Tim Wilhelm Nattkemper

tim.nattkemper@uni-bielefeld.de
ORCID logo https://orcid.org/0000-0002-7986-1158

PEVZ-ID
11602

207 Publikationen

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  • [207]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2984580
    Rogers, A. D., Appiah-Madson, H., Ardron, J. A., Bax, N. J., Bhadury, P., Brandt, A., Buttigieg, P. - L., De Clerck, O., Delgado, C., Distel, D. L., et al. (2023). Accelerating ocean species discovery and laying the foundations for the future of marine biodiversity research and monitoring. Frontiers in Marine Science 10:1224471.
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  • [206]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2981135 OA
    van Kevelaer, R., Langenkämper, D., Nilssen, I., Buhl-Mortensen, P., and Nattkemper, T. W. (2023). A data science approach for multi-sensor marine observatory data monitoring cold water corals (Paragorgia arborea) in two campaigns. PLOS ONE 18:e0282723.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [205]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2979717
    Momber, A. W., Langenkämper, D., Möller, T., and Nattkemper, T. W. (2023). The exploration and annotation of large amounts of visual inspection data for protective coating systems on stationary marine steel structures. Ocean Engineering 278:114337.
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  • [204]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2969165 OA
    Kloster, M., Burfeid-Castellanos, A. M., Langenkämper, D., Nattkemper, T. W., and Beszteri, B. (2023). Improving deep learning-based segmentation of diatoms in gigapixel-sized virtual slides by object-based tile positioning and object integrity constraint. PLOS ONE 18:e0272103.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [203]
    2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2968512
    Momber, A., Langenkämper, D., Möller, T., and Nattkemper, T. W. (2023). Eine Online-Plattform für die Verarbeitung digitaler visueller Daten zur Zustandsbeschreibung von Beschichtungssystemen an maritimen Stahlbauten. Stahlbau .
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  • [202]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965093 OA
    Langenkämper, D., Mogstad, A. A., Hansen, I. M., Baussant, T., Bergsagel, O., Nilssen, I., Frost, T. K., and Nattkemper, T. W. (2022). Exploring time series of hyperspectral images for cold water coral stress response analysis. PLoS ONE 17:e0272408.
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  • [201]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964556 OA
    Tan, M., Langenkämper, D., and Nattkemper, T. W. (2022). The Impact of Data Augmentations on Deep Learning-Based Marine Object Classification in Benthic Image Transects. Sensors 22:5383.
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  • [200]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964311 OA
    Tzanakis, K., Nattkemper, T. W., Niehaus, K., and Albaum, S. (2022). MetHoS: a platform for large-scale processing, storage and analysis of metabolomics data. BMC Bioinformatics 23:267.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [199]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966492 OA
    Burfeid-Castellanos, A. M., Kloster, M., Beszteri, S., Postel, U., Spyra, M., Zurowietz, M., Nattkemper, T. W., and Beszteri, B. (2022). A Digital Light Microscopic Method for Diatom Surveys Using Embedded Acid-Cleaned Samples. Water 14:3332.
    PUB | PDF | DOI | Download (ext.) | WoS | Preprint
     
  • [198]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964509
    Schoening, T., Durden, J. M., Faber, C., Felden, J., Heger, K., Hoving, H. - J. T., Kiko, R., Koser, K., Krammer, C., Kwasnitschka, T., et al. (2022). Making marine image data FAIR. Scientific data 9:414.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [197]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964756
    Schoening, T., Durden, J. M., Faber, C., Felden, J., Heger, K., Hoving, H. - J. T., Kiko, R., Koser, K., Krammer, C., Kwasnitschka, T., et al. (2022). Publisher Correction: Making marine image data FAIR. Scientific Data 9:445.
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  • [196]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2962701
    Momber, A. W., Nattkemper, T. W., Langenkämper, D., Möller, T., Bruen, D., Schaumann, P., and Shojai, S. (2022). Corrigendum to “A data-based model for condition monitoring and maintenance planning for protective coating systems for wind tower structures” [Renew. Energy 186 (2022) 957–973]. Renewable Energy 188, 1184.
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  • [195]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2960547
    Momber, A. W., Nattkemper, T. W., Langenkämper, D., Möller, T., Brün, D., Schaumann, P., and Shojai, S. (2022). A data-based model for condition monitoring and maintenance planning for protective coating systems for wind tower structures. Renewable Energy.
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  • [194]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2959631 OA
    Zurowietz, M., and Nattkemper, T. W. (2021). Current Trends and Future Directions of Large Scale Image and Video Annotation: Observations From Four Years of BIIGLE 2.0. Frontiers in Marine Science 8:760036.
    PUB | Dateien verfügbar | DOI | Download (ext.) | WoS
     
  • [193]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952736 OA
    Canals, M., Pham, C. K., Bergmann, M., Gutow, L., Hanke, G., van Sebille, E., Angiolillo, M., Buhl-Mortensen, L., Cau, A., Ioakeimidis, C., et al. (2021). The quest for seafloor macrolitter: a critical review of background knowledge, current methods and future prospects. Environmental Research Letters 16:023001.
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  • [192]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2960196
    Momber, A. W., Möller, T., Langenkämper, D., Nattkemper, T. W., and Bruen, D. (2021). A Digital Twin concept for the prescriptive maintenance of protective coating systems on wind turbine structures. Wind Engineering:0309524X211060550.
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  • [191]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2949959
    Muskat, L., Kerkhoff, Y., Humbert, P., Nattkemper, T. W., Eilenberg, J., and Patel, A. V. (2021). Image analysis-based quantification of fungal sporulation by automatic conidia counting and gray value correlation. MethodsX:101218.
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  • [190]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956291
    Momber, A., Nattkemper, T. W., Langenkämper, D., Möller, T., Bruen, D., Schaumann, P., and Shojai, S. (2021). Digitalisierung und Verarbeitung von Sensordaten für die Zustandsbewertung von Oberflächenschutzsystemen stählerner Türme von Onshore-Windenergieanlagen. Stahlbau 90, 528-541.
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  • [189]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2951226 OA
    Wüllems, K., Zurowietz, A., Zurowietz, M., Schneider, R., Bednarz, H., Niehaus, K., and Nattkemper, T. W. (2021). Fast Visual Exploration of Mass Spectrometry Images with Interactive Dynamic Spectral Similarity Pseudocoloring. Scientific Reports 11:4606.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [188]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950877 OA
    Möller, T., and Nattkemper, T. W. (2021). ALMI - A Generic Active Learning System for Computational Object Classification in Marine Observation Images. Sensors 21:1134.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [187]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942079 OA
    Gemeinholzer, B., Vences, M., Beszteri, B., Bruy, T., Felden, J., Kostadinov, I., Mirailes, A., Nattkemper, T. W., Printzen, C., Renz, J., et al. (2020). Data storage and data re-use in taxonomy-the need for improved storage and accessibility of heterogeneous data. ORGANISMS DIVERSITY & EVOLUTION 20, 1-8.
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  • [186]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945723 OA
    Kloster, M., Langenkämper, D., Zurowietz, M., Beszteri, B., and Nattkemper, T. W. (2020). Deep learning-based diatom taxonomy on virtual slides. Scientific Reports 10:14416.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [185]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943901 OA
    Zurowietz, M., and Nattkemper, T. W. (2020). An Interactive Visualization for Feature Localization in Deep Neural Networks. Frontiers in Artificial Intelligence - Machine Learning and Artificial Intelligence 3:49.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [184]
    2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2943127
    Miralles, A., Bruy, T., Wolcott, K., Scherz, M. D., Begerow, D., Beszteri, B., Bonkowski, M., Felden, J., Gemeinholzer, B., Glaw, F., et al. (2020). Repositories for Taxonomic Data: Where We Are and What is Missing. Systematic biology.
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  • [183]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945097 OA
    Zurowietz, M., and Nattkemper, T. W. (2020). Unsupervised Knowledge Transfer for Object Detection in Marine Environmental Monitoring and Exploration. IEEE Access 8.
    PUB | PDF | DOI | Download (ext.) | WoS
     
  • [182]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948381
    Langenkämper, D., Zurowietz, M., Schoening, T., and Nattkemper, T. W. (2020). Corrigendum: BIIGLE 2.0 - Browsing and Annotating Large Marine Image Collections. Frontiers in Marine Science 7:617268.
    PUB | DOI | Download (ext.) | WoS
     
  • [181]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944758 OA
    Langenkämper, D., van Kevelaer, R., Purser, A., and Nattkemper, T. W. (2020). Gear-Induced Concept Drift in Marine Images and Its Effect on Deep Learning Classification. Frontiers in Marine Science 7:506.
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  • [180]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936089 OA
    Wüllems, K., Kölling, J., Bednarz, H., Niehaus, K., Hans, V. H., and Nattkemper, T. W. (2019). Detection and visualization of communities in mass spectrometry imaging data. BMC Bioinformatics 20:303.
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  • [179]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936069 OA
    Langenkämper, D., Simon-Lledó, E., Hosking, B., Jones, D. O. B., and Nattkemper, T. W. (2019). On the impact of Citizen Science-derived data quality on deep learning based classification in marine images. PLOS ONE 14:e0218086.
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  • [178]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931637
    Nattkemper, T. W., and Hattab, G. (2019). SeeVis — 3D space-time cube rendering for visualization of microfluidics image data. Bioinformatics 35, 1802-1804.
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  • [177]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935488 OA
    Osterloff, J., Nilssen, I., Jarnegren, J., Van Engeland, T., Buhl-Mortensen, P., and Nattkemper, T. W. (2019). Computer vision enables short- and long-term analysis of Lophelia pertusa polyp behaviour and colour from an underwater observatory. Scientific reports 9:6578.
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  • [176]
    2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2935366
    Zurowietz, M., Langenkämper, D., and Nattkemper, T. W. (2019). “BIIGLE2Go - A scalable image annotation system for easy deployment on cruises” in Proceedings of IEEE OCEANS 2019.
    PUB | DOI | Download (ext.)
     
  • [175]
    2019 | Konferenzbeitrag | Im Druck | PUB-ID: 2937705
    Möller, T., Langenkämper, D., and Nattkemper, T. W. (In Press). “Wind turbine segmentation performing kNN-clustering on superpixel segmentations” in Image and Signal Processing for Remote Sensing XXV, Bruzzone, L., and Bovolo, F. eds. Image and Signal Processing for Remote Sensing XXV. Proceedings, vol. 11155,.
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  • [174]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918218 OA
    Hattab, G., Wiesmann, V., Becker, A., Munzner, T., and Nattkemper, T. W. (2018). A Novel methodology for characterizing cell subpopulations in automated time-lapse microscopy. Frontiers in Bioengineering and Biotechnology 6:17.
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  • [173]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932066 OA
    Zurowietz, M., Langenkämper, D., Hosking, B., Ruhl, H., and Nattkemper, T. W. (2018). MAIA - A machine learning assisted image annotation method for environmental monitoring and exploration . PLoS ONE 13:e0207498.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [172]
    2018 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2921040
    Möller, T., Nillsen, I., and Nattkemper, T. W. (2018). “Tracking Sponge Size and Behaviour with Fixed Underwater Observatories” in Pattern Recognition and Information Forensics. ICPR 2018 International Workshops, CVAUI, IWCF, and MIPPSNA, Beijing, China, August 20-24, 2018, Revised Selected Papers, Zhang, Z., Suter, D., Tian, Y., Branzan Albu, A., Sidère, N., and Jair Escalante, H. eds. Lecture Notes in Computer Science, vol. 11188, (Cham: Springer), 45-54.
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  • [171]
    2018 | Konferenzbeitrag | Angenommen | PUB-ID: 2921039 OA
    Langenkämper, D., van Kevelaer, R., and Nattkemper, T. W. (Accepted).“Strategies for Tackling the Class Imbalance Problem in Marine Image Classification”. Presented at the International Conference on Pattern Recognition 2018, Computer Vision for Automated Analysis of Underwater Imagery Workshop, Beijing.
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  • [170]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911830 OA
    Hattab, G., Schlüter, J. - P., Becker, A., and Nattkemper, T. W. (2017). ViCAR: An Adaptive and Landmark-Free Registration of Time Lapse Image Data from Microfluidics Experiments. Frontiers in Genetics 8:69.
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  • [169]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909190 OA
    Langenkämper, D., Zurowietz, M., Schoening, T., and Nattkemper, T. W. (2017). BIIGLE 2.0 - Browsing and Annotating Large Marine Image Collections. Frontiers in Marine Science 4:83.
    PUB | Dateien verfügbar | DOI | WoS
     
  • [168]
    2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2915349
    Möller, T., Nilssen, I., and Nattkemper, T. W. (2017). “Active learning for the classification of species in underwater images from a fixed observatory” in Proceedings of The IEEE International Conference on Computer Vision Workships (ICCVW) (Piscataway, NJ: IEEE), 2891-2897.
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  • [167]
    2017 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2908753 OA
    Osterloff, J., Möller, T., Nilssen, I., and Nattkemper, T. W. (2017).“Extracting Scalar Quantities from Underwater Images - a Toolbox for Image Data from Fixed Observatories.”. Presented at the Marine Imaging Workshop 2017, Kiel.
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  • [166]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901477
    Ahmed Raza, S. E., Langenkämper, D., Sirinukunwattana, K., Epstein, D., Nattkemper, T. W., and Rajpoot, N. M. (2016). Robust normalization protocols for multiplexed fluorescence bioimage analysis. BioData Mining 9:11.
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  • [165]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900943
    Langenkämper, D., Jakobi, T., Feld, D., Jelonek, L., Goesmann, A., and Nattkemper, T. W. (2016). Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations. Frontiers in Genetics 7:5.
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  • [164]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903712 OA
    Osterloff, J., Nilssen, I., Eide, I., de Oliveira Figueiredo, M. A., de Souza Tâmega, F. T., and Nattkemper, T. W. (2016). Computational Visual Stress Level Analysis of Calcareous Algae Exposed to Sedimentation. PLOS ONE 11:e0157329.
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  • [163]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907705
    Brink, B., Seidel, A., Kleinbölting, N., Nattkemper, T. W., and Albaum, S. (2016). Omics Fusion - A Platform for Integrative Analysis of Omics Data. Journal of Integrative Bioinformatics 13:296.
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  • [162]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901413 OA
    Gorzolka, K., Kölling, J., Nattkemper, T. W., and Niehaus, K. (2016). Spatio-Temporal Metabolite Profiling of the Barley Germination Process by MALDI MS Imaging. PLOS ONE 11:e0150208.
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  • [161]
    2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2904671
    Möller, T., Nilssen, I., and Nattkemper, T. W. (2016). “Change Detection in Marine Observatory Image Streams using Bi-Domain Feature Clustering” in 2016 23rd International Conference on Pattern Recognition (ICPR) (Piscataway, NJ: IEEE), 793-798.
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  • [160]
    2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2906524
    Möller, T., Nilssen, I., and Nattkemper, T. W. (2016). “Data-driven Long Term Change Analysis in Marine Observatory Image Streams” in 2016 ICPR 2nd Workshop on Computer Vision for Analysis of Underwater Imagery (CVAUI 2016) . Proceedings (Piscataway, NJ: IEEE), 13-18.
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  • [159]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2902750 OA
    Schoening, T., Osterloff, J., and Nattkemper, T. W. (2016). RecoMIA - Recommendations for marine image annotation: Lessons learned and future directions. Frontiers in Marine Science 3:59.
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  • [158]
    2016 | Konferenzbeitrag | Angenommen | PUB-ID: 2904670
    Langenkämper, D., and Nattkemper, T. W. (Accepted). “COATL - A Learning Architecture for Online Real-Time Detection and Classification Assistance for Environmental Data” in Proceedings of the International Conference on Pattern Recognition (ICPR).
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  • [157]
    2016 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2903653
    Durden, J., Schoening, T., Althaus, F., Friedmann, A., Garica, R., Glover, A. G., Greinert, J., Stout, N. J., Jones, D. O. B., Jordt, A., et al. (2016). “Perspectives in Visual Imaging for Marine Biology and Ecology: From Acquisition to Understanding” in Oceanography and Marine Biology: An Annual Review, Hughes, R. N., Hughes, D. J., Smith, I. P., and Dale, A. C. eds. 54 (Boca Raton: CRC Press), 1-72.
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  • [156]
    2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2903711
    Osterloff, J., Nilssen, I., and Nattkemper, T. W. (2016). “Computational Coral Feature Monitoring for the fixed underwater Observatory LoVe” in Proceedings of IEEE OCEANS 2016.
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  • [155]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903363
    Durden, J. M., Bett, B. J., Schoening, T., Morris, K. J., Ruhl, H. A., and Nattkemper, T. W. (2016). Comparison of image annotation data generated by multiple investigators for benthic ecology. Marine Ecology Progress Series 552, 61-70.
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  • [154]
    2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2906522
    Osterloff, J., Nilssen, I., Järnegren, J., Buhl-Mortensen, P., and Nattkemper, T. W. (2016). “Polyp activity estimation and monitoring for cold water corals with a deep learning approach” in Proceedigs of CVAUI 2016 (ICPR Workshop).
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  • [153]
    2016 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2902749
    Osterloff, J., Nilssen, I., and Nattkemper, T. W. (2016). A computer vision approach for monitoring the spatial and temporal shrimp distribution at the LoVe observatory. Methods in Oceanography 15-16, 114-128.
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  • [152]
    2016 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2902857
    Schoening, T., Kuhn, T., Jones, D. O. B., Simon-Lledo, E., and Nattkemper, T. W. (Accepted). Fully automated image segmentation for benthic resource assessment of poly-metallic nodules. Methods in Oceanography 15-16, 78-89.
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  • [151]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905905
    Nuno Gomes-Pereira, J., Auger, V., Beisiegel, K., Benjamin, R., Bergmann, M., Bowden, D., Buhl-Mortensen, P., De Leo, F. C., Dionísio, G., Durden, J. M., et al. (2016). Current and future trends in marine image annotation software. Progress in Oceanography 149, 106-129.
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  • [150]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722138 OA
    Kessler, N., Bonte, A., Albaum, S., Mäder, P., Messmer, M., Goesmann, A., Niehaus, K., Langenkämper, G., and Nattkemper, T. W. (2015). Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform. Frontiers in Bioinformatics and Computational Biology 3:35.
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  • [149]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2724431 OA
    Schoening, T., Kuhn, T., Bergmann, M., and Nattkemper, T. W. (2015). DELPHI - fast and adaptive computational laser point detection and visual footprint quantification for arbitrary underwater image collections. Frontiers in Marine Science 2:20.
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  • [148]
    2015 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2775951 OA
    Möller, T., Nilssen, I., Sumida, P., Osterloff, J., and Nattkemper, T. W. (2015).“Change Detection in underwater time laps videos from stationary observatories”. Presented at the GEOHAB, Salvador, Brazil.
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  • [147]
    2015 | Datenpublikation | PUB-ID: 2777409 OA
    Schlueter, J. - P., McIntosh, M., Hattab, G., Nattkemper, T. W., and Becker, A. (2015). Phase Contrast and Fluorescence Bacterial Time-Lapse Microscopy Image Data. Bielefeld University.
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  • [146]
    2015 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2775956 OA
    Steinbrink, B., Schoening, T., Brün, D., and Nattkemper, T. W. (2015).“Integrated Digital Marine Image Analysis and Management - new solutions to handle large image collections in environmental monitoring and exploration”. Presented at the GEOHAB, Salvador, Brazil.
    PUB | PDF
     
  • [145]
    2015 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2735538 OA
    Osterloff, J., Nilssen, I., Möller, T., and Nattkemper, T. W. (2015).“Computational analysis of spatial species distribution for integrated stationary environmental monitoring”. Presented at the Geohab 2015, Salvador, Bahia, Brazil.
    PUB | PDF
     
  • [144]
    2015 | Konferenzbeitrag | Im Druck | PUB-ID: 2775947
    Schoening, T., Langenkämper, D., Steinbrink, B., Brün, D., and Nattkemper, T. W. (In Press). “Rapid image processing and classification in underwater exploration using advanced high performance computing” in Proc. of the IEEE Oceans (Washington DC, USA: IEEE).
    PUB
     
  • [143]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2655889
    Osterloff, J., Schoening, T., Bergmann, M., and Nattkemper, T. W. (2014).“An overview and rating of benthic image pre-processings for color constancy”. Presented at the Marine Imaging Workshop, National Oceanography Centre, Southampton, UK.
    PUB
     
  • [142]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2705712 OA
    Langenkämper, D., Goesmann, A., and Nattkemper, T. W. (2014). AKE - The Accelerated k-mer Exploration Web-Tool for Rapid Taxonomic Classification and Visualization. BMC Bioinformatics 15:384.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [141]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2656048 OA
    Möller, T., Nilssen, I., and Nattkemper, T. W. (2014).“Introduction of image-based water transparency descriptors to quantify marine snow and turbidity features. A study with data from a stationary observatory”. Presented at the MIW 2014 - Marine Imaging Workshop, Southampton.
    PUB | PDF
     
  • [140]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706029 OA
    Kessler, N., Walter, F., Persicke, M., Albaum, S., Kalinowski, J., Goesmann, A., Niehaus, K., and Nattkemper, T. W. (2014). ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis. PLoS ONE 9:e113909.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [139]
    2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2683648
    Osterloff, J., Schoening, T., Bergmann, M., Durden, J. M., Ruhl, H. A., and Nattkemper, T. W. (2014).“Ranking Color Correction Algorithms using Cluster Indices”. Presented at the ICPR Workshop on Computer Vision for Analysis of Underwater Imagery, Stockhom.
    PUB | DOI | Download (ext.)
     
  • [138]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2690300
    Kölling, J., Zurowietz, M., and Nattkemper, T. W. (2014).“Interactive Exploration of Spatial Distribution in Mass Spectrometry Imaging”. Presented at the 4th Symposium on Biological Data Visualization (BioVis), Boston, MA, USA.
    PUB | Download (ext.)
     
  • [137]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2676320 OA
    Osterloff, J., Nilssen, I., de Oliveira Figueiredo, M. A., de Souza Tâmega, F. T., Möller, T., and Nattkemper, T. W. (2014).“Automated Image based Biomass Quantification in Mesocosm Studies”. Presented at the Geohab 2014, Lorne, Victoria, Australia.
    PUB | PDF
     
  • [136]
    2014 | Konferenzbeitrag | Im Druck | PUB-ID: 2690335
    Rathke, M., Kölling, J., Gorzolka, K., Niehaus, K., and Nattkemper, T. W. (In Press).“Interactive and dynamic web-based visual exploration of high dimensional bioimages with real time clustering”. Presented at the German Conference on Bioinformatics (GCB), Bielefeld, Germany.
    PUB
     
  • [135]
    2014 | Kurzbeitrag Konferenz / Poster | Im Druck | PUB-ID: 2690436 OA
    Kölling, J., Gorzolka, K., Niehaus, K., and Nattkemper, T. W. (In Press).“Spatio-temporal analysis of metabolite profiles during barley germination”. Presented at the German Conference on Bioinformatics (GCB), Bielefeld, Germany.
    PUB | PDF
     
  • [134]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2690322
    Kölling, J., Zurowietz, M., and Nattkemper, T. W. (2014).“Interactive Exploration of Spatial Distribution in Mass Spectrometry Imaging”. Presented at the 22nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, MA, USA.
    PUB | Download (ext.)
     
  • [133]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2676334
    Möller, T., Nilssen, I., Sumida, P. Y. G., Elbers, K. L., and Nattkemper, T. W. (2014).“Novelty detection in time lapse image data”. Presented at the Geohab 2014, Lorne, Victoria, Australia.
    PUB
     
  • [132]
    2014 | Konferenzband | Veröffentlicht | PUB-ID: 2901695
    Giegerich, R., Hofestädt, R., and Nattkemper, T. W. eds. (2014). German Conference on Bioinformatics 2014. GI-Edition: lecture notes in informatics 235.
    PUB
     
  • [131]
    2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2717407
    Schoening, T., Kuhn, T., and Nattkemper, T. W. (2014). “Seabed Classification Using a Bag-of-Prototypes Feature Representation” in Computer Vision for Analysis of Underwater Imagery (CVAUI), 2014 ICPR Workshop on 17-24.
    PUB | DOI
     
  • [130]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2775961
    Schoening, T., Brün, D., Kuhn, T., and Nattkemper, T. W. (2014).“Image-based marine resource exploration and biodiversity assessment with MAMAS (Marine data Asset Management and Analysis System)”. Presented at the UMI (Underwater Mining Institute), Lisbon, Portugal.
    PUB
     
  • [129]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610505
    Purser, A., Ontrup, J., Schoening, T., Thomsen, L., Tong, R., Unnithan, V., and Nattkemper, T. W. (2013). Microhabitat and shrimp abundance within a Norwegian cold-water coral ecosystem. Biogeosciences 10, 5779-5791.
    PUB | DOI | WoS
     
  • [128]
    2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2610134
    Schoening, T., Steinbrink, B., Brün, D., Kuhn, T., and Nattkemper, T. W. (In Press). “Ultra-fast segmentation and quantification of poly-metallic nodule coverage in high-resolution digital images” in Proceedings of the UMI 2013.
    PUB
     
  • [127]
    2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2537912
    Rubiano Castellanos, C. C., Merkle, T., and Nattkemper, T. W. (In Press).“Using random forest to find Nuclear Export Signals (NESs) in proteins of Arabidopsis thaliana”. Presented at the BIOINFORMATICS Conf., Barcelona, Spain.
    PUB
     
  • [126]
    2013 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2656054
    Schoening, T., Bergmann, M., and Nattkemper, T. W. (2013).“A machine-learning system for the automated detection of megafauna and its applicability unseen footage”. Presented at the GEOHAB, Rome.
    PUB
     
  • [125]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2625914
    Bergmann, T., Maeder, U., Fiebich, M., Dickob, M., Nattkemper, T. W., and Anselmetti, D. (2013). Categorization of two-photon microscopy images of human cartilage into states of osteoarthritis. Osteoarthritis And Cartilage 21, 1074-1082.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [124]
    2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2610762
    Nattkemper, T. W. (2013). “Cluster Analysis” in Encyclopedia of Systems Biology, Dubitzky, W., Wolkenhauer, O., Cho, K. - H., and Yokota, H. eds. (New York, NY : Springer).
    PUB
     
  • [123]
    2013 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2656093
    Kuhn, T., Rühlemann, C., Wiedicke-Hombach, M., Schoening, T., and Nattkemper, T. W. (2013).“Application of Hydro-Acoustic and Video Data for the Exploration of Manganese Nodule Fields”. Presented at the ISOPE OMS, Szczecin, Poland.
    PUB
     
  • [122]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610129
    Kessler, N., Bonte, A., Langenkämper, G., Niehaus, K., Goesmann, A., and Nattkemper, T. W. (2013). MeltDB 2.0 - Advances of the metabolomics software system. Bioinformatics 29, 2452-2459.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [121]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2542584
    Held, C., Nattkemper, T. W., Palmisano, R., and Wittenberg, T. (2013). Approaches to automatic parameter fitting in a microscopy image segmentation pipeline: An exploratory parameter space analysis. Journal of Pathology Informatics 4:5.
    PUB | DOI | PubMed | Europe PMC
     
  • [120]
    2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2538625
    Bonte, A., Kessler, N., Nattkemper, T. W., Goesmann, A., Cecile, T., Mäder, P., Niehaus, K., and Langenkämper, G. (In Press).“Einsatz von Protein- und Metabolit-Profiling-Methoden zur Unterscheidung von ökologischem und konventionellem Weizen”. Presented at the 12. Wissenschaftstagung Ökologischer Landbau „Ideal und Wirklichkeit – Perspektiven Ökologischer Landbewirtschaftung“, Bonn, Germany.
    PUB
     
  • [119]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2494458 OA
    Schoening, T., Bergmann, M., Purser, A., Dannheim, J., Gutt, J., and Nattkemper, T. W. (2012). Semi-automated image analysis for the assessment of megafaunal densities at the Arctic deep-sea observatory HAUSGARTEN. PLoS ONE 7:e38179.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [118]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2455753 OA
    Raza, S. - E. - A., Epstein, D., Nattkemper, T. W., and Rajpoot, N. (2012). RAMTaB: Robust Alignment of Multi-Tag Bioimages. PLoS ONE 7:e30894.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [117]
    2012 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2656105
    Figueiredo Creed, M., Coutinho, R., Reynier, M. V., Cesar Paiva, P., Villas, A. B., Bôas, A. B., Tapajó s de Souza Tâmega, F., Nattkemper, T. W., and Eide, I. (2012).“Effects of drill cuttings on a deep water rhodolith bed: an integrated approach”. Presented at the V International Rhodolith Workshop, Granada, Spain.
    PUB
     
  • [116]
    2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2656050
    Schoening, T., Kuhn, T., and Nattkemper, T. W. (2012). “Estimation of poly-metallic nodule coverage in benthic images” in Proc. of the 41st Conference of the Underwater Mining Institute (UMI).
    PUB
     
  • [115]
    2012 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2656067
    Schoening, T., Bergmann, M., Purser, A., Gutt, J., Dannheim, J., Taylor, J., Nattkemper, T. W., and Boetius, A. (2012).“The impact of experts’ inter- and intra-observer agreements on computational object classification in images from the deep seafloor of the HAUSGARTEN observatory.”. Presented at the 13th International Deep-Sea Biology Symposium, Wellington, New Zealand.
    PUB
     
  • [114]
    2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2515687 OA
    Kölling, J., Rathke, M., Abouna, S., Khan, M., and Nattkemper, T. W. (2012).“Analyzing Multi-Tag Bioimages with BIOIMAX colocation mining tools”. Presented at the IEEE International Symposium on BIOMEDICAL IMAGING (ISBI), Barcelona.
    PUB | PDF
     
  • [113]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232
    Trötschel, C., Albaum, S., Wolff, D., Schröder, S., Goesmann, A., Nattkemper, T. W., and Poetsch, A. (2012). Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation. Molecular & Cellular Proteomics 11, 512-526.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [112]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2536156
    Zhou, L., Pelengaris, S., Abouna, S., Young, J., Epstein, D., Herold, J., Nattkemper, T. W., Nakhai, H., and Khan, M. (2012). Re-Expression of IGF-II Is Important for Beta Cell Regeneration in Adult Mice. PLoS ONE 7:e43623.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [111]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2481783 OA
    Kölling, J., Langenkämper, D., Sylvie, A., Michale, K., and Nattkemper, T. W. (2012). WHIDE - A web tool for visual data mining colocation patterns in multivariate bioimages. Bioinformatics 28, 1143-1150.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [110]
    2012 | Konferenzbeitrag | Im Druck | PUB-ID: 2515596 OA
    Nattkemper, T. W. (In Press).“Are we ready for Science 2.0?”. Presented at the 4th International Conference on Knowledge Management and Information Sharing (KMIS), Barcelona.
    PUB | PDF
     
  • [109]
    2012 | Konferenzbeitrag | PUB-ID: 2515700
    Schoening, T., Bergmann, M., Boetius, A., and Nattkemper, T. W. (2012).“Investigation of hidden parameters influencing the automated object detection in benthic images”. Presented at the IEEE OCEANS 2012 MTS/IEEE, Hampton Roads, Virginia, USA.
    PUB
     
  • [108]
    2012 | Konferenzbeitrag | PUB-ID: 2515671
    Held, C., Nattkemper, T. W., and Wittenberg, T. (2012).“Approaches to automatic parameter fitting in a microscopy image segmentation pipeline: An exploratory parameter space analysis”. Presented at the Histopathology Image Analysis (HIMA) workshop at MICCAI 2012, Nizza.
    PUB
     
  • [107]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300114
    Loyek, C., Bunkowski, A., Vautz, W., and Nattkemper, T. W. (2011). Web2.0 paves new ways for collaborative and exploratory analysis of Chemical Compounds in Spectrometry Data. Journal of Integrative Bioinformatics 8, 158.
    PUB | DOI | PubMed | Europe PMC
     
  • [106]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063 OA
    Albaum, S., Hahne, H., Otto, A., Haußmann, U., Becher, D., Poetsch, A., Goesmann, A., and Nattkemper, T. W. (2011). A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study. Proteome Science 9:30.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [105]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300073 OA
    Martin, C., Tauchen, A., Becker, A., and Nattkemper, T. W. (2011). A Normalized Tree Index for identification of correlated clinical parameters in microarray data. BioData Mining 4:2.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [104]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300082 OA
    Loyek, C., Khan, M., Rajpoot, N., and Nattkemper, T. W. (2011). BIOIMAX - A Web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data. BMC Bioinformatics 12:297.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [103]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300092
    Bergmann, M., Langwald, N., Ontrup, J., Soltwedel, T., Schewe, I., Klages, M., and Nattkemper, T. W. (2011). Megafaunal assemblages from two shelf stations west of Svalbard. Marine Biology Research 7, 525-539.
    PUB | DOI | WoS
     
  • [102]
    2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300232 OA
    Loyek, C., Kölling, J., Langenkämper, D., Niehaus, K., and Nattkemper, T. W. (2011). “A Web2.0 Strategy for the Collaborative Analysis of Complex Bioimages” in Advances in Intelligent Data Analysis X: 10th International Symposium, IDA 2011, Porto, Portugal, October 29-31, 2011. Proceedings, Gama, J., Bradley, E., and Hollmén, J. eds. Lecture Notes in Computer Science, vol. 7014, (Berlin, Heidelberg: Springer), 258-269.
    PUB | PDF | DOI
     
  • [101]
    2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300237 OA
    Langenkämper, D., Kölling, J., Khan, M., Rajpoot, N., and Nattkemper, T. W. (2011).“Towards Protein Network Analysis using TIS Imaging and Exploratory Data Analysis”. Presented at the Workshop on Computational Systems Biology (WCSB), Zürich, Switzerland.
    PUB | PDF
     
  • [100]
    2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2656082
    Purser, A., Ontrup, J., Schoening, T., Thomsen, L., Unnithan, V., and Nattkemper, T. W. (2011).“How to squeeze even more from your Terabytes of video data!”.
    PUB
     
  • [99]
    2011 | Konferenzbeitrag | Im Druck | PUB-ID: 2315356
    Bergmann, T., Fiebich, T. M., Nattkemper, T. W., and Anselmetti, D. (In Press).“Categorization of 2-photon microscopy images of human articular cartilage into states of arthritis”. Presented at the Tagung der Biomedizinischen Technik (BMT), Freiburg, Germany.
    PUB
     
  • [98]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2373808
    Herold, J., Loyek, C., and Nattkemper, T. W. (2011). Multivariate Image Mining. Wiley Interdisciplinary Reviews: DATA MINING AND KNOWLEDGE DISCOVERY 1, 2-13.
    PUB | DOI | WoS
     
  • [97]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300102
    Arif, M., Rajpoot, N., Technow, U., Chakraborty, T., Fisch, N., Jensen, N. A., Niehaus, K., and Nattkemper, T. W. (2011). Quantification of Cell Infection Caused by Listeria monocytogenes Invasion. Journal of Biotechnology 154, 76-83.
    PUB | DOI | PubMed | Europe PMC
     
  • [96]
    2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2323705 OA
    Langenkämper, D., Kölling, J., Abouna, S., Khan, M., Niehaus, K., and Nattkemper, T. W. (2011).“TICAL - a web-tool for multivariate image clustering and data topology preserving visualization”. Presented at the Microscopic Image Analysis with Applications in Biology (MIAAB), Heidelberg, Germany.
    PUB | PDF | Download (ext.)
     
  • [95]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093532
    Scherbart, A., and Nattkemper, T. W. (2011). Looking inside self-organizing map ensembles with resampling and negative correlation learning. Neural Networks 24, 130-141.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [94]
    2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300235
    Schoening, T., Hans, V., and Nattkemper, T. W. (2011). “Towards improved epilepsia diagnosis by unsupervised segmentation of neuropathology tissue sections using Ripley’s-L features” in Bildverarbeitung für die Medizin 2011:Algorithmen - Systeme - Anwendungen Proceedings des Workshops vom 20. - 22. März 2011 in Lübeck Informatik aktuell (Berlin, Heidelberg: Springer), 44-48.
    PUB | DOI
     
  • [93]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929340
    Burgemeister, S., Nattkemper, T. W., Noll, T., Hoffrogge, R., and Flaschel, E. (2010). CellViCAM-Cell viability classification for animal cell cultures using dark field micrographs. JOURNAL OF BIOTECHNOLOGY 149, 310-316.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [92]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794419
    Herold, J., Zhou, L., Abouna, S., Pelengaris, S., Epstein, D., Khan, M., and Nattkemper, T. W. (2010). Integrating semantic annotation and information visualization for the analysis of multichannel fluorescence micrographs from pancreatic tissue. Computerized Medical Imaging and Graphics 34, 446-452.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [91]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929311
    Gölzhäuser, A., Nattkemper, T. W., Niehaus, K., Pühler, A., and Sauer, M. (2010). BioImaging: Contributions from biology, physics and informatics. Journal of Biotechnology 149, 227-228.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [90]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929335
    Herold, J., Schubert, W., and Nattkemper, T. W. (2010). Automated detection and quantification of fluorescently labeled synapses in murine brain tissue sections for high throughput applications. JOURNAL OF BIOTECHNOLOGY 149, 299-309.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [89]
    2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018390
    Herold, J., Abouna, S., Zhou, L., Pelengaris, S., Epstein, D. B. A., Khan, M., and Nattkemper, T. W. (2009). “A way towards analyzing high-content bioimage data by means of semantic annotation and visual data mining” in SPIE Medical Imaging (SPIE).
    PUB | DOI
     
  • [88]
    2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018422
    Ontrup, J., Ehnert, N., Bergmann, M., and Nattkemper, T. W. (2009). “BIIGLE - Web 2.0 enabled labelling and exploring of images from the Arctic deep-sea observatory HAUSGARTEN” in OCEANS 2009 - Europe (Bremen).
    PUB | DOI
     
  • [87]
    2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018427
    Qureshi, H., Rajpoot, N., Nattkemper, T. W., and Hans, V. (2009). “A Robust Adaptive Wavelet-based Method for Classification of Meningioma Histology Images” in MICCAI«2009 Workshop on Optical Tissue Image Analysis in Microscopy, Histology, and Endoscopy.
    PUB
     
  • [86]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314 OA
    Diaz, N. N., Krause, L., Goesmann, A., Niehaus, K., and Nattkemper, T. W. (2009). TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach. BMC Bioinformatics 10, 56.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [85]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
    Albaum, S., Neuweger, H., Fraenzel, B., Lange, S., Mertens, D., Troetschel, C., Wolters, D., Kalinowski, J., Nattkemper, T. W., and Goesmann, A. (2009). Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics 25, 3128-3134.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [84]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588783
    Purser, A., Bergmann, M., Ontrup, J., and Nattkemper, T. W. (2009). Use of machine-learning algorithms for the automated detection of cold-water coral habitats: a pilot study. Marine Ecology Progress Series 397, 241-251.
    PUB | DOI | WoS
     
  • [83]
    2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1591448
    Saalbach, A., Lange, O., Nattkemper, T. W., and Meyer-Baese, A. (2009). “On the application of (topographic) independent and tree-dependent component analysis for the examination of DCE-MRI data” in Biomedical Signal Processing and Control BIOMEDICAL SIGNAL PROCESSING AND CONTROL, vol. 4, (ELSEVIER SCI LTD), 247-253.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [82]
    2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018440
    Schoening, T., Ehnert, N., Ontrup, J., and Nattkemper, T. W. (2009). “BIIGLE Tools - A Web 2.0 Approach for Visual Bioimage Database Mining” in IV 09 - Intl. Conference on Information Visualization (IEEE).
    PUB | DOI
     
  • [81]
    2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018405
    Loyek, C., Woermann, F. G., and Nattkemper, T. W. (2008). “Detection of Focal Cortical Dysplasia in MRI Using Textural Features” in Proceedings of BVM 2008, Tolxdorff, T. ed. Informatik aktuell (Berlin, Heidelberg: Springer Verlag), 432-436.
    PUB | DOI
     
  • [80]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636280 OA
    Timm, W., Scherbart, A., Boecker, S., Kohlbacher, O., and Nattkemper, T. W. (2008). Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics. BMC Bioinformatics 9, 443.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [79]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585611 OA
    Wei, N., Flaschel, E., Friehs, K., and Nattkemper, T. W. (2008). A machine vision system for automated non-invasive assessment of cell viability via dark field microscopy, wavelet feature selection and classification. BMC Bioinformatics 9, 449.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [78]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587052
    Martin, C., Diaz, N. N., Ontrup, J., and Nattkemper, T. W. (2008). Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification. Bioinformatics 24, 1568-1574.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [77]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588286
    Twellmann, T., Meyer-Baese, A., Lange, O., Foo, S., and Nattkemper, T. W. (2008). Model-free visualization of suspicious lesions in breast MRI based on supervised and unsupervised learning. ENGINEERING APPLICATIONS OF ARTIFICIAL INTELLIGENCE 21, 129-140.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [76]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364 OA
    Krause, L., Diaz, N. N., Goesmann, A., Kelley, S., Nattkemper, T. W., Rohwer, F., Edwards, R. A., and Stoye, J. (2008). Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Research 36, 2230-2239.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [75]
    2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018409
    Martin, C., and Nattkemper, T. W. (2008). “A Tree Index to Support Clustering Based Exploratory Data Analysis” in Bioinformatics Research and Development : Second International Conference, BIRD 2008 Vienna, Austria, July 7-9, 2008 Proceedings Communications in Computer and Information Science, vol. 13, (Berlin, Heidelberg: Springer), 1-15.
    PUB | DOI
     
  • [74]
    2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018435
    Scherbart, A., Timm, W., Böcker, S., and Nattkemper, T. W. (2008). “Improved Mass Spectrometry Peak Intensity Prediction by Adaptive Feature Weighting” in International Conference on Neural Information Processing (Auckland, New Zealand).
    PUB | DOI
     
  • [73]
    2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
    Albaum, S., Neuweger, H., Lange, S., Mertens, D., Runte, K., Kalinowski, J., Nattkemper, T. W., and Goesmann, A. (2008). “ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)” in HUPO 7th Annual World Congress.
    PUB
     
  • [72]
    2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018398
    Herold, J., Friedenberger, M., Bode, M., Rajpoot, N., Schubert, W., and Nattkemper, T. W. (2008). “Flexible Synapse Detection in Fluorescence Micrographs by Modeling Human Expert Grading” in Proc. of 2008 IEEE International Symposium on Biomedical Imaging.
    PUB | DOI
     
  • [71]
    2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018432
    Scherbart, A., and Nattkemper, T. W. (2008). “The Diversity of Regression Ensembles Combining Bagging and Random Subspace Method” in International Conference on Neural Information Processing.
    PUB | DOI
     
  • [70]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1630738
    Pobigaylo, N., Szymczak, S., Nattkemper, T. W., and Becker, A. (2008). Identification of genes relevant to symbiosis and competitiveness in Sinorhizobium meliloti using signature-tagged mutants. MOLECULAR PLANT-MICROBE INTERACTIONS 21, 219-231.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [69]
    2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018412 OA
    Martin, C., Díaz Solórzano, N. N., Ontrup, J., and Nattkemper, T. W. (2007). “Genome feature exploration using hyperbolic Self-Organizing Maps” in Proceedings of the 6th International Workshop on Self-Organizing Maps (WSOM 2007) (Bielefeld: Bielefeld University).
    PUB | PDF | DOI
     
  • [68]
    2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714045 OA
    Scherbart, A., Timm, W., Böcker, S., and Nattkemper, T. W. (2007). “SOM-based Peptide Prototyping for Mass Spectrometry Peak Intensity Prediction” in Proceedings of the 6th Workshop on Self-Organizing Maps (WSOM 07) (Bielefeld: Bielefeld University).
    PUB | PDF | DOI
     
  • [67]
    2007 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2714002
    Lessmann, B., Wang, Y., Bergmann, M., Kämpfe, T., and Nattkemper, T. W. (2007).“Use of automated image analysis to detect changes in megafaunal densities at HAUSGARTEN (79°N west off Svalbard) between 2002 and 2004”. Presented at the EMBS - 42nd European Marine Biology Symposium, Kiel, Germany.
    PUB
     
  • [66]
    2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2714021
    Nattkemper, T. W., Degenhard, A., and Twellmann, T. (2007). “Breast Tumor Classification and Visualization with Machine-Learning Approaches” in Cancer Imaging - Lung and breast carcinomas, Hayat, M. A. ed., vol. 1, (Amsterdam : Academic Press), 309-321.
    PUB
     
  • [65]
    2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2714040
    Scherbart, A., Timm, W., Boecker, S., and Nattkemper, T. W. (2007). “Neural Network Approach for Mass Spectrometry Prediction by Peptide Prototyping” in Artificial Neural Networks – ICANN 2007 - 17th International Conference, Porto, Portugal, September 9-13, 2007, Proceedings, Part II, Sá de, J. M. ed. Lecture Notes in Computer Science, vol. 4669, (Berlin: Springer), 90-99.
    PUB | DOI
     
  • [64]
    2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2714032
    Lessmann, B., Nattkemper, T. W., Kessar, P., Pointon, L., Khazen, M., Leach, M. O., and Degenhard, A. (2007). Multiscale Analysis of MR Mammography Data. Zeitschrift für Medizinische Physik (german journal of medical physics) 17, 166-171.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [63]
    2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595739
    Wei, N., You, J., Friehs, K., Flaschel, E., and Nattkemper, T. W. (2007). In situ dark field microscopy for on-line monitoring of yeast cultures. BIOTECHNOLOGY LETTERS 29, 373-378.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [62]
    2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593120
    Wei, N., You, J., Friehs, K., Flaschel, E., and Nattkemper, T. W. (2007). An in situ probe for on-line monitoring of cell density and viability on the basis of dark field microscopy in conjunction with image processing and supervised machine learning. Biotechnology and Bioengineering 97, 1489-1500.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [61]
    2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1630749
    Lessmann, B., Nattkemper, T. W., Hans, V. H., and Degenhard, A. (2007). A method for linking computed image features to histological semantics in neuropathology. Journal of Biomedical Informatics 40, 631-641.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [60]
    2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783345 OA
    Krause, L., McHardy, A. C., Nattkemper, T. W., Pühler, A., Stoye, J., and Meyer, F. (2007). GISMO - gene identification using a support vector machine for ORF classification. Nucleic Acids Research 35, 540-549.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [59]
    2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2018416
    Nattkemper, T. W., Degenhard, A., and Twellmann, T. (2007). “Breas” in Cancer Imaging - Lung and breast carcinomas, Hayat, M. A. ed., vol. 1, (Academic Press), 309-324.
    PUB
     
  • [58]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2714075
    Deters grosse, H., Timm, W., and Nattkemper, T. W. (2006). REEFSOM - A Metaphoric Data Display for Exploratory Data Mining : journal of new media in neural and cognitive science and education. Brains, Minds and Media 2.
    PUB | Download (ext.)
     
  • [57]
    2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374232
    Varini, C., Lessmann, B., Degenhard, A., Hans, V. H., and Nattkemper, T. W. (2006). “Visual Exploration of Pathology Images by a Discrete Wavelet Transform Preprocessed Locally Linear Embedding.” in Bildverarbeitung für die Medizin, Handels, H., Ehrhardt, J., Horsch, A., Meinzer, H. - P., Tolxdorff, T., and Gesellschaft für Informatik eds. Informatik aktuell (Berlin : Springer), 66-70.
    PUB | Download (ext.)
     
  • [56]
    2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714148
    Twellmann, T., Lange, O., Nattkemper, T. W., and Meyer, A. (2006). “Visualizations of Suspicious Lesions in Breast MRI Based on Intelligent Neural Systems” in Intelligent Computing: Theory and Applications IV Proceedings of SPIE, vol. 6229, (San Diego, CA: SPIE).
    PUB | DOI
     
  • [55]
    2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374254
    Lessmann, B., Nattkemper, T. W., Huth, J., Loyek, C., Kessar, P., Khazen, M., Pointon, L., Leach, M. O., and Degenhard, A. (2006). “Content Based Image Retrieval for Dynamic Time Series Data” in Proceedings of BVM 61-65.
    PUB
     
  • [54]
    2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374494
    Timm, W., Böcker, S., Twellmann, T., and Nattkemper, T. W. (2006). “Peak intensity prediction for pmf mass spectra using support vector regression” in Proc. of the 7th International FLINS Conference on Applied Artificial Intelligence (WORLD SCIENTIFIC), 565-572.
    PUB | DOI
     
  • [53]
    2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714060
    Lessmann, B., Hans, V., Degenhard, A., and Nattkemper, T. W. (2006). “Feature space exploration of pathology images using Content-Based Database Visualization” in Medical Imaging 2006: Image Processing Proceedings of SPIE, vol. 6144, (San Diego, CA: SPIE).
    PUB | DOI
     
  • [52]
    2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714065
    Varini, C., Degenhard, A., and Nattkemper, T. W. (2006). “Histologic Characterization of DCE-MRI Tumors with Dimensional Data Reduction” in Medical Imaging 2006: Image Processing Proceedings of SPIE, vol. 6144, (San Diego, CA: SPIE).
    PUB | DOI
     
  • [51]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600329
    Miksch, G., Bettenworth, F., Friehs, K., Flaschel, E., Saalbach, A., and Nattkemper, T. W. (2006). A rapid reporter system using GFP as a reporter protein for identification and screening of synthetic stationary-phase promoters in Escherichia coli. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 70, 229-236.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [50]
    2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1597259
    Martin, C., Deters, H. grosse, and Nattkemper, T. W. (2006). “Fusing biomedical multi-modal data for exploratory data analysis” in ARTIFICIAL NEURAL NETWORKS - ICANN 2006, PT 2, Kollias, S. ed., vol. 4132, (Berlin, Heidelberg: SPRINGER-VERLAG BERLIN), 798-807.
    PUB | DOI | WoS
     
  • [49]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598838
    Pobigaylo, N., Wetter, D., Szymczak, S., Schiller, U., Kurtz, S., Meyer, F., Nattkemper, T. W., and Becker, A. (2006). Construction of a large signature-tagged mini-Tn5 transposon library and its application to mutagenesis of Sinorhizobium meliloti. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 72, 4329-4337.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [48]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596731
    Varini, C., Degenhard, A., and Nattkemper, T. W. (2006). Visual exploratory analysis of DCE-MRI data in breast cancer by dimensional data reduction: A comparative study. BIOMEDICAL SIGNAL PROCESSING AND CONTROL 1, 56-63.
    PUB | DOI | WoS
     
  • [47]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598535
    Varini, C., Degenhard, A., and Nattkemper, T. W. (2006). ISOLLE: LLE with geodesic distance. NEUROCOMPUTING 69, 1768-1771.
    PUB | DOI | WoS
     
  • [46]
    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603560
    Nattkemper, T. W., Arnrich, B., Lichte, O., Timm, W., Degenhard, A., Pointon, L., Hayes, C., and Leach, M. O. (2005). Evaluation of radiological features for breast tumour classification in clinical screening with machine learning methods. ARTIFICIAL INTELLIGENCE IN MEDICINE 34, 129-139.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [45]
    2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714153
    Lessmann, B., Nattkemper, T. W., Degenhard, A., Pointon, L., Kessar, P., Khazen, M., and Leach, M. O. (2005). “Clustering approach for wavelet transformed MR image data” in Proceedings of the 14th International Conference of Medical Physics 1412.
    PUB
     
  • [44]
    2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714331
    Saalbach, A., Twellmann, T., and Nattkemper, T. W. (2005). “Spectral Clustering for Data Categorization based on Self-Organizing Maps” in Applications of Neural Networks and Machine Learning in Image Processing IX, Nasser M., N. ed., vol. 5673, (San Jose, CA), 12-18.
    PUB
     
  • [43]
    2005 | Monographie | PUB-ID: 2714309
    Bettenworth, F., Miksch, G., Fries, K., Flaschel, E., Saalbach, A., Eickmeyer, J., and Nattkemper, T. W. (2005). An Online Monitoring System for the Screening of Stationary-Phase Promoters in E. Coli using GFP as a Reporter Protein.
    PUB
     
  • [42]
    2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374666
    Twellmann, T., Lichte, O., Saalbach, A., Wismüller, A., and Nattkemper, T. W. (2005).“An Adaptive Colour Scale for Comparison of Pseudo Colouring Techniques for DCE-MRI Data”. Presented at the Workshop für Bildverarbeiteung für die Medzin.
    PUB
     
  • [41]
    2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374546
    Saalbach, A., Twellmann, T., Nattkemper, T. W., Wismüller, A., Ontrup, J., and Ritter, H. (2005). “A hyperbolic topographic mapping for proximity data” in Proc. of the IASTED International Conference of Artificial Intelligence and Applications, vol. 2005, 106-111.
    PUB
     
  • [40]
    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2714263
    Twellmann, T., Lichte, O., and Nattkemper, T. W. (2005). An Adaptive Tissue Characterisation Network for Model-Free Visualisation of Dynamic Contrast-Enhanced Magnetic Resonance Image Data. IEEE Transactions on Medical Imaging 24, 1256-1266.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [39]
    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2714340
    Nattkemper, T. W., and Wismüller, A. (2005). Tumour feature analysis with unsupervised machine learning. Medical Image Analysis 9, 344-351.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [38]
    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2374187
    Saalbach, A., Ontrup, J., Ritter, H., and Nattkemper, T. W. (2005). Image fusion based on topographic mappings using the hyperbolic space. Information Visualization 4, 266-275.
    PUB | DOI
     
  • [37]
    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603030
    Nattkemper, T. W., and Wismuller, A. (2005). Tumor feature visualization with unsupervised learning. MEDICAL IMAGE ANALYSIS 9, 344-351.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [36]
    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946602
    Wei, N., Flaschel, E., Saalbach, A., Twellmann, T., and Nattkemper, T. W. (2005). Reagent-free automatic cell viability determination using neural networks based machine vision and dark-field microscopy in Saccharomyces cerevisiae. Conf Proc IEEE Eng Med Biol Soc 6, 6305-6308.
    PUB | DOI | PubMed | Europe PMC
     
  • [35]
    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602344
    Prank, K., Schulze, E., Eckert, O., Nattkemper, T. W., Bettendorf, M., Maser-Gluth, C., Sejnowski, T. J., Grote, A., Penner, E., von zur Muhlen, A., et al. (2005). Machine learning approaches for phenotype-genotype mapping: predicting heterozygous mutations in the CYP21B gene from steroid profiles. EUROPEAN JOURNAL OF ENDOCRINOLOGY 153, 301-305.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [34]
    2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601519
    Varini, C., Degenhard, A., and Nattkemper, T. W. (2005). “ISOLLE: Locally linear embedding with geodesic distance” in KNOWLEDGE DISCOVERY IN DATABASES: PKDD 2005, Jorge, A. ed. Lecture notes in computer science ; 3721 : Lecture notes in artificial intelligence, vol. 3721, (Berlin, Heidelberg: SPRINGER-VERLAG BERLIN), 331-342.
    PUB | DOI | WoS
     
  • [33]
    2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601848
    Miksch, G., Bettenworth, F., Friehs, K., Flaschel, E., Saalbach, A., Twellmann, T., and Nattkemper, T. W. (2005). “Libraries of synthetic stationary-phase and stress promoters as a tool for fine-tuning of expression of recombinant proteins in Escherichia coli” in Journal of Biotechnology JOURNAL OF BIOTECHNOLOGY, vol. 120, (ELSEVIER SCIENCE BV), 25-37.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [32]
    2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601906
    Lessmann, B., Degenhard, A., Kessar, P., Pointon, L., Khazen, M., Leach, M. O., and Nattkemper, T. W. (2005). “SOM-based wavelet filtering for the exploration of medical images” in ARTIFICIAL NEURAL NETWORKS: BIOLOGICAL INSPIRATIONS - ICANN 2005, PT 1, PROCEEDINGS, Duch, W. ed. Lecture notes in computer science, vol. 3696, (Berlin, Heidelberg: SPRINGER-VERLAG BERLIN), 671-676.
    PUB | DOI | WoS
     
  • [31]
    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602177
    Twellmann, T., Lichte, O., and Nattkemper, T. W. (2005). An adaptive tissue characterization network for model-free visualization of dynamic contrast-enhanced magnetic resonance image data. IEEE TRANSACTIONS ON MEDICAL IMAGING 24, 1256-1266.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [30]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1666510 OA
    Twellmann, T., Saalbach, A., Gerstung, O., Leach, M. O., and Nattkemper, T. W. (2004). Image fusion for dynamic contrast enhanced magnetic resonance imaging. Biomed Eng Online 3:35.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [29]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946892
    Nattkemper, T. W. (2004). Automatic segmentation of digital micrographs: a survey. Stud Health Technol Inform 107, 847-851.
    PUB | PubMed | Europe PMC
     
  • [28]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946838
    Twellmann, T., Saalbach, A., Müller, C., Nattkemper, T. W., and Wismuller, A. (2004). Detection of suspicious lesions in dynamic contrast enhanced MRI data. The 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society 1, 454-457.
    PUB | PubMed | Europe PMC
     
  • [27]
    2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714397
    Kämpfe, T., Nattkemper, T. W., and Ritter, H. (2004). “AQUISAR: Image Retrieval in Underwater Webcam Images” in WIAMIS 2004 : 5th International Workshop on Image Analysis for Multimedia Interactive Services (Lisboa, Portugal).
    PUB
     
  • [26]
    2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714346
    Lessmann, B., Twellmann, T., Degenhard, A., Nattkemper, T. W., and Leach, M. O. (2004). “Wavelet features for improved tumour detection in DCE-MRI” in Proceedings of Medical Image Understanding and Analysis (MIUA), Rueckert, D., Hajnal, J., and Yang, G. - Z. eds. (London, UK: BMVA), 93-96.
    PUB
     
  • [25]
    2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714369
    Varini, C., Nattkemper, T. W., Degenhard, A., and Wismüller, A. (2004). “Breast MRI data analysis by LLE” in Proceedings of International Joint Conference on Neural Networks, vol. 3, (Montreal, Canada: IEEE), 2449-2554.
    PUB | DOI
     
  • [24]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2714465
    Nattkemper, T. W. (2004). Multivariate image analysis in biomedicine: a methodological review. Journal of Biomedical Informatics 37, 380-391.
    PUB
     
  • [23]
    2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714382
    Saalbach, A., Twellmann, T., Nattkemper, T. W., White, M. J., Khazen, M., and Leach, M. O. (2004). “Visualization of Multivariate Image Data using Image Fusion and Perceptually Optimized Color Scales based on sRGB” in Medical Imaging 2004: Visualization, Image-Guided Procedures, and Display, Robert L. Galloway, J. ed. Proceedings of SPIE, vol. 5367, (San Diego, CA: SPIE).
    PUB | DOI
     
  • [22]
    2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2375262
    Varini, C., Nattkemper, T. W., Degenhard, A., and Wismüller, A. (2004). “Visualisation of Breast Tumour DCE-MRI Data using LLE” in Proc. Medical Image Understanding and Analysis (MIUA) (BMVA), 97-100.
    PUB
     
  • [21]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606041
    Nattkemper, T. W. (2004). Multivariate image analysis in biomedicine. JOURNAL OF BIOMEDICAL INFORMATICS 37, 380-391.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [20]
    2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2017550 OA
    Nattkemper, T. W., Schubert, W., Hermann, T., and Ritter, H. (2004). “A Hybrid System for Cell Detection in Digital Micrographs” in Biomedical Engineering, Proc., Tilg, B. ed., vol. 417, (Innsbruck, Austria: ACTA Press).
    PUB | PDF
     
  • [19]
    2003 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2017545 OA
    Nattkemper, T. W., Hermann, T., Schubert, W., and Ritter, H. (2003). “Look & Listen: Sonification and Visualization of Multiparameter Micrographs” in Engineering in Medicine and Biology Society. Proceedings of the 25th Annual International Conference of the IEEE, vol. 2, (Cancun, Mexico: IEEE), 1311-1314.
    PUB | PDF
     
  • [18]
    2003 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714487
    Twellmann, T., Saalbach, A., Nattkemper, T. W., and Ritter, H. (2003). “Artificial Neural Networks Machine Learning Approaches for Multivariate Image Analysis” in Proceedings Linking mathematical and biological models in cancer research (Magdeburg).
    PUB
     
  • [17]
    2003 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714496
    Ontrup, J., Nattkemper, T. W., Gerstung, O., and Ritter, H. (2003). “A MeSH Term based Distance Measure for Document Retrieval and Labeling Assistance” in Proc. of EMBC2003 (Cancun, Mexico: IEEE EMBS).
    PUB
     
  • [16]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612741
    Nattkemper, T. W., Twellmann, T., Ritter, H., and Schubert, W. (2003). Human vs. machine: evaluation of fluorescence micrographs. Computers in Biology and Medicine 33, 31-43.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [15]
    2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1613503
    Nattkemper, T. W., Wersing, H., Schubert, W., and Ritter, H. (2002). “A neural network architecture for automatic segmentation of fluorescence micrographs” in Neurocomputing NEUROCOMPUTING, vol. 48, (ELSEVIER SCIENCE BV), 357-367.
    PUB | DOI | WoS
     
  • [14]
    2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1886441
    Schubert, W., Friedenberger, M., Haars, R., Bode, M., Philipsen, L., Nattkemper, T. W., and Ritter, H. (2002). Automatic recognition of muscle invasive T-lymphocytes expressing dipeptidyl-peptidase IV (CD26) and analysis of the associated cell surface phenotypes. Journal of Theoretical Medicine 4, 67-74.
    PUB | DOI
     
  • [13]
    2001 | Datenpublikation | PUB-ID: 2763993 OA
    Hermann, T., and Nattkemper, T. W. (2001). Multi-Channel Image Data Analysis using Sonification. Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [12]
    2001 | Bielefelder E-Dissertation | PUB-ID: 2304068 OA
    Nattkemper, T. W. (2001). A neural network-based system for high throughput fluorescence micrograph evaluation. Bielefeld (Germany): Bielefeld University.
    PUB | Dateien verfügbar
     
  • [11]
    2001 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2375220
    Twellmann, T., Nattkemper, T. W., Schubert, W., and Ritter, H. (2001). “Cell Detection in Micrographs of Tissue Sections Using Support Vector Machines” in Proc. of. ICANN 2001 Workshop on Kernel and Subspace Methods for Computer Vision.
    PUB
     
  • [10]
    2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1617028
    Nattkemper, T. W., Ritter, H., and Schubert, W. (2001). A neural classifier enabling high-throughput topological analysis of lymphocytes in tissue sections. IEEE TRANSACTIONS ON INFORMATION TECHNOLOGY IN BIOMEDICINE 5, 138-149.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [9]
    2001 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1886493
    Kämpfe, T., Nattkemper, T. W., and Ritter, H. (2001). “Combining Independent Component Analysis and Self-organizing Maps for Cell Image Classification” in Pattern Recognition, Radig, B., and Florczyk, S. eds. LNCS, vol. 2191, (Berlin: Springer), 262-268.
    PUB
     
  • [8]
    2000 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2017374 OA
    Hermann, T., Nattkemper, T. W., Schubert, W., and Ritter, H. (2000). “Sonification of Multi-Channel Image Data” in Proc. of the Mathematical and Engineering Techniques in Medical and Biological Sciences, Falavar, V. ed. (Las Vegas: CSREA Press), 745-750.
    PUB | PDF
     
  • [7]
    2000 | Datenpublikation | PUB-ID: 2701103 OA
    Hermann, T., Nattkemper, T. W., and Ritter, H. (2000). Supplementary Material for "Sonification of Multi-Channel Image Data". Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [6]
    2000 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2375211
    Nattkemper, T. W., Wersing, H., Schubert, W., and Ritter, H. (2000). “A Neural Network Architecture for Automatic Segmentation of Fluorescence Micrographs” in Proc. of the 8th Europ. Symp. on Art. Neur. Netw. (ESANN), Verleysen, M. ed.
    PUB
     
  • [5]
    2000 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374799
    Nattkemper, T. W., Wersing, H., Schubert, W., and Ritter, H. (2000). “Fluorescence Micrograph Segmentation by Gestalt-Based Feature Binding” in Proc. of the Int. Joint Conf. on Neur. Netw. (IJCNN), vol. 1, (Como, Italy), 248-254.
    PUB
     
  • [4]
    2000 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714744
    Nattkemper, T. W., Wersing, H., Schubert, W., and Ritter, H. (2000). “Automatic Evaluation of Multi-Parameter Fluorescence Micrographs with a Neural Network Architecture” in Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS '00, vol. 2, (Las Vegas, USA), 739-744.
    PUB
     
  • [3]
    1999 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374786
    Nattkemper, T. W., Ritter, H., and Schubert, W. (1999). “Extracting Patterns of Lymphocyte Fluorescence from Digital Microscope Images” in Intelligent Data Analysis in Medicine and Pharmacology (IDAMAP 99), Workshop Notes (AMIA 1999, Washington DC), 79-88.
    PUB
     
  • [2]
    1998 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2714985
    Heidemann, G., Nattkemper, T. W., and Ritter, H. (1998). “Farbe und Symmetrie für die datengetriebene Generierung prägnanter Fokuspunkte” in 4. Workshop Farbbildverarbeitung, Rehrmann, V. ed. Koblenzer Schriften zur Informatik, vol. 9, (Koblenz: Fölbach), 65-71.
    PUB
     
  • [1]
    1996 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2715168
    Heidemann, G., Nattkemper, T. W., Menkhaus, G., and Ritter, H. (1996). “Blicksteuerung durch präattentive Fokussierungspunkte” in Aktives Sehen in technischen und biologischen Systemen : Beiträge zum Workshop der GI-Fachgruppe 1.0.4 Bildverstehen, 3. und 4. Dezember 1996, Hamburg, Mertsching, B. ed. Proceedings in artificial intelligence, vol. 4, (Sankt Augustin: Infix), 109-116.
    PUB
     
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