33 Publikationen

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  • [33]
    2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2986985
    Lewinski, M., et al., 2024. Mapping protein-RNA binding in plants with individual-nucleotide-resolution UV cross-linking and immunoprecipitation (plant iCLIP2). Nature Protocols.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [32]
    2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2985598
    Lewinski, M., et al., 2023. Arabidopsis thaliana GLYCINE RICH RNA-BINDING PROTEIN 7 interaction with its iCLIP target LHCB1.1 correlates with changes in RNA stability and circadian oscillation. Plant Journal.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [31]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2978193
    Köster, T., & Sitte, A., 2023. Plant iCLIP — auf Spurensuche im Transkriptom der Pflanze. BIOspektrum, 29(2), p 174-176.
    PUB | DOI
     
  • [30]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965202 OA
    Lüders, J., et al., 2022. Identification of Pri-miRNA Stem-Loop Interacting Proteins in Plants Using a Modified Version of the Csy4 CRISPR Endonuclease. International Journal of Molecular Sciences, 23(16): 8961.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [29]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964517
    Zhang, R., et al., 2022. A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis. Genome biology, 23(1): 149.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [28]
    2021 | Preprint | Veröffentlicht | PUB-ID: 2954082
    Arribas-Hernandez, L., et al., 2021. Principles of mRNA targeting and regulation via the Arabidopsis m6A-binding proteins ECT2 and ECT3. bioRxiv.
    PUB | DOI | Preprint
     
  • [27]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2959415
    Arribas-Hernández, L., et al., 2021. Principles of mRNA targeting via the Arabidopsis m6A-binding protein ECT2. eLife, 10: e72375.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [26]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952670
    Hafner, M., et al., 2021. CLIP and complementary methods. Nature Reviews Methods Primers, 1(1): 20.
    PUB | DOI | WoS
     
  • [25]
    2021 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2948744
    Köster, T., & Staiger, D., 2021. RNA-Binding Protein Immunoprecipitation and High-Throughput Sequencing. In J. J. Sanchez-Serrano & J. Salinas, eds. Arabidopsis Protocols . Methods in molecular biology . no.2200 New York: Humana, pp. 453-461.
    PUB | DOI | PubMed | Europe PMC
     
  • [24]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942001 OA
    Lewinski, M., et al., 2020. SEQing: web-based visualization of iCLIP and RNA-seq data in an interactive python framework. BMC bioinformatics, 21(1): 113.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [23]
    2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2945219
    Köster, T., & Staiger, D., 2020. Plant Individual Nucleotide Resolution Cross-Linking and Immunoprecipitation to Characterize RNA-Protein Complexes. Methods in molecular biology (Clifton, N.J.), 2166, p 255-267.
    PUB | DOI | PubMed | Europe PMC
     
  • [22]
    2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2937585
    Köster, T., Reichel, M., & Staiger, D., 2019. CLIP and RNA interactome studies to unravel genome-wide RNA-protein interactions in vivo in Arabidopsis thaliana. Methods (San Diego, Calif.).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [21]
    2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936720
    Reichel, M., Köster, T., & Staiger, D., 2019. Marking RNA: m6A writers, readers and functions in Arabidopsis. Journal of molecular cell biology, 11(10), p 899-910.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [20]
    2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2934855
    Lewinski, M., & Köster, T., 2018. Systems Approaches to Map In Vivo RNA–Protein Interactions in Arabidopsis thaliana. In N. Rajewsky, S. Jurga, & J. Barciszewski, eds. Systems Biology. RNA Technologies. Cham: Springer International Publishing, pp. 77-95.
    PUB | DOI
     
  • [19]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919118
    Johansson, M., & Köster, T., 2018. On the move through time - a historical review of plant clock research. Plant Biology, 21(S1), p 13-20.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [18]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919455
    Köster, T., 2018. miRNAs - der Hacker-Angriff der Parasiten. Biologie in unserer Zeit, 48(2), p 87-88.
    PUB | DOI
     
  • [17]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918314
    Köster, T., & Meyer, K., 2018. Plant Ribonomics: Proteins in Search of RNA Partners. Trends in Plant Science, 23(4), p 352-365.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [16]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914954 OA
    Meyer, K., et al., 2017. Adaptation of iCLIP to plants determines the binding landscape of the clock-regulated RNA-binding protein AtGRP7. Genome Biology, 18(1): 204.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [15]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914953
    Köster, T., 2017. Volkszählung in der Zelle - wer bindet RNA? Biologie in unserer Zeit, 47(4), p 226-227.
    PUB | DOI
     
  • [14]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911065
    Köster, T., et al., 2017. RNA-Binding Proteins Revisited – The Emerging Arabidopsis mRNA Interactome. Trends in Plant Science, 22(6), p 512-526.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [13]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911046
    Foley, S.W., et al., 2017. A Global View of RNA-Protein Interactions Identifies Post-transcriptional Regulators of Root Hair Cell Fate. Developmental Cell, 41(2), p 204-220.e5.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [12]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764695 OA
    Meyer, K., Köster, T., & Staiger, D., 2015. Pre-mRNA Splicing in Plants: In Vivo Functions of RNA-Binding Proteins Implicated in the Splicing Process. Biomolecules, 5(3), p 1717-1740.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [11]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2629103
    Köster, T., & Staiger, D., 2014. RNA-Binding Protein Immunoprecipitation from Whole-Cell Extracts. Methods in molecular biology (Clifton, N.J.), 1062, p 679-695.
    PUB | DOI | PubMed | Europe PMC
     
  • [10]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631517
    Hackmann, C., et al., 2014. Salicylic acid-dependent and -independent impact of an RNA-binding protein on plant immunity. Plant, Cell & Environment, 37(3), p 696-706.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [9]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709993
    Meyer, K., Köster, T., & Staiger, D., 2014. Unraveling post-transcriptional networks: Analysis of RNA-protein interactions with RNA immunoprecipitation. Biotechnologia. Journal of Biotechnology, Computational Biology and Bionanotechnology, 95(1), p 43.
    PUB | DOI
     
  • [8]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694724
    Köster, T., et al., 2014. Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis. Nucleic acids research, 42(15), p 9925-9936.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [7]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676604
    Köster, T., Haas, M., & Staiger, D., 2014. The RIPper Case: Identification of RNA-Binding Protein Targets by RNA Immunoprecipitation. Methods in molecular biology (Clifton, N.J.), 1158, p 107-121.
    PUB | DOI | PubMed | Europe PMC
     
  • [6]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2709933
    Meyer, K., Köster, T., & Staiger, D., 2014. Unraveling post-tramscriptional networks: Analysis of RNA-protein interactions with RNA immunoprecipitation. BioTechnologia, 95(1), p 43-43.
    PUB
     
  • [5]
    2014 | Dissertation | PUB-ID: 2717324
    Köster, T., 2014. Funktion von Ribonukleoproteinkomplexen in der posttranskriptionellen Regulation und microRNA-Biogenese, Bielefeld.
    PUB
     
  • [4]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709991
    Köster, T., Brown, J.W.S., & Staiger, D., 2014. Jenseits des Genoms – Alternatives Spleißen erhöht die Vielfalt des Transkriptoms. Naturwissenschaftliche Rundschau, 67(11), p 566-571.
    PUB
     
  • [3]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548847
    Streitner, C., et al., 2012. An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana. Nucleic acids research, 40(22), p 11240-11255.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [2]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003474
    Staiger, D., & Köster, T., 2011. Spotlight on post-transcriptional control in the circadian system. Cellular and Molecular Life Sciences, 68(1), p 71-83.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [1]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2438856 OA
    Staiger, D., & Köster, T., 2009. Timing is everything - Die Innere Uhr der Pflanzen. Labor & More, 5, p 40-41.
    PUB | PDF | Download (ext.)
     

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