33 Publikationen

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  • [33]
    2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2986985
    M. Lewinski, et al., “Mapping protein-RNA binding in plants with individual-nucleotide-resolution UV cross-linking and immunoprecipitation (plant iCLIP2)”, Nature Protocols, 2024.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [32]
    2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2985598
    M. Lewinski, et al., “Arabidopsis thaliana GLYCINE RICH RNA-BINDING PROTEIN 7 interaction with its iCLIP target LHCB1.1 correlates with changes in RNA stability and circadian oscillation”, Plant Journal, 2023.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [31]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2978193
    T. Köster and A. Sitte, “Plant iCLIP — auf Spurensuche im Transkriptom der Pflanze”, BIOspektrum, vol. 29, 2023, pp. 174-176.
    PUB | DOI
     
  • [30]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965202 OA
    J. Lüders, et al., “Identification of Pri-miRNA Stem-Loop Interacting Proteins in Plants Using a Modified Version of the Csy4 CRISPR Endonuclease”, International Journal of Molecular Sciences, vol. 23, 2022, : 8961.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [29]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964517
    R. Zhang, et al., “A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis”, Genome biology, vol. 23, 2022, : 149.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [28]
    2021 | Preprint | Veröffentlicht | PUB-ID: 2954082
    L. Arribas-Hernandez, et al., “Principles of mRNA targeting and regulation via the Arabidopsis m6A-binding proteins ECT2 and ECT3”, bioRxiv, 2021.
    PUB | DOI | Preprint
     
  • [27]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2959415
    L. Arribas-Hernández, et al., “Principles of mRNA targeting via the Arabidopsis m6A-binding protein ECT2”, eLife, vol. 10, 2021, : e72375.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [26]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952670
    M. Hafner, et al., “CLIP and complementary methods”, Nature Reviews Methods Primers, vol. 1, 2021, : 20.
    PUB | DOI | WoS
     
  • [25]
    2021 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2948744
    T. Köster and D. Staiger, “RNA-Binding Protein Immunoprecipitation and High-Throughput Sequencing”, Arabidopsis Protocols , J.J. Sanchez-Serrano and J. Salinas, eds., Methods in molecular biology , vol. 2200, New York: Humana, 2021, pp.453-461.
    PUB | DOI | PubMed | Europe PMC
     
  • [24]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942001 OA
    M. Lewinski, et al., “SEQing: web-based visualization of iCLIP and RNA-seq data in an interactive python framework.”, BMC bioinformatics, vol. 21, 2020, : 113.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [23]
    2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2945219
    T. Köster and D. Staiger, “Plant Individual Nucleotide Resolution Cross-Linking and Immunoprecipitation to Characterize RNA-Protein Complexes.”, Methods in molecular biology (Clifton, N.J.), vol. 2166, 2020, pp. 255-267.
    PUB | DOI | PubMed | Europe PMC
     
  • [22]
    2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2937585
    T. Köster, M. Reichel, and D. Staiger, “CLIP and RNA interactome studies to unravel genome-wide RNA-protein interactions in vivo in Arabidopsis thaliana.”, Methods (San Diego, Calif.), 2019.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [21]
    2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936720
    M. Reichel, T. Köster, and D. Staiger, “Marking RNA: m6A writers, readers and functions in Arabidopsis”, Journal of molecular cell biology, vol. 11, 2019, pp. 899-910.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [20]
    2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2934855
    M. Lewinski and T. Köster, “Systems Approaches to Map In Vivo RNA–Protein Interactions in Arabidopsis thaliana”, Systems Biology, N. Rajewsky, S. Jurga, and J. Barciszewski, eds., RNA Technologies, Cham: Springer International Publishing, 2018, pp.77-95.
    PUB | DOI
     
  • [19]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919118
    M. Johansson and T. Köster, “On the move through time - a historical review of plant clock research”, Plant Biology, vol. 21, 2018, pp. 13-20.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [18]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919455
    T. Köster, “miRNAs - der Hacker-Angriff der Parasiten”, Biologie in unserer Zeit, vol. 48, 2018, pp. 87-88.
    PUB | DOI
     
  • [17]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918314
    T. Köster and K. Meyer, “Plant Ribonomics: Proteins in Search of RNA Partners”, Trends in Plant Science, vol. 23, 2018, pp. 352-365.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [16]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914954 OA
    K. Meyer, et al., “Adaptation of iCLIP to plants determines the binding landscape of the clock-regulated RNA-binding protein AtGRP7”, Genome Biology, vol. 18, 2017, : 204.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [15]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914953
    T. Köster, “Volkszählung in der Zelle - wer bindet RNA?”, Biologie in unserer Zeit, vol. 47, 2017, pp. 226-227.
    PUB | DOI
     
  • [14]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911065
    T. Köster, et al., “RNA-Binding Proteins Revisited – The Emerging Arabidopsis mRNA Interactome”, Trends in Plant Science, vol. 22, 2017, pp. 512-526.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [13]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911046
    S.W. Foley, et al., “A Global View of RNA-Protein Interactions Identifies Post-transcriptional Regulators of Root Hair Cell Fate”, Developmental Cell, vol. 41, 2017, pp. 204-220.e5.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [12]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764695 OA
    K. Meyer, T. Köster, and D. Staiger, “Pre-mRNA Splicing in Plants: In Vivo Functions of RNA-Binding Proteins Implicated in the Splicing Process”, Biomolecules, vol. 5, 2015, pp. 1717-1740.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [11]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2629103
    T. Köster and D. Staiger, “RNA-Binding Protein Immunoprecipitation from Whole-Cell Extracts”, Methods in molecular biology (Clifton, N.J.), vol. 1062, 2014, pp. 679-695.
    PUB | DOI | PubMed | Europe PMC
     
  • [10]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631517
    C. Hackmann, et al., “Salicylic acid-dependent and -independent impact of an RNA-binding protein on plant immunity”, Plant, Cell & Environment, vol. 37, 2014, pp. 696-706.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [9]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709993
    K. Meyer, T. Köster, and D. Staiger, “Unraveling post-transcriptional networks: Analysis of RNA-protein interactions with RNA immunoprecipitation”, Biotechnologia. Journal of Biotechnology, Computational Biology and Bionanotechnology, vol. 95, 2014, pp. 43.
    PUB | DOI
     
  • [8]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694724
    T. Köster, et al., “Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis”, Nucleic acids research, vol. 42, 2014, pp. 9925-9936.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [7]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676604
    T. Köster, M. Haas, and D. Staiger, “The RIPper Case: Identification of RNA-Binding Protein Targets by RNA Immunoprecipitation”, Methods in molecular biology (Clifton, N.J.), vol. 1158, 2014, pp. 107-121.
    PUB | DOI | PubMed | Europe PMC
     
  • [6]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2709933
    K. Meyer, T. Köster, and D. Staiger, “Unraveling post-tramscriptional networks: Analysis of RNA-protein interactions with RNA immunoprecipitation”, BioTechnologia, vol. 95, 2014, pp. 43-43.
    PUB
     
  • [5]
    2014 | Dissertation | PUB-ID: 2717324
    T. Köster, Funktion von Ribonukleoproteinkomplexen in der posttranskriptionellen Regulation und microRNA-Biogenese, Bielefeld: 2014.
    PUB
     
  • [4]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709991
    T. Köster, J.W.S. Brown, and D. Staiger, “Jenseits des Genoms – Alternatives Spleißen erhöht die Vielfalt des Transkriptoms”, Naturwissenschaftliche Rundschau, vol. 67, 2014, pp. 566-571.
    PUB
     
  • [3]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548847
    C. Streitner, et al., “An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana”, Nucleic acids research, vol. 40, 2012, pp. 11240-11255.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [2]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003474
    D. Staiger and T. Köster, “Spotlight on post-transcriptional control in the circadian system”, Cellular and Molecular Life Sciences, vol. 68, 2011, pp. 71-83.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [1]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2438856 OA
    D. Staiger and T. Köster, “Timing is everything - Die Innere Uhr der Pflanzen”, Labor & More, vol. 5, 2009, pp. 40-41.
    PUB | PDF | Download (ext.)
     

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