27 Publikationen

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  • [27]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914424
    B. Sommer and F. Schreiber, “Integration and virtual reality exploration of biomedical data with CmPI and VANTED”, IT-INFORMATION TECHNOLOGY, vol. 59, 2017, pp. 181-190.
    PUB | DOI | WoS
     
  • [26]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901345
    S.C. Mueller, et al., “From single variants to protein cascades multiscale modeling of single nucleotide variant sets in genetic disorders”, Journal of Biological Chemistry, vol. 291, 2016, pp. 1582-1590.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [25]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704602 OA
    N. Biere, et al., “Towards a 3D Cell Model of Chlamydomonas reinhardtii (Workshop Abstract)”, Proceedings of the CELLmicrocosmos neXt workshop, B. Sommer, ed., Bielefeld: Bielefeld University, 2014, pp.9-10.
    PUB | PDF | DOI
     
  • [24]
    2014 | Konferenzband | Veröffentlicht | PUB-ID: 2704570 OA
    B. Sommer, ed., Proceedings of CELLmicrocosmos neXt 2014, Bielefeld: Bielefeld University, 2014.
    PUB | PDF | DOI
     
  • [23]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704619 OA
    T. Wallmeyer, B. Sommer, and B. Kormeier, “Towards Pathway Prediction and Subcellular Localization by using FraMeTex (Workshop Abstract)”, Proceedings of the CELLmicrocosmos neXt workshop, B. Sommer, ed., Bielefeld: Bielefeld University, 2014, pp.18-19.
    PUB | PDF | DOI
     
  • [22]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704665 OA
    G. Kovanci and B. Sommer, “Towards a Web-based Visualization for the CELLmicrocosmos 4 PathwayIntegration (Workshop Abstract)”, Proceedings of the CELLmicrocosmos neXt workshop, B. Sommer, ed., Bielefeld: Bielefeld University, 2014, pp.14-15.
    PUB | PDF | DOI
     
  • [21]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704586 OA
    O.V. Popik, et al., “Evaluation and Visualization of Pathway Efficiency based on Subcellular Protein Localizations (Workshop Abstract)”, Proceedings of the CELLmicrocosmos neXt workshop, B. Sommer, ed., Bielefeld: Bielefeld University, 2014, pp.9-10.
    PUB | PDF | DOI
     
  • [20]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704580 OA
    B. Sommer, “CELLmicrocosmos X (Workshop Abstract)”, Proceedings of the CELLmicrocosmos neXt workshop, B. Sommer, ed., Bielefeld: Bielefeld University, 2014, pp.5-6.
    PUB | PDF | DOI
     
  • [19]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704564 OA
    B. Sommer and M. Chen, “A novel Lecture Program in Bioinformatics: Interdisciplinary Cell Visualization and Modeling (Workshop Abstract)”, Proceedings of the CELLmicrocosmos neXt workshop, B. Sommer, ed., Bielefeld: 2014, pp.20-21.
    PUB | PDF | DOI
     
  • [18]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710884
    O.V. Popik, et al., “Analysis of signaling networks distributed over intracellular compartments based on protein-protein interactions”, BMC Genomics, vol. 15, 2014, : S7.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [17]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2664859
    G. Lukat, B. Sommer, and J. Krüger, “Membrane simulation analysis using Voronoi tessellation (Conference Abstract)”, Journal of Cheminformatics, Journal of Cheminformatics, vol. 6, Springer Science and Business Media LLC, 2014.
    PUB | DOI
     
  • [16]
    2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2693254
    T. Waltemate, B. Sommer, and M. Botsch, “Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization”, Proceedings of Eurographics Workshop on Visual Computing for Biology and Medicine, Eurographics Association, 2014, pp.89-96.
    PUB | DOI
     
  • [15]
    2014 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2664837
    B. Sommer, “Network Analysis and Integration in a Virtual Cell Environment”, Approaches in Integrative Bioinformatics, M. Chen and R. Hofestädt, eds., Berlin, Heidelberg: Springer Berlin Heidelberg, 2014, pp.275-297.
    PUB | DOI
     
  • [14]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2661812
    B. Sommer, et al., “Stereoscopic cell visualization: from mesoscopic to molecular scale”, Journal of Electronic Imaging, vol. 23, 2014, : 11007.
    PUB | DOI | WoS
     
  • [13]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560817
    B. Sommer, et al., “Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets”, Journal of Bioinformatics and Computational Biology, vol. 11, 2013, : 1340005.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [12]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645319
    G. Lukat, J. Krueger, and B. Sommer, “APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS Trajectories”, Journal Of Chemical Information And Modeling, vol. 53, 2013, pp. 2908-2925.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [11]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576375
    B. Sommer, “Membrane Packing Problems: A short Review on computational Membrane Modeling Methods and Tools”, Computational and Structural Biotechnology Journal, vol. 5, 2013, : e201302014.
    PUB | DOI | PubMed | Europe PMC
     
  • [10]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901699
    R. Hofestädt, et al., “Editorial: JIBtools - a Strategy to Reduce the Bioinformatics Analysis Gap”, Journal of Integrative Bioinformatics, vol. 10, 2013, pp. 226.
    PUB
     
  • [9]
    2012 | Bielefelder E-Dissertation | PUB-ID: 2557380 OA
    B. Sommer, CELLmicrocosmos - Integrative cell modeling at the  molecular, mesoscopic and functional level, Bielefeld: Bielefeld University, 2012.
    PUB | PDF
     
  • [8]
    2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2467408
    S. Rubert, et al., “Grid Workflow Approach using the CELLmicrocosmos 2.2 MembraneEditor and UNICORE to commit and monitor GROMACS Jobs”, CEUR Workshop Proceedings, K.-D. Warzecha and L. Packschies, eds., vol. 826, CEUR-WS, 2012.
    PUB | Download (ext.)
     
  • [7]
    2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2375173
    B. Sommer, et al., “Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes (Conference Abstract)”, Journal of Cheminformatics, Journal of Cheminformatics, vol. 3, Springer Science and Business Media LLC, 2011.
    PUB | DOI
     
  • [6]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289773
    B. Sommer, et al., “CELLmicrocosmos 2.2 Membrane Editor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems”, Journal of Chemical Information and Modeling, vol. 51, 2011, pp. 1165-1182.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [5]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2374757
    B. Sommer, et al., “Visualization and Analysis of a Cardio Vascular Disease-and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches”, Journal of Integrative Bioinformatics, vol. 7, 2010, pp. 148.
    PUB | DOI | PubMed | Europe PMC
     
  • [4]
    2010 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785479 OA
    B. Sommer, et al., “CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes (Conference Abstract)”, Journal of Cheminformatics, Journal of Cheminformatics, vol. 2(Suppl 1):O21, Springer Science and Business Media LLC, 2010.
    PUB | PDF | DOI
     
  • [3]
    2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2002601
    B. Sommer, et al., “CELLMICROCOSMOS 4.1, An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment.”, Presented at the BIOINFORMATICS 2010, Valencia, Spain, INSTICC - Institute for Systems and Technologies of Information, Control and Communication, 2010.
    PUB
     
  • [2]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929144
    B. Sommer, “Membranen für alle”, NACHRICHTEN AUS DER CHEMIE, vol. 58, 2010, pp. 1030-1032.
    PUB | DOI | WoS
     
  • [1]
    2009 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785172 OA
    B. Sommer, T. Dingersen, and S. Schneider, “CELLmicrocosmos 2.1: a software approach for the modelling of three-dimensional PDB membranes (Conference Abstract)”, Chemistry Central Journal, Chemistry Central Journal, vol. 3(Suppl 1):P72, Springer Science and Business Media LLC, 2009.
    PUB | PDF | DOI
     

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