PUB - Publikationen an der Universität Bielefeld

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• [34]
  

  2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2988228

  Y. C. Agrofoglio, M. J. Iglesias, S. Perez-Santangelo, M. J. de Leone, T. Köster, R. Catala, J. Salinas, M. Yanovsky, D. Staiger, and J. Mateos, “Arginine methylation of SM-LIKE PROTEIN 4 antagonistically affects alternative splicing during Arabidopsis stress responses”, Plant Cell, 2024, : koae051.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [33]
  

  2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2986985

  M. Lewinski, M. Brüggemann, T. Köster, M. Reichel, T. Bergelt, K. Meyer, J. König, K. Zarnack, and D. Staiger, “Mapping protein-RNA binding in plants with individual-nucleotide-resolution UV cross-linking and immunoprecipitation (plant iCLIP2)”, Nature Protocols, 2024.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [32]
  

  2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2978193

  T. Köster, and A. Sitte, “Plant iCLIP — auf Spurensuche im Transkriptom der Pflanze”, BIOspektrum, 2023, 29, 174-176.

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• [31]
  

  2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2985598

  M. Lewinski, A. Steffen, N. Kachariya, M. Elgner, C. Schmal, N. Messini, T. Köster, M. Reichel, M. Sattler, K. Zarnack, et al., “Arabidopsis thaliana GLYCINE RICH RNA-BINDING PROTEIN 7 interaction with its iCLIP target LHCB1.1 correlates with changes in RNA stability and circadian oscillation”, Plant Journal, 2023.

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• [30]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965202

  J. Lüders, A. Winkel, M. Reichel, V. Bitterer, M. Scheibe, C. Widmann, F. Butter, and T. Köster, “Identification of Pri-miRNA Stem-Loop Interacting Proteins in Plants Using a Modified Version of the Csy4 CRISPR Endonuclease”, International Journal of Molecular Sciences, 2022, 23, : 8961.

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• [29]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964517

  R. Zhang, R. Kuo, M. Coulter, C. P. G. Calixto, J. C. Entizne, W. Guo, Y. Marquez, L. Milne, S. Riegler, A. Matsui, et al., “A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis”, Genome biology, 2022, 23, : 149.

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• [28]
  

  2021 | Preprint | Veröffentlicht | PUB-ID: 2954082

  L. Arribas-Hernandez, S. Rennie, T. Köster, M. Schon, C. Porcelli, M. Lewinski, B. Enugutti, M. D. Nodine, D. Staiger, R. Andersson, et al., “Principles of mRNA targeting and regulation via the Arabidopsis m6A-binding proteins ECT2 and ECT3”, bioRxiv, 2021.

  PUB | DOI | Preprint
   
• [27]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2959415

  L. Arribas-Hernández, S. Rennie, T. Köster, C. Porcelli, M. Lewinski, D. Staiger, R. Andersson, and P. Brodersen, “Principles of mRNA targeting via the Arabidopsis m6A-binding protein ECT2”, eLife, 2021, 10, : e72375.

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• [26]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952670

  M. Hafner, M. Katsantoni, T. Köster, J. Marks, J. Mukherjee, D. Staiger, J. Ule, and M. Zavolan, “CLIP and complementary methods”, Nature Reviews Methods Primers, 2021, 1, : 20.

  PUB | DOI | WoS
   
• [25]
  

  2021 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2948744

  T. Köster, and D. Staiger, in Arabidopsis Protocols (Eds.: J.J. Sanchez-Serrano, J. Salinas), Humana, New York, 2021, p. 453-461.

  PUB | DOI | PubMed | Europe PMC
   
• [24]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942001

  M. Lewinski, Y. Bramkamp, T. Köster, and D. Staiger, “SEQing: web-based visualization of iCLIP and RNA-seq data in an interactive python framework.”, BMC bioinformatics, 2020, 21, : 113.

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• [23]
  

  2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2945219

  T. Köster, and D. Staiger, “Plant Individual Nucleotide Resolution Cross-Linking and Immunoprecipitation to Characterize RNA-Protein Complexes.”, Methods in molecular biology (Clifton, N.J.), 2020, 2166, 255-267.

  PUB | DOI | PubMed | Europe PMC
   
• [22]
  

  2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2937585

  T. Köster, M. Reichel, and D. Staiger, “CLIP and RNA interactome studies to unravel genome-wide RNA-protein interactions in vivo in Arabidopsis thaliana.”, Methods (San Diego, Calif.), 2019.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [21]
  

  2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936720

  M. Reichel, T. Köster, and D. Staiger, “Marking RNA: m6A writers, readers and functions in Arabidopsis”, Journal of molecular cell biology, 2019, 11, 899-910.

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• [20]
  

  2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2934855

  M. Lewinski, and T. Köster, in Systems Biology (Eds.: N. Rajewsky, S. Jurga, J. Barciszewski), Springer International Publishing, Cham, 2018, p. 77-95.

  PUB | DOI
   
• [19]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919118

  M. Johansson, and T. Köster, “On the move through time - a historical review of plant clock research”, Plant Biology, 2018, 21, 13-20.

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• [18]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919455

  T. Köster, “miRNAs - der Hacker-Angriff der Parasiten”, Biologie in unserer Zeit, 2018, 48, 87-88.

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• [17]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918314

  T. Köster, and K. Meyer, “Plant Ribonomics: Proteins in Search of RNA Partners”, Trends in Plant Science, 2018, 23, 352-365.

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• [16]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914954

  K. Meyer, T. Köster, C. Nolte, C. Weinholdt, M. Lewinski, I. Grosse, and D. Staiger, “Adaptation of iCLIP to plants determines the binding landscape of the clock-regulated RNA-binding protein AtGRP7”, Genome Biology, 2017, 18, : 204.

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• [15]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914953

  T. Köster, “Volkszählung in der Zelle - wer bindet RNA?”, Biologie in unserer Zeit, 2017, 47, 226-227.

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• [14]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911065

  T. Köster, C. Marondedze, K. Meyer, and D. Staiger, “RNA-Binding Proteins Revisited – The Emerging Arabidopsis mRNA Interactome”, Trends in Plant Science, 2017, 22, 512-526.

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• [13]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911046

  S. W. Foley, S. J. Gosai, D. Wang, N. Selamoglu, A. C. Sollitti, T. Köster, A. Steffen, E. Lyons, F. Daldal, B. A. Garcia, et al., “A Global View of RNA-Protein Interactions Identifies Post-transcriptional Regulators of Root Hair Cell Fate”, Developmental Cell, 2017, 41, 204-220.e5.

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• [12]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764695

  K. Meyer, T. Köster, and D. Staiger, “Pre-mRNA Splicing in Plants: In Vivo Functions of RNA-Binding Proteins Implicated in the Splicing Process”, Biomolecules, 2015, 5, 1717-1740.

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• [11]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2629103

  T. Köster, and D. Staiger, “RNA-Binding Protein Immunoprecipitation from Whole-Cell Extracts”, Methods in molecular biology (Clifton, N.J.), 2014, 1062, 679-695.

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• [10]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631517

  C. Hackmann, C. Korneli, M. Kutyniok, T. Köster, M. Wiedenlübbert, C. Müller, and D. Staiger, “Salicylic acid-dependent and -independent impact of an RNA-binding protein on plant immunity”, Plant, Cell & Environment, 2014, 37, 696-706.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [9]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709993

  K. Meyer, T. Köster, and D. Staiger, “Unraveling post-transcriptional networks: Analysis of RNA-protein interactions with RNA immunoprecipitation”, Biotechnologia. Journal of Biotechnology, Computational Biology and Bionanotechnology, 2014, 95, 43.

  PUB | DOI
   
• [8]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694724

  T. Köster, K. Meyer, C. Weinholdt, L. M. Smith, M. Lummer, C. Speth, I. Grosse, D. Weigel, and D. Staiger, “Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis”, Nucleic acids research, 2014, 42, 9925-9936.

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• [7]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676604

  T. Köster, M. Haas, and D. Staiger, “The RIPper Case: Identification of RNA-Binding Protein Targets by RNA Immunoprecipitation”, Methods in molecular biology (Clifton, N.J.), 2014, 1158, 107-121.

  PUB | DOI | PubMed | Europe PMC
   
• [6]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2709933

  K. Meyer, T. Köster, and D. Staiger, “Unraveling post-tramscriptional networks: Analysis of RNA-protein interactions with RNA immunoprecipitation”, BioTechnologia, 2014, 95, 43-43.

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• [5]
  

  2014 | Dissertation | PUB-ID: 2717324

  T. Köster, Funktion von Ribonukleoproteinkomplexen in der posttranskriptionellen Regulation und microRNA-Biogenese, Bielefeld, 2014.

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• [4]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709991

  T. Köster, J. W. S. Brown, and D. Staiger, “Jenseits des Genoms – Alternatives Spleißen erhöht die Vielfalt des Transkriptoms”, Naturwissenschaftliche Rundschau, 2014, 67, 566-571.

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• [3]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548847

  C. Streitner, T. Köster, C. G. Simpson, P. Shaw, S. Danisman, J. W. S. Brown, and D. Staiger, “An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana”, Nucleic acids research, 2012, 40, 11240-11255.

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• [2]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003474

  D. Staiger, and T. Köster, “Spotlight on post-transcriptional control in the circadian system”, Cellular and Molecular Life Sciences, 2011, 68, 71-83.

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• [1]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2438856

  D. Staiger, and T. Köster, “Timing is everything - Die Innere Uhr der Pflanzen”, Labor & More, 2009, 5, 40-41.

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