
    Giegerich, Robert, Kurtz, Stefan, and Stoye, Jens. 2003. “Efficient implementation of lazy suffix trees”. SOFTWARE-PRACTICE & EXPERIENCE 33 (11): 1035-1049.
    PUB | PDF | DOI | WoS
     
  • [29]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880 OA
    Meyer, Folker, Goesmann, Alexander, McHardy, Alice C., Bartels, Daniela, Bekel, Thomas, Clausen, Jörn, Kalinowski, Jörn, et al. 2003. “GenDB - an open source genome annotation system for prokaryote genomes”. Nucleic Acids Research 31 (8): 2187-2195.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [28]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1666680
    Höchsmann, Matthias, Töller, Thomas, Giegerich, Robert, and Kurtz, Stefan. 2003. “Local similarity in RNA secondary structures.”. Proc IEEE Comput Soc Bioinform Conf 2: 159-168.
    PUB | PubMed | Europe PMC
     
  • [27]
    2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383608
    Giegerich, Robert, and Meyer, Carsten. 2002. “Algebraic Dynamic Programming”. In Algebraic Methodology and Software Technology, 349-364. Springer.
    PUB
     
  • [26]
    2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1614870
    Meyer, Carsten, and Giegerich, Robert. 2002. “Matching and significance evaluation of combined sequence-structure motifs in RNA”. ZEITSCHRIFT FÜR PHYSIKALISCHE CHEMIE-INTERNATIONAL JOURNAL OF RESEARCH IN PHYSICAL CHEMISTRY & CHEMICAL PHYSICS 216 (2/2002): 193-216.
    PUB | DOI | WoS
     
  • [25]
    2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615366
    Goesmann, Alexander, Haubrock, Martin, Meyer, Folker, Kalinowski, Jörn, and Giegerich, Robert. 2002. “PathFinder: reconstruction and dynamic visualization of metabolic pathways”. BIOINFORMATICS 18 (1): 124-129.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [24]
    2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1612812
    Giegerich, Robert, and Steffen, Peter. 2002. “Implementing algebraic dynamic programming in the functional and the imperative programming paradigm”. In MATHEMATICS OF PROGRAM CONSTRUCTION, ed. Eerke Boiten, 2386:1-20. Lecture Notes in Computer Science. Berlin ; Heidelberg ; New York ; Barcelona ; Hong Kong ; London ; Milan ; Paris ; Tokyo: SPRINGER-VERLAG BERLIN.
    PUB | WoS
     
  • [23]
    2001 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383615
    Evers, Dirk, and Giegerich, Robert. 2001. “Reducing the Conformation Space in RNA Structure Prediction”. In Proceedings of the German Conference on Bioinformatics, 118-124.
    PUB
     
  • [22]
    2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615460
    Fuellen, Georg, Wägele, J. Wolfgang, and Giegerich, Robert. 2001. “Best systematist practice transferred to molecular data”. ORGANISMS DIVERSITY & EVOLUTION 1 (4): 257-272.
    PUB | DOI | WoS
     
  • [21]
    2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615572
    Fuellen, Georg, Wägele, J. Wolfgang, and Giegerich, Robert. 2001. “Minimum conflict: a divide-and-conquer approach to phylogeny estimation”. BIOINFORMATICS 17 (12): 1168-1178.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [20]
    2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773335 OA
    Kurtz, Stefan, Choudhuri, Jomuna V., Ohlebusch, Enno, Schleiermacher, Chris, Stoye, Jens, and Giegerich, Robert. 2001. “REPuter: the manifold applications of repeat analysis on a genomic scale”. Nucleic Acids Research 29 (22): 4633-4642.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [19]
    2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383618
    Giegerich, Robert, and Evers, Dirk. 2000. “Bioinformatik: Jäger, Sammler und Forscher im Daten-Dschungel der Molekularbiologie”. BIOforum 1-2: 30-32.
    PUB
     
  • [18]
    2000 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1618572
    Giegerich, Robert. 2000. “Explaining and controlling ambiguity in dynamic programming”. In Combinatorial Pattern Matching. 11th Annual Symposium CPM 2000, Proceedings, ed. Raffaele Giancarlo and David Sankoff, 1848:46-59. Lecture Notes in Computer Science. Berlin: Springer.
    PUB | WoS
     
  • [17]
    2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1618574
    Giegerich, Robert. 2000. “A systematic approach to dynamic programming in bioinformatics”. BIOINFORMATICS 16 (8): 665-677.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [16]
    2000 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1918988
    Kurtz, Stefan, Ohlebusch, Enno, Schleiermacher, Chris, Stoye, Jens, and Giegerich, Robert. 2000. “Computation and Visualization of Degenerate Repeats in Complete Genomes”. In Proc. of ISMB 2000, 228-238.
    PUB | PubMed | Europe PMC
     
  • [15]
    1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1947682
    Giegerich, Robert, Haase, D., and Rehmsmeier, Marc. 1999. “Prediction and visualization of structural switches in RNA”. Pac Symp Biocomput, 126-137.
    PUB | PubMed | Europe PMC
     
  • [14]
    1999 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1620435
    Giegerich, Robert, Kurtz, Stefan, and Stoye, Jens. 1999. “Efficient implementation of lazy suffix trees”. In Algorithm Engineering. 3rd International Workshop, WAE’99 London, UK, July 19–21, 1999 Proceedings, 1668:30-42. LNCS.
    PUB | DOI | WoS
     
  • [13]
    1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1623374
    Evers, Dirk J., and Giegerich, Robert. 1999. “RNA movies: visualizing RNA secondary structure spaces”. BIOINFORMATICS 15 (1): 32-37.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [12]
    1998 | Konferenzbeitrag | PUB-ID: 1883741
    Lorenz, Dieter, and Giegerich, Robert. 1998. “ViSeL: An interactive Virtual Laboratory for DNA Sequencing”. In Tagungsband zum Workshop "Multimedia-Systeme" im Rahmen der GI-Jahrestagung 1998, 53-65. Magdeburg.
    PUB
     
  • [11]
    1997 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383634
    Fuellen, Georg, and Giegerich, Robert. 1997. “International, interdisziplinär und interaaktiv: Der VSNS-Kurs über BioComputing”. In Proceedings: Virtueller Campus, 77-89.
    PUB
     
  • [10]
    1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1627522
    Giegerich, Robert, and Kurtz, Stefan. 1997. “From Ukkonen to McCreight and Weiner: A unifying view of linear-time suffix tree construction”. ALGORITHMICA 19 (3): 331-353.
    PUB | DOI | WoS
     
  • [9]
    1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1639486
    Grüner, Walter, Giegerich, Robert, Strothmann, Dirk, Reidys, Christian, Weber, Jacqueline, Hofacker, Ivo L., Stadler, Peter, and Schuster, Peter. 1996. “Analysis of RNA sequence structure maps by exhaustive enumeration .2. structures of neutral networks and shape space covering”. Monatshefte für Chemie 127 (4): 375-389.
    PUB | DOI | WoS
     
  • [8]
    1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1639477
    Grüner, Walter, Giegerich, Robert, Strothmann, Dirk, Reidys, Christian, Weber, Jacqueline, Hofacker, Ivo L., Stadler, Peter, and Schuster, Peter. 1996. “Analysis of RNA sequence structure maps by exhaustive enumeration .1. Neutral networks”. Monatshefte für Chemie 127 (4): 355-374.
    PUB | DOI | WoS
     
  • [7]
    1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1947921
    Giegerich, Robert, Meyer, Folker, and Schleiermacher, Chris. 1996. “GeneFisher--software support for the detection of postulated genes”. Proc Int Conf Intell Syst Mol Biol 4: 68-77.
    PUB | PubMed | Europe PMC
     
  • [6]
    1995 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1628987
    Giegerich, Robert, and Kurtz, Stefan. 1995. “A comparison of imperative and purely functional suffix tree constructions”. In Science of Computer Programming, 25:187-218. SCIENCE OF COMPUTER PROGRAMMING. ELSEVIER SCIENCE BV.
    PUB | DOI | WoS
     
  • [5]
    1995 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1639513
    Bütow, Bernd, Giegerich, Robert, Ohlebusch, Enno, and Thesing, Stephan. 1995. “A new calculus for semantic matching”. In Programming languages: implementations, logics and programs. 7th international symposium ; proceedings, ed. Manuel Hermenegildo and S. Doaitse Swierstra, 982:81-96. Lecture Notes in Computer Science. Berlin: Springer.
    PUB | WoS
     
  • [4]
    1992 | Report | PUB-ID: 2383632
    Giegerich, Robert. 1992. Embedding Sequence Analysis in the Functional Programming Paradigm - A Feasability Study. Report No. 8. Universität Bielefeld: Technische Fakultät.
    PUB
     
  • [3]
    1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383627
    Giegerich, Robert, and Ohlebusch, Enno. 1991. “An Implicit Representation of Infinite Sequences of Terms”. Bulletin of the EATCS 43: 174-182.
    PUB
     
  • [2]
    1990 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1651134
    Giegerich, Robert. 1990. “CODE SELECTION BY INVERSION OF ORDER-SORTED DERIVORS”. In Theoretical Computer Science, 73:177-211. THEORETICAL COMPUTER SCIENCE. ELSEVIER SCIENCE BV.
    PUB | DOI | WoS
     
  • [1]
    1990 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1651466
    Giegerich, Robert. 1990. “ON THE STRUCTURE OF VERIFIABLE CODE GENERATOR SPECIFICATIONS”, SIGPLAN NOTICES, 25 (6): 1-8.
    PUB | WoS
     

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