PUB - Publikationen an der Universität Bielefeld

Alle markieren

• [34]
  

  2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2988228

  Agrofoglio, Y.C., Iglesias, M.J., Perez-Santangelo, S., de Leone, M.J., Köster, T., Catala, R., Salinas, J., Yanovsky, M., Staiger, D., Mateos, J.: Arginine methylation of SM-LIKE PROTEIN 4 antagonistically affects alternative splicing during Arabidopsis stress responses. Plant Cell. : koae051 (2024).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [33]
  

  2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2986985

  Lewinski, M., Brüggemann, M., Köster, T., Reichel, M., Bergelt, T., Meyer, K., König, J., Zarnack, K., Staiger, D.: Mapping protein-RNA binding in plants with individual-nucleotide-resolution UV cross-linking and immunoprecipitation (plant iCLIP2). Nature Protocols. (2024).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [32]
  

  2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2978193

  Köster, T., Sitte, A.: Plant iCLIP — auf Spurensuche im Transkriptom der Pflanze. BIOspektrum. 29, 174-176 (2023).

  PUB | DOI
   
• [31]
  

  2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2985598

  Lewinski, M., Steffen, A., Kachariya, N., Elgner, M., Schmal, C., Messini, N., Köster, T., Reichel, M., Sattler, M., Zarnack, K., Staiger, D.: Arabidopsis thaliana GLYCINE RICH RNA-BINDING PROTEIN 7 interaction with its iCLIP target LHCB1.1 correlates with changes in RNA stability and circadian oscillation. Plant Journal. (2023).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [30]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965202

  Lüders, J., Winkel, A., Reichel, M., Bitterer, V., Scheibe, M., Widmann, C., Butter, F., Köster, T.: Identification of Pri-miRNA Stem-Loop Interacting Proteins in Plants Using a Modified Version of the Csy4 CRISPR Endonuclease. International Journal of Molecular Sciences. 23, : 8961 (2022).

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [29]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964517

  Zhang, R., Kuo, R., Coulter, M., Calixto, C.P.G., Entizne, J.C., Guo, W., Marquez, Y., Milne, L., Riegler, S., Matsui, A., Tanaka, M., Harvey, S., Gao, Y., WieSSner-Kroh, T., Paniagua, A., Crespi, M., Denby, K., Hur, A.B., Huq, E., Jantsch, M., Jarmolowski, A., Köster, T., Laubinger, S., Li, Q.Q., Gu, L., Seki, M., Staiger, D., Sunkar, R., Szweykowska-Kulinska, Z., Tu, S.-L., Wachter, A., Waugh, R., Xiong, L., Zhang, X.-N., Conesa, A., Reddy, A.S.N., Barta, A., Kalyna, M., Brown, J.W.S.: A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis. Genome biology. 23, : 149 (2022).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [28]
  

  2021 | Preprint | Veröffentlicht | PUB-ID: 2954082

  Arribas-Hernandez, L., Rennie, S., Köster, T., Schon, M., Porcelli, C., Lewinski, M., Enugutti, B., Nodine, M.D., Staiger, D., Andersson, R., Brodersen, P.: Principles of mRNA targeting and regulation via the Arabidopsis m6A-binding proteins ECT2 and ECT3. bioRxiv. (2021).

  PUB | DOI | Preprint
   
• [27]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2959415

  Arribas-Hernández, L., Rennie, S., Köster, T., Porcelli, C., Lewinski, M., Staiger, D., Andersson, R., Brodersen, P.: Principles of mRNA targeting via the Arabidopsis m6A-binding protein ECT2. eLife. 10, : e72375 (2021).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [26]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952670

  Hafner, M., Katsantoni, M., Köster, T., Marks, J., Mukherjee, J., Staiger, D., Ule, J., Zavolan, M.: CLIP and complementary methods. Nature Reviews Methods Primers. 1, : 20 (2021).

  PUB | DOI | WoS
   
• [25]
  

  2021 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2948744

  Köster, T., Staiger, D.: RNA-Binding Protein Immunoprecipitation and High-Throughput Sequencing. In: Sanchez-Serrano, J.J. and Salinas, J. (eds.) Arabidopsis Protocols . Methods in molecular biology . 2200, p. 453-461. Humana, New York (2021).

  PUB | DOI | PubMed | Europe PMC
   
• [24]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942001

  Lewinski, M., Bramkamp, Y., Köster, T., Staiger, D.: SEQing: web-based visualization of iCLIP and RNA-seq data in an interactive python framework. BMC bioinformatics. 21, : 113 (2020).

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [23]
  

  2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2945219

  Köster, T., Staiger, D.: Plant Individual Nucleotide Resolution Cross-Linking and Immunoprecipitation to Characterize RNA-Protein Complexes. Methods in molecular biology (Clifton, N.J.). 2166, 255-267 (2020).

  PUB | DOI | PubMed | Europe PMC
   
• [22]
  

  2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2937585

  Köster, T., Reichel, M., Staiger, D.: CLIP and RNA interactome studies to unravel genome-wide RNA-protein interactions in vivo in Arabidopsis thaliana. Methods (San Diego, Calif.). (2019).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [21]
  

  2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936720

  Reichel, M., Köster, T., Staiger, D.: Marking RNA: m6A writers, readers and functions in Arabidopsis. Journal of molecular cell biology. 11, 899-910 (2019).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [20]
  

  2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2934855

  Lewinski, M., Köster, T.: Systems Approaches to Map In Vivo RNA–Protein Interactions in Arabidopsis thaliana. In: Rajewsky, N., Jurga, S., and Barciszewski, J. (eds.) Systems Biology. RNA Technologies. p. 77-95. Springer International Publishing, Cham (2018).

  PUB | DOI
   
• [19]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919118

  Johansson, M., Köster, T.: On the move through time - a historical review of plant clock research. Plant Biology. 21, 13-20 (2018).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [18]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919455

  Köster, T.: miRNAs - der Hacker-Angriff der Parasiten. Biologie in unserer Zeit. 48, 87-88 (2018).

  PUB | DOI
   
• [17]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918314

  Köster, T., Meyer, K.: Plant Ribonomics: Proteins in Search of RNA Partners. Trends in Plant Science. 23, 352-365 (2018).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [16]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914954

  Meyer, K., Köster, T., Nolte, C., Weinholdt, C., Lewinski, M., Grosse, I., Staiger, D.: Adaptation of iCLIP to plants determines the binding landscape of the clock-regulated RNA-binding protein AtGRP7. Genome Biology. 18, : 204 (2017).

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [15]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914953

  Köster, T.: Volkszählung in der Zelle - wer bindet RNA? Biologie in unserer Zeit. 47, 226-227 (2017).

  PUB | DOI
   
• [14]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911065

  Köster, T., Marondedze, C., Meyer, K., Staiger, D.: RNA-Binding Proteins Revisited – The Emerging Arabidopsis mRNA Interactome. Trends in Plant Science. 22, 512-526 (2017).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [13]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911046

  Foley, S.W., Gosai, S.J., Wang, D., Selamoglu, N., Sollitti, A.C., Köster, T., Steffen, A., Lyons, E., Daldal, F., Garcia, B.A., Staiger, D., Deal, R.B., Gregory, B.D.: A Global View of RNA-Protein Interactions Identifies Post-transcriptional Regulators of Root Hair Cell Fate. Developmental Cell. 41, 204-220.e5 (2017).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [12]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764695

  Meyer, K., Köster, T., Staiger, D.: Pre-mRNA Splicing in Plants: In Vivo Functions of RNA-Binding Proteins Implicated in the Splicing Process. Biomolecules. 5, 1717-1740 (2015).

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [11]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2629103

  Köster, T., Staiger, D.: RNA-Binding Protein Immunoprecipitation from Whole-Cell Extracts. Methods in molecular biology (Clifton, N.J.). 1062, 679-695 (2014).

  PUB | DOI | PubMed | Europe PMC
   
• [10]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631517

  Hackmann, C., Korneli, C., Kutyniok, M., Köster, T., Wiedenlübbert, M., Müller, C., Staiger, D.: Salicylic acid-dependent and -independent impact of an RNA-binding protein on plant immunity. Plant, Cell & Environment. 37, 696-706 (2014).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [9]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709993

  Meyer, K., Köster, T., Staiger, D.: Unraveling post-transcriptional networks: Analysis of RNA-protein interactions with RNA immunoprecipitation. Biotechnologia. Journal of Biotechnology, Computational Biology and Bionanotechnology. 95, 43 (2014).

  PUB | DOI
   
• [8]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694724

  Köster, T., Meyer, K., Weinholdt, C., Smith, L.M., Lummer, M., Speth, C., Grosse, I., Weigel, D., Staiger, D.: Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis. Nucleic acids research. 42, 9925-9936 (2014).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [7]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676604

  Köster, T., Haas, M., Staiger, D.: The RIPper Case: Identification of RNA-Binding Protein Targets by RNA Immunoprecipitation. Methods in molecular biology (Clifton, N.J.). 1158, 107-121 (2014).

  PUB | DOI | PubMed | Europe PMC
   
• [6]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2709933

  Meyer, K., Köster, T., Staiger, D.: Unraveling post-tramscriptional networks: Analysis of RNA-protein interactions with RNA immunoprecipitation. BioTechnologia. 95, 43-43 (2014).

  PUB
   
• [5]
  

  2014 | Dissertation | PUB-ID: 2717324

  Köster, T.: Funktion von Ribonukleoproteinkomplexen in der posttranskriptionellen Regulation und microRNA-Biogenese. Bielefeld (2014).

  PUB
   
• [4]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709991

  Köster, T., Brown, J.W.S., Staiger, D.: Jenseits des Genoms – Alternatives Spleißen erhöht die Vielfalt des Transkriptoms. Naturwissenschaftliche Rundschau. 67, 566-571 (2014).

  PUB
   
• [3]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548847

  Streitner, C., Köster, T., Simpson, C.G., Shaw, P., Danisman, S., Brown, J.W.S., Staiger, D.: An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana. Nucleic acids research. 40, 11240-11255 (2012).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [2]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003474

  Staiger, D., Köster, T.: Spotlight on post-transcriptional control in the circadian system. Cellular and Molecular Life Sciences. 68, 71-83 (2011).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [1]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2438856

  Staiger, D., Köster, T.: Timing is everything - Die Innere Uhr der Pflanzen. Labor & More. 5, 40-41 (2009).

  PUB | PDF | Download (ext.)