27 Publikationen

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  • [27]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914424
    Sommer B, Schreiber F. Integration and virtual reality exploration of biomedical data with CmPI and VANTED. IT-INFORMATION TECHNOLOGY. 2017;59(4):181-190.
    PUB | DOI | WoS
     
  • [26]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901345
    Mueller SC, Sommer B, Backes C, et al. From single variants to protein cascades multiscale modeling of single nucleotide variant sets in genetic disorders. Journal of Biological Chemistry. 2016;291(4):1582-1590.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [25]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704602 OA
    Biere N, Doebbe A, Rothe N, Huser T, Kruse O, Sommer B. Towards a 3D Cell Model of Chlamydomonas reinhardtii (Workshop Abstract). In: Sommer B, ed. Proceedings of the CELLmicrocosmos neXt workshop. Bielefeld: Bielefeld University; 2014: 9-10.
    PUB | PDF | DOI
     
  • [24]
    2014 | Konferenzband | Veröffentlicht | PUB-ID: 2704570 OA
    Sommer B, ed. Proceedings of CELLmicrocosmos neXt 2014. Bielefeld: Bielefeld University; 2014.
    PUB | PDF | DOI
     
  • [23]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704619 OA
    Wallmeyer T, Sommer B, Kormeier B. Towards Pathway Prediction and Subcellular Localization by using FraMeTex (Workshop Abstract). In: Sommer B, ed. Proceedings of the CELLmicrocosmos neXt workshop. Bielefeld: Bielefeld University; 2014: 18-19.
    PUB | PDF | DOI
     
  • [22]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704665 OA
    Kovanci G, Sommer B. Towards a Web-based Visualization for the CELLmicrocosmos 4 PathwayIntegration (Workshop Abstract). In: Sommer B, ed. Proceedings of the CELLmicrocosmos neXt workshop. Bielefeld: Bielefeld University; 2014: 14-15.
    PUB | PDF | DOI
     
  • [21]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704586 OA
    Popik OV, Sommer B, Hofestädt R, Ivanisenko VA. Evaluation and Visualization of Pathway Efficiency based on Subcellular Protein Localizations (Workshop Abstract). In: Sommer B, ed. Proceedings of the CELLmicrocosmos neXt workshop. Bielefeld: Bielefeld University; 2014: 9-10.
    PUB | PDF | DOI
     
  • [20]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704580 OA
    Sommer B. CELLmicrocosmos X (Workshop Abstract). In: Sommer B, ed. Proceedings of the CELLmicrocosmos neXt workshop. Bielefeld: Bielefeld University; 2014: 5-6.
    PUB | PDF | DOI
     
  • [19]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704564 OA
    Sommer B, Chen M. A novel Lecture Program in Bioinformatics: Interdisciplinary Cell Visualization and Modeling (Workshop Abstract). In: Sommer B, ed. Proceedings of the CELLmicrocosmos neXt workshop. Bielefeld; 2014: 20-21.
    PUB | PDF | DOI
     
  • [18]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710884
    Popik OV, Saik OV, Petrovskiy ED, et al. Analysis of signaling networks distributed over intracellular compartments based on protein-protein interactions. BMC Genomics. 2014;15(Suppl 12): S7.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [17]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2664859
    Lukat G, Sommer B, Krüger J. Membrane simulation analysis using Voronoi tessellation (Conference Abstract). In: Journal of Cheminformatics. Journal of Cheminformatics. Vol 6. Springer Science and Business Media LLC; 2014.
    PUB | DOI
     
  • [16]
    2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2693254
    Waltemate T, Sommer B, Botsch M. Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization. In: Proceedings of Eurographics Workshop on Visual Computing for Biology and Medicine. Eurographics Association; 2014: 89-96.
    PUB | DOI
     
  • [15]
    2014 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2664837
    Sommer B. Network Analysis and Integration in a Virtual Cell Environment. In: Chen M, Hofestädt R, eds. Approaches in Integrative Bioinformatics. Berlin, Heidelberg: Springer Berlin Heidelberg; 2014: 275-297.
    PUB | DOI
     
  • [14]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2661812
    Sommer B, Bender C, Hoppe T, Gamroth C, Jelonek L. Stereoscopic cell visualization: from mesoscopic to molecular scale. Journal of Electronic Imaging. 2014;23(1): 11007.
    PUB | DOI | WoS
     
  • [13]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560817
    Sommer B, Kormeier B, Demenkov PS, et al. Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets. Journal of Bioinformatics and Computational Biology. 2013;11(01): 1340005.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [12]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645319
    Lukat G, Krueger J, Sommer B. APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS Trajectories. Journal Of Chemical Information And Modeling. 2013;53(11):2908-2925.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [11]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576375
    Sommer B. Membrane Packing Problems: A short Review on computational Membrane Modeling Methods and Tools. Computational and Structural Biotechnology Journal. 2013;5(6): e201302014.
    PUB | DOI | PubMed | Europe PMC
     
  • [10]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901699
    Hofestädt R, Kormeier B, Lange M, Schreiber F, Sommer B, Weise S. Editorial: JIBtools - a Strategy to Reduce the Bioinformatics Analysis Gap. Journal of Integrative Bioinformatics. 2013;10(1):226.
    PUB
     
  • [9]
    2012 | Bielefelder E-Dissertation | PUB-ID: 2557380 OA
    Sommer B. CELLmicrocosmos - Integrative cell modeling at the  molecular, mesoscopic and functional level. Bielefeld: Bielefeld University; 2012.
    PUB | PDF
     
  • [8]
    2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2467408
    Rubert S, Gamroth C, Krüger J, Sommer B. Grid Workflow Approach using the CELLmicrocosmos 2.2 MembraneEditor and UNICORE to commit and monitor GROMACS Jobs. In: Warzecha K-D, Packschies L, eds. CEUR Workshop Proceedings. Vol 826. CEUR-WS; 2012.
    PUB | Download (ext.)
     
  • [7]
    2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2375173
    Sommer B, Dingersen T, Gamroth C, et al. Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes (Conference Abstract). In: Journal of Cheminformatics. Journal of Cheminformatics. Vol 3. Springer Science and Business Media LLC; 2011.
    PUB | DOI
     
  • [6]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289773
    Sommer B, Dingersen T, Gamroth C, et al. CELLmicrocosmos 2.2 Membrane Editor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems. Journal of Chemical Information and Modeling. 2011;51(5):1165-1182.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [5]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2374757
    Sommer B, Tiys ES, Kormeier B, et al. Visualization and Analysis of a Cardio Vascular Disease-and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. Journal of Integrative Bioinformatics. 2010;7(1):148.
    PUB | DOI | PubMed | Europe PMC
     
  • [4]
    2010 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785479 OA
    Sommer B, Dingersen T, Schneider S, Rubert S, Gamroth C. CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes (Conference Abstract). In: Journal of Cheminformatics. Journal of Cheminformatics. Vol 2(Suppl 1):O21. Springer Science and Business Media LLC; 2010.
    PUB | PDF | DOI
     
  • [3]
    2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2002601
    Sommer B, Künsemöller J, Sand N, Husemann A, Rumming M, Kormeier B. CELLMICROCOSMOS 4.1, An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment. Presented at the BIOINFORMATICS 2010, Valencia, Spain.
    PUB
     
  • [2]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929144
    Sommer B. Membranen für alle. NACHRICHTEN AUS DER CHEMIE. 2010;58(10):1030-1032.
    PUB | DOI | WoS
     
  • [1]
    2009 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785172 OA
    Sommer B, Dingersen T, Schneider S. CELLmicrocosmos 2.1: a software approach for the modelling of three-dimensional PDB membranes (Conference Abstract). In: Chemistry Central Journal. Chemistry Central Journal. Vol 3(Suppl 1):P72. Springer Science and Business Media LLC; 2009.
    PUB | PDF | DOI
     

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