27 Publikationen
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901345Mueller SC, Sommer B, Backes C, et al. From single variants to protein cascades multiscale modeling of single nucleotide variant sets in genetic disorders. Journal of Biological Chemistry. 2016;291(4):1582-1590.PUB | DOI | WoS | PubMed | Europe PMC
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704602Biere N, Doebbe A, Rothe N, Huser T, Kruse O, Sommer B. Towards a 3D Cell Model of Chlamydomonas reinhardtii (Workshop Abstract). In: Sommer B, ed. Proceedings of the CELLmicrocosmos neXt workshop. Bielefeld: Bielefeld University; 2014: 9-10.PUB | PDF | DOI
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704619Wallmeyer T, Sommer B, Kormeier B. Towards Pathway Prediction and Subcellular Localization by using FraMeTex (Workshop Abstract). In: Sommer B, ed. Proceedings of the CELLmicrocosmos neXt workshop. Bielefeld: Bielefeld University; 2014: 18-19.PUB | PDF | DOI
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704665Kovanci G, Sommer B. Towards a Web-based Visualization for the CELLmicrocosmos 4 PathwayIntegration (Workshop Abstract). In: Sommer B, ed. Proceedings of the CELLmicrocosmos neXt workshop. Bielefeld: Bielefeld University; 2014: 14-15.PUB | PDF | DOI
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704586Popik OV, Sommer B, Hofestädt R, Ivanisenko VA. Evaluation and Visualization of Pathway Efficiency based on Subcellular Protein Localizations (Workshop Abstract). In: Sommer B, ed. Proceedings of the CELLmicrocosmos neXt workshop. Bielefeld: Bielefeld University; 2014: 9-10.PUB | PDF | DOI
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704564Sommer B, Chen M. A novel Lecture Program in Bioinformatics: Interdisciplinary Cell Visualization and Modeling (Workshop Abstract). In: Sommer B, ed. Proceedings of the CELLmicrocosmos neXt workshop. Bielefeld; 2014: 20-21.PUB | PDF | DOI
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710884Popik OV, Saik OV, Petrovskiy ED, et al. Analysis of signaling networks distributed over intracellular compartments based on protein-protein interactions. BMC Genomics. 2014;15(Suppl 12): S7.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2664859Lukat G, Sommer B, Krüger J. Membrane simulation analysis using Voronoi tessellation (Conference Abstract). In: Journal of Cheminformatics. Journal of Cheminformatics. Vol 6. Springer Science and Business Media LLC; 2014.PUB | DOI
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2693254Waltemate T, Sommer B, Botsch M. Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization. In: Proceedings of Eurographics Workshop on Visual Computing for Biology and Medicine. Eurographics Association; 2014: 89-96.PUB | DOI
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560817Sommer B, Kormeier B, Demenkov PS, et al. Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets. Journal of Bioinformatics and Computational Biology. 2013;11(01): 1340005.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645319Lukat G, Krueger J, Sommer B. APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS Trajectories. Journal Of Chemical Information And Modeling. 2013;53(11):2908-2925.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576375Sommer B. Membrane Packing Problems: A short Review on computational Membrane Modeling Methods and Tools. Computational and Structural Biotechnology Journal. 2013;5(6): e201302014.PUB | DOI | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901699Hofestädt R, Kormeier B, Lange M, Schreiber F, Sommer B, Weise S. Editorial: JIBtools - a Strategy to Reduce the Bioinformatics Analysis Gap. Journal of Integrative Bioinformatics. 2013;10(1):226.PUB
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2467408Rubert S, Gamroth C, Krüger J, Sommer B. Grid Workflow Approach using the CELLmicrocosmos 2.2 MembraneEditor and UNICORE to commit and monitor GROMACS Jobs. In: Warzecha K-D, Packschies L, eds. CEUR Workshop Proceedings. Vol 826. CEUR-WS; 2012.PUB | Download (ext.)
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2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2375173Sommer B, Dingersen T, Gamroth C, et al. Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes (Conference Abstract). In: Journal of Cheminformatics. Journal of Cheminformatics. Vol 3. Springer Science and Business Media LLC; 2011.PUB | DOI
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289773Sommer B, Dingersen T, Gamroth C, et al. CELLmicrocosmos 2.2 Membrane Editor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems. Journal of Chemical Information and Modeling. 2011;51(5):1165-1182.PUB | DOI | WoS | PubMed | Europe PMC
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2374757Sommer B, Tiys ES, Kormeier B, et al. Visualization and Analysis of a Cardio Vascular Disease-and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. Journal of Integrative Bioinformatics. 2010;7(1):148.PUB | DOI | PubMed | Europe PMC
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2010 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785479Sommer B, Dingersen T, Schneider S, Rubert S, Gamroth C. CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes (Conference Abstract). In: Journal of Cheminformatics. Journal of Cheminformatics. Vol 2(Suppl 1):O21. Springer Science and Business Media LLC; 2010.PUB | PDF | DOI
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2002601Sommer B, Künsemöller J, Sand N, Husemann A, Rumming M, Kormeier B. CELLMICROCOSMOS 4.1, An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment. Presented at the BIOINFORMATICS 2010, Valencia, Spain.PUB
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2009 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785172Sommer B, Dingersen T, Schneider S. CELLmicrocosmos 2.1: a software approach for the modelling of three-dimensional PDB membranes (Conference Abstract). In: Chemistry Central Journal. Chemistry Central Journal. Vol 3(Suppl 1):P72. Springer Science and Business Media LLC; 2009.PUB | PDF | DOI