Tim Wilhelm Nattkemper
tim.nattkemper@uni-bielefeld.dehttps://orcid.org/0000-0002-7986-1158
PEVZ-ID
207 Publikationen
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2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2981135van Kevelaer, R., et al., 2023. A data science approach for multi-sensor marine observatory data monitoring cold water corals (Paragorgia arborea) in two campaigns. PLOS ONE, 18(7): e0282723.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2969165Kloster, M., et al., 2023. Improving deep learning-based segmentation of diatoms in gigapixel-sized virtual slides by object-based tile positioning and object integrity constraint. PLOS ONE, 18(2): e0272103.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964556Tan, M., Langenkämper, D., & Nattkemper, T.W., 2022. The Impact of Data Augmentations on Deep Learning-Based Marine Object Classification in Benthic Image Transects. Sensors, 22(14): 5383.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964311Tzanakis, K., et al., 2022. MetHoS: a platform for large-scale processing, storage and analysis of metabolomics data. BMC Bioinformatics, 23(1): 267.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964509Schoening, T., et al., 2022. Making marine image data FAIR. Scientific data, 9(1): 414.PUB | DOI | WoS | PubMed | Europe PMC
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2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964756Schoening, T., et al., 2022. Publisher Correction: Making marine image data FAIR. Scientific Data , 9(1): 445.PUB | DOI | WoS | PubMed | Europe PMC
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2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2962701Momber, A.W., et al., 2022. Corrigendum to “A data-based model for condition monitoring and maintenance planning for protective coating systems for wind tower structures” [Renew. Energy 186 (2022) 957–973]. Renewable Energy , 188, p 1184.PUB | DOI | WoS
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2959631Zurowietz, M., & Nattkemper, T.W., 2021. Current Trends and Future Directions of Large Scale Image and Video Annotation: Observations From Four Years of BIIGLE 2.0. Frontiers in Marine Science, 8: 760036.PUB | Dateien verfügbar | DOI | Download (ext.) | WoS
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2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2949959Muskat, L., et al., 2021. Image analysis-based quantification of fungal sporulation by automatic conidia counting and gray value correlation. MethodsX, : 101218.PUB | DOI | WoS | PubMed | Europe PMC
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2951226Wüllems, K., et al., 2021. Fast Visual Exploration of Mass Spectrometry Images with Interactive Dynamic Spectral Similarity Pseudocoloring. Scientific Reports, 11: 4606.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950877Möller, T., & Nattkemper, T.W., 2021. ALMI - A Generic Active Learning System for Computational Object Classification in Marine Observation Images. Sensors, 21(4): 1134.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945723Kloster, M., et al., 2020. Deep learning-based diatom taxonomy on virtual slides. Scientific Reports, 10(1): 14416.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943901Zurowietz, M., & Nattkemper, T.W., 2020. An Interactive Visualization for Feature Localization in Deep Neural Networks. Frontiers in Artificial Intelligence - Machine Learning and Artificial Intelligence , 3: 49.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2943127Miralles, A., et al., 2020. Repositories for Taxonomic Data: Where We Are and What is Missing. Systematic biology.PUB | DOI | WoS | PubMed | Europe PMC
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945097Zurowietz, M., & Nattkemper, T.W., 2020. Unsupervised Knowledge Transfer for Object Detection in Marine Environmental Monitoring and Exploration. IEEE Access, 8.PUB | PDF | DOI | Download (ext.) | WoS
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948381Langenkämper, D., et al., 2020. Corrigendum: BIIGLE 2.0 - Browsing and Annotating Large Marine Image Collections. Frontiers in Marine Science, 7: 617268.PUB | DOI | Download (ext.) | WoS
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931637Nattkemper, T.W., & Hattab, G., 2019. SeeVis — 3D space-time cube rendering for visualization of microfluidics image data. Bioinformatics, 35(10), p 1802-1804.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935488Osterloff, J., et al., 2019. Computer vision enables short- and long-term analysis of Lophelia pertusa polyp behaviour and colour from an underwater observatory. Scientific reports, 9(1): 6578.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2935366Zurowietz, M., Langenkämper, D., & Nattkemper, T.W., 2019. BIIGLE2Go - A scalable image annotation system for easy deployment on cruises. In Proceedings of IEEE OCEANS 2019.PUB | DOI | Download (ext.)
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2019 | Konferenzbeitrag | Im Druck | PUB-ID: 2937705Möller, T., Langenkämper, D., & Nattkemper, T.W., In Press. Wind turbine segmentation performing kNN-clustering on superpixel segmentations. In L. Bruzzone & F. Bovolo, eds. Image and Signal Processing for Remote Sensing XXV. Image and Signal Processing for Remote Sensing XXV. Proceedings. no.11155PUB
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932066Zurowietz, M., et al., 2018. MAIA - A machine learning assisted image annotation method for environmental monitoring and exploration . PLoS ONE, 13(11): e0207498.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2018 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2921040Möller, T., Nillsen, I., & Nattkemper, T.W., 2018. Tracking Sponge Size and Behaviour with Fixed Underwater Observatories. In Z. Zhang, et al., eds. Pattern Recognition and Information Forensics. ICPR 2018 International Workshops, CVAUI, IWCF, and MIPPSNA, Beijing, China, August 20-24, 2018, Revised Selected Papers. Lecture Notes in Computer Science. no.11188 Cham: Springer, pp. 45-54.PUB | DOI
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2018 | Konferenzbeitrag | Angenommen | PUB-ID: 2921039Langenkämper, D., van Kevelaer, R., & Nattkemper, T.W., Accepted. Strategies for Tackling the Class Imbalance Problem in Marine Image Classification. Presented at the International Conference on Pattern Recognition 2018, Computer Vision for Automated Analysis of Underwater Imagery Workshop, Beijing.PUB | PDF
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909190Langenkämper, D., et al., 2017. BIIGLE 2.0 - Browsing and Annotating Large Marine Image Collections. Frontiers in Marine Science, 4(March): 83.PUB | Dateien verfügbar | DOI | WoS
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2915349Möller, T., Nilssen, I., & Nattkemper, T.W., 2017. Active learning for the classification of species in underwater images from a fixed observatory. In Proceedings of The IEEE International Conference on Computer Vision Workships (ICCVW). Piscataway, NJ: IEEE, pp. 2891-2897.PUB
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901477Ahmed Raza, S.E., et al., 2016. Robust normalization protocols for multiplexed fluorescence bioimage analysis. BioData Mining, 9(1): 11.PUB | DOI | WoS | PubMed | Europe PMC
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900943Langenkämper, D., et al., 2016. Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations. Frontiers in Genetics, 7: 5.PUB | DOI | WoS | PubMed | Europe PMC
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907705Brink, B., et al., 2016. Omics Fusion - A Platform for Integrative Analysis of Omics Data. Journal of Integrative Bioinformatics, 13(4: SI): 296.PUB | DOI | WoS | PubMed | Europe PMC
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2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2904671Möller, T., Nilssen, I., & Nattkemper, T.W., 2016. Change Detection in Marine Observatory Image Streams using Bi-Domain Feature Clustering. In 2016 23rd International Conference on Pattern Recognition (ICPR). Piscataway, NJ: IEEE, pp. 793-798.PUB | DOI
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2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2906524Möller, T., Nilssen, I., & Nattkemper, T.W., 2016. Data-driven Long Term Change Analysis in Marine Observatory Image Streams. In 2016 ICPR 2nd Workshop on Computer Vision for Analysis of Underwater Imagery (CVAUI 2016) . Proceedings. Piscataway, NJ: IEEE, pp. 13-18.PUB
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2016 | Konferenzbeitrag | Angenommen | PUB-ID: 2904670Langenkämper, D., & Nattkemper, T.W., Accepted. COATL - A Learning Architecture for Online Real-Time Detection and Classification Assistance for Environmental Data. In Proceedings of the International Conference on Pattern Recognition (ICPR).PUB
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2016 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2903653Durden, J., et al., 2016. Perspectives in Visual Imaging for Marine Biology and Ecology: From Acquisition to Understanding. In R. N. Hughes, et al., eds. Oceanography and Marine Biology: An Annual Review. 54. Boca Raton: CRC Press, pp. 1-72.PUB | WoS
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722138Kessler, N., et al., 2015. Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform. Frontiers in Bioinformatics and Computational Biology, 3: 35.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2015 | Datenpublikation | PUB-ID: 2777409Schlueter, J.-P., et al., 2015. Phase Contrast and Fluorescence Bacterial Time-Lapse Microscopy Image Data, Bielefeld University.PUB | Dateien verfügbar | DOI
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2015 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2775956Steinbrink, B., et al., 2015. Integrated Digital Marine Image Analysis and Management - new solutions to handle large image collections in environmental monitoring and exploration. Presented at the GEOHAB, Salvador, Brazil.PUB | PDF
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2015 | Konferenzbeitrag | Im Druck | PUB-ID: 2775947Schoening, T., et al., In Press. Rapid image processing and classification in underwater exploration using advanced high performance computing. In Proc. of the IEEE Oceans. Washington DC, USA: IEEE.PUB
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2655889Osterloff, J., et al., 2014. An overview and rating of benthic image pre-processings for color constancy. Presented at the Marine Imaging Workshop, National Oceanography Centre, Southampton, UK.PUB
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2705712Langenkämper, D., Goesmann, A., & Nattkemper, T.W., 2014. AKE - The Accelerated k-mer Exploration Web-Tool for Rapid Taxonomic Classification and Visualization. BMC Bioinformatics, 15(1): 384.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2656048Möller, T., Nilssen, I., & Nattkemper, T.W., 2014. Introduction of image-based water transparency descriptors to quantify marine snow and turbidity features. A study with data from a stationary observatory. Presented at the MIW 2014 - Marine Imaging Workshop, Southampton.PUB | PDF
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706029Kessler, N., et al., 2014. ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis. PLoS ONE, 9(11): e113909.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2683648Osterloff, J., et al., 2014. Ranking Color Correction Algorithms using Cluster Indices. Presented at the ICPR Workshop on Computer Vision for Analysis of Underwater Imagery, Stockhom.PUB | DOI | Download (ext.)
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2690300Kölling, J., Zurowietz, M., & Nattkemper, T.W., 2014. Interactive Exploration of Spatial Distribution in Mass Spectrometry Imaging. Presented at the 4th Symposium on Biological Data Visualization (BioVis), Boston, MA, USA.PUB | Download (ext.)
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2014 | Konferenzbeitrag | Im Druck | PUB-ID: 2690335Rathke, M., et al., In Press. Interactive and dynamic web-based visual exploration of high dimensional bioimages with real time clustering. Presented at the German Conference on Bioinformatics (GCB), Bielefeld, Germany.PUB
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2690322Kölling, J., Zurowietz, M., & Nattkemper, T.W., 2014. Interactive Exploration of Spatial Distribution in Mass Spectrometry Imaging. Presented at the 22nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, MA, USA.PUB | Download (ext.)
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2676334Möller, T., et al., 2014. Novelty detection in time lapse image data. Presented at the Geohab 2014, Lorne, Victoria, Australia.PUB
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2014 | Konferenzband | Veröffentlicht | PUB-ID: 2901695R. Giegerich, R. Hofestädt, & T. W. Nattkemper, eds., 2014. German Conference on Bioinformatics 2014. GI-Edition: lecture notes in informatics, 235.PUB
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2775961Schoening, T., et al., 2014. Image-based marine resource exploration and biodiversity assessment with MAMAS (Marine data Asset Management and Analysis System). Presented at the UMI (Underwater Mining Institute), Lisbon, Portugal.PUB
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2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2610134Schoening, T., et al., In Press. Ultra-fast segmentation and quantification of poly-metallic nodule coverage in high-resolution digital images. In Proceedings of the UMI 2013.PUB
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2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2537912Rubiano Castellanos, C.C., Merkle, T., & Nattkemper, T.W., In Press. Using random forest to find Nuclear Export Signals (NESs) in proteins of Arabidopsis thaliana. Presented at the BIOINFORMATICS Conf., Barcelona, Spain.PUB
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2013 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2656054Schoening, T., Bergmann, M., & Nattkemper, T.W., 2013. A machine-learning system for the automated detection of megafauna and its applicability unseen footage. Presented at the GEOHAB, Rome.PUB
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2625914Bergmann, T., et al., 2013. Categorization of two-photon microscopy images of human cartilage into states of osteoarthritis. Osteoarthritis And Cartilage, 21(8), p 1074-1082.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2610762Nattkemper, T.W., 2013. Cluster Analysis. In W. Dubitzky, et al., eds. Encyclopedia of Systems Biology. New York, NY : Springer.PUB
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2013 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2656093Kuhn, T., et al., 2013. Application of Hydro-Acoustic and Video Data for the Exploration of Manganese Nodule Fields. Presented at the ISOPE OMS, Szczecin, Poland.PUB
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610129Kessler, N., et al., 2013. MeltDB 2.0 - Advances of the metabolomics software system. Bioinformatics, 29(19), p 2452-2459.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2542584Held, C., et al., 2013. Approaches to automatic parameter fitting in a microscopy image segmentation pipeline: An exploratory parameter space analysis. Journal of Pathology Informatics, 4(2): 5.PUB | DOI | PubMed | Europe PMC
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2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2538625Bonte, A., et al., In Press. Einsatz von Protein- und Metabolit-Profiling-Methoden zur Unterscheidung von ökologischem und konventionellem Weizen. Presented at the 12. Wissenschaftstagung Ökologischer Landbau „Ideal und Wirklichkeit – Perspektiven Ökologischer Landbewirtschaftung“, Bonn, Germany.PUB
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2455753Raza, S.-E.-A., et al., 2012. RAMTaB: Robust Alignment of Multi-Tag Bioimages. PLoS ONE, 7(2): e30894.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2012 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2656105Figueiredo Creed, M., et al., 2012. Effects of drill cuttings on a deep water rhodolith bed: an integrated approach. Presented at the V International Rhodolith Workshop, Granada, Spain.PUB
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2656050Schoening, T., Kuhn, T., & Nattkemper, T.W., 2012. Estimation of poly-metallic nodule coverage in benthic images. In Proc. of the 41st Conference of the Underwater Mining Institute (UMI).PUB
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2012 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2656067Schoening, T., et al., 2012. The impact of experts’ inter- and intra-observer agreements on computational object classification in images from the deep seafloor of the HAUSGARTEN observatory. Presented at the 13th International Deep-Sea Biology Symposium, Wellington, New Zealand.PUB
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232Trötschel, C., et al., 2012. Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation. Molecular & Cellular Proteomics, 11(8), p 512-526.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2536156Zhou, L., et al., 2012. Re-Expression of IGF-II Is Important for Beta Cell Regeneration in Adult Mice. PLoS ONE, 7(9): e43623.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2481783Kölling, J., et al., 2012. WHIDE - A web tool for visual data mining colocation patterns in multivariate bioimages. Bioinformatics, 28(8), p 1143-1150.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2012 | Konferenzbeitrag | PUB-ID: 2515700Schoening, T., et al., 2012. Investigation of hidden parameters influencing the automated object detection in benthic images. Presented at the IEEE OCEANS 2012 MTS/IEEE, Hampton Roads, Virginia, USA.PUB
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2012 | Konferenzbeitrag | PUB-ID: 2515671Held, C., Nattkemper, T.W., & Wittenberg, T., 2012. Approaches to automatic parameter fitting in a microscopy image segmentation pipeline: An exploratory parameter space analysis. Presented at the Histopathology Image Analysis (HIMA) workshop at MICCAI 2012, Nizza.PUB
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300114Loyek, C., et al., 2011. Web2.0 paves new ways for collaborative and exploratory analysis of Chemical Compounds in Spectrometry Data. Journal of Integrative Bioinformatics, 8(2), p 158.PUB | DOI | PubMed | Europe PMC
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300232Loyek, C., et al., 2011. A Web2.0 Strategy for the Collaborative Analysis of Complex Bioimages. In J. Gama, E. Bradley, & J. Hollmén, eds. Advances in Intelligent Data Analysis X: 10th International Symposium, IDA 2011, Porto, Portugal, October 29-31, 2011. Proceedings. Lecture Notes in Computer Science. no.7014 Berlin, Heidelberg: Springer, pp. 258-269.PUB | PDF | DOI
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2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2656082Purser, A., et al., 2011. How to squeeze even more from your Terabytes of video data!.PUB
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2011 | Konferenzbeitrag | Im Druck | PUB-ID: 2315356Bergmann, T., et al., In Press. Categorization of 2-photon microscopy images of human articular cartilage into states of arthritis. Presented at the Tagung der Biomedizinischen Technik (BMT), Freiburg, Germany.PUB
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300102Arif, M., et al., 2011. Quantification of Cell Infection Caused by Listeria monocytogenes Invasion. Journal of Biotechnology, 154(1), p 76-83.PUB | DOI | PubMed | Europe PMC
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2323705Langenkämper, D., et al., 2011. TICAL - a web-tool for multivariate image clustering and data topology preserving visualization. Presented at the Microscopic Image Analysis with Applications in Biology (MIAAB), Heidelberg, Germany.PUB | PDF | Download (ext.)
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093532Scherbart, A., & Nattkemper, T.W., 2011. Looking inside self-organizing map ensembles with resampling and negative correlation learning. Neural Networks, 24(1), p 130-141.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300235Schoening, T., Hans, V., & Nattkemper, T.W., 2011. Towards improved epilepsia diagnosis by unsupervised segmentation of neuropathology tissue sections using Ripley’s-L features. In Bildverarbeitung für die Medizin 2011:Algorithmen - Systeme - Anwendungen Proceedings des Workshops vom 20. - 22. März 2011 in Lübeck. Informatik aktuell. Berlin, Heidelberg: Springer, pp. 44-48.PUB | DOI
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929340Burgemeister, S., et al., 2010. CellViCAM-Cell viability classification for animal cell cultures using dark field micrographs. JOURNAL OF BIOTECHNOLOGY, 149(4), p 310-316.PUB | DOI | WoS | PubMed | Europe PMC
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794419Herold, J., et al., 2010. Integrating semantic annotation and information visualization for the analysis of multichannel fluorescence micrographs from pancreatic tissue. Computerized Medical Imaging and Graphics, 34(6), p 446-452.PUB | DOI | WoS | PubMed | Europe PMC
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929311Gölzhäuser, A., et al., 2010. BioImaging: Contributions from biology, physics and informatics. Journal of Biotechnology, 149(4), p 227-228.PUB | DOI | WoS | PubMed | Europe PMC
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929335Herold, J., Schubert, W., & Nattkemper, T.W., 2010. Automated detection and quantification of fluorescently labeled synapses in murine brain tissue sections for high throughput applications. JOURNAL OF BIOTECHNOLOGY, 149(4), p 299-309.PUB | DOI | WoS | PubMed | Europe PMC
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018427Qureshi, H., et al., 2009. A Robust Adaptive Wavelet-based Method for Classification of Meningioma Histology Images. In MICCAI«2009 Workshop on Optical Tissue Image Analysis in Microscopy, Histology, and Endoscopy.PUB
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531Albaum, S., et al., 2009. Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics, 25(23), p 3128-3134.PUB | DOI | WoS | PubMed | Europe PMC
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1591448Saalbach, A., et al., 2009. On the application of (topographic) independent and tree-dependent component analysis for the examination of DCE-MRI data. In Biomedical Signal Processing and Control. BIOMEDICAL SIGNAL PROCESSING AND CONTROL. no.4 ELSEVIER SCI LTD, pp. 247-253.PUB | DOI | WoS | PubMed | Europe PMC
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018405Loyek, C., Woermann, F.G., & Nattkemper, T.W., 2008. Detection of Focal Cortical Dysplasia in MRI Using Textural Features. In T. Tolxdorff, ed. Proceedings of BVM 2008. Informatik aktuell. Berlin, Heidelberg: Springer Verlag, pp. 432-436.PUB | DOI
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585611Wei, N., et al., 2008. A machine vision system for automated non-invasive assessment of cell viability via dark field microscopy, wavelet feature selection and classification. BMC Bioinformatics, 9(1), p 449.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587052Martin, C., et al., 2008. Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification. Bioinformatics, 24(14), p 1568-1574.PUB | DOI | WoS | PubMed | Europe PMC
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588286Twellmann, T., et al., 2008. Model-free visualization of suspicious lesions in breast MRI based on supervised and unsupervised learning. ENGINEERING APPLICATIONS OF ARTIFICIAL INTELLIGENCE, 21(2), p 129-140.PUB | DOI | WoS | PubMed | Europe PMC
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018409Martin, C., & Nattkemper, T.W., 2008. A Tree Index to Support Clustering Based Exploratory Data Analysis. In Bioinformatics Research and Development : Second International Conference, BIRD 2008 Vienna, Austria, July 7-9, 2008 Proceedings. Communications in Computer and Information Science. no.13 Berlin, Heidelberg: Springer, pp. 1-15.PUB | DOI
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381Albaum, S., et al., 2008. ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract). In HUPO 7th Annual World Congress.PUB
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1630738Pobigaylo, N., et al., 2008. Identification of genes relevant to symbiosis and competitiveness in Sinorhizobium meliloti using signature-tagged mutants. MOLECULAR PLANT-MICROBE INTERACTIONS, 21(2), p 219-231.PUB | DOI | WoS | PubMed | Europe PMC
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2007 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2714002Lessmann, B., et al., 2007. Use of automated image analysis to detect changes in megafaunal densities at HAUSGARTEN (79°N west off Svalbard) between 2002 and 2004. Presented at the EMBS - 42nd European Marine Biology Symposium, Kiel, Germany.PUB
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2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2714021Nattkemper, T.W., Degenhard, A., & Twellmann, T., 2007. Breast Tumor Classification and Visualization with Machine-Learning Approaches. In M. A. Hayat, ed. Cancer Imaging - Lung and breast carcinomas. no.1 Amsterdam : Academic Press, pp. 309-321.PUB
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2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2714040Scherbart, A., et al., 2007. Neural Network Approach for Mass Spectrometry Prediction by Peptide Prototyping. In J. M. Sá de, ed. Artificial Neural Networks – ICANN 2007 - 17th International Conference, Porto, Portugal, September 9-13, 2007, Proceedings, Part II. Lecture Notes in Computer Science. no.4669 Berlin: Springer, pp. 90-99.PUB | DOI
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2714032Lessmann, B., et al., 2007. Multiscale Analysis of MR Mammography Data. Zeitschrift für Medizinische Physik (german journal of medical physics), 17(3), p 166-171.PUB | DOI | WoS | PubMed | Europe PMC
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595739Wei, N., et al., 2007. In situ dark field microscopy for on-line monitoring of yeast cultures. BIOTECHNOLOGY LETTERS, 29(3), p 373-378.PUB | DOI | WoS | PubMed | Europe PMC
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593120Wei, N., et al., 2007. An in situ probe for on-line monitoring of cell density and viability on the basis of dark field microscopy in conjunction with image processing and supervised machine learning. Biotechnology and Bioengineering, 97(6), p 1489-1500.PUB | DOI | WoS | PubMed | Europe PMC
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1630749Lessmann, B., et al., 2007. A method for linking computed image features to histological semantics in neuropathology. Journal of Biomedical Informatics, 40(6), p 631-641.PUB | DOI | WoS | PubMed | Europe PMC
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2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2018416Nattkemper, T.W., Degenhard, A., & Twellmann, T., 2007. Breas. In M. A. Hayat, ed. Cancer Imaging - Lung and breast carcinomas. no.1 Academic Press, pp. 309-324.PUB
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2714075Deters grosse, H., Timm, W., & Nattkemper, T.W., 2006. REEFSOM - A Metaphoric Data Display for Exploratory Data Mining : journal of new media in neural and cognitive science and education. Brains, Minds and Media, 2(bmm305).PUB | Download (ext.)
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374232Varini, C., et al., 2006. Visual Exploration of Pathology Images by a Discrete Wavelet Transform Preprocessed Locally Linear Embedding. In H. Handels, et al., eds. Bildverarbeitung für die Medizin. Informatik aktuell. Berlin : Springer, pp. 66-70.PUB | Download (ext.)
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374254Lessmann, B., et al., 2006. Content Based Image Retrieval for Dynamic Time Series Data. In Proceedings of BVM. pp. 61-65.PUB
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600329Miksch, G., et al., 2006. A rapid reporter system using GFP as a reporter protein for identification and screening of synthetic stationary-phase promoters in Escherichia coli. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 70(2), p 229-236.PUB | DOI | WoS | PubMed | Europe PMC
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1597259Martin, C., Deters, H. grosse, & Nattkemper, T.W., 2006. Fusing biomedical multi-modal data for exploratory data analysis. In S. Kollias, ed. ARTIFICIAL NEURAL NETWORKS - ICANN 2006, PT 2. no.4132 Berlin, Heidelberg: SPRINGER-VERLAG BERLIN, pp. 798-807.PUB | DOI | WoS
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598838Pobigaylo, N., et al., 2006. Construction of a large signature-tagged mini-Tn5 transposon library and its application to mutagenesis of Sinorhizobium meliloti. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 72(6), p 4329-4337.PUB | DOI | WoS | PubMed | Europe PMC
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596731Varini, C., Degenhard, A., & Nattkemper, T.W., 2006. Visual exploratory analysis of DCE-MRI data in breast cancer by dimensional data reduction: A comparative study. BIOMEDICAL SIGNAL PROCESSING AND CONTROL, 1(1), p 56-63.PUB | DOI | WoS
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603560Nattkemper, T.W., et al., 2005. Evaluation of radiological features for breast tumour classification in clinical screening with machine learning methods. ARTIFICIAL INTELLIGENCE IN MEDICINE, 34(2), p 129-139.PUB | DOI | WoS | PubMed | Europe PMC
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714153Lessmann, B., et al., 2005. Clustering approach for wavelet transformed MR image data. In Proceedings of the 14th International Conference of Medical Physics. pp. 1412.PUB
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714331Saalbach, A., Twellmann, T., & Nattkemper, T.W., 2005. Spectral Clustering for Data Categorization based on Self-Organizing Maps. In N. Nasser M., ed. Applications of Neural Networks and Machine Learning in Image Processing IX. no.5673 San Jose, CA, pp. 12-18.PUB
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2005 | Monographie | PUB-ID: 2714309Bettenworth, F., et al., 2005. An Online Monitoring System for the Screening of Stationary-Phase Promoters in E. Coli using GFP as a Reporter Protein,PUB
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374666Twellmann, T., et al., 2005. An Adaptive Colour Scale for Comparison of Pseudo Colouring Techniques for DCE-MRI Data. Presented at the Workshop für Bildverarbeiteung für die MedzinPUB
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374546Saalbach, A., et al., 2005. A hyperbolic topographic mapping for proximity data. In Proc. of the IASTED International Conference of Artificial Intelligence and Applications. no.2005 pp. 106-111.PUB
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2714263Twellmann, T., Lichte, O., & Nattkemper, T.W., 2005. An Adaptive Tissue Characterisation Network for Model-Free Visualisation of Dynamic Contrast-Enhanced Magnetic Resonance Image Data. IEEE Transactions on Medical Imaging, 24(10), p 1256-1266.PUB | DOI | WoS | PubMed | Europe PMC
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2714340Nattkemper, T.W., & Wismüller, A., 2005. Tumour feature analysis with unsupervised machine learning. Medical Image Analysis, 9(4), p 344-351.PUB | DOI | WoS | PubMed | Europe PMC
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603030Nattkemper, T.W., & Wismuller, A., 2005. Tumor feature visualization with unsupervised learning. MEDICAL IMAGE ANALYSIS, 9(4), p 344-351.PUB | DOI | WoS | PubMed | Europe PMC
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946602Wei, N., et al., 2005. Reagent-free automatic cell viability determination using neural networks based machine vision and dark-field microscopy in Saccharomyces cerevisiae. Conf Proc IEEE Eng Med Biol Soc, 6, p 6305-6308.PUB | DOI | PubMed | Europe PMC
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602344Prank, K., et al., 2005. Machine learning approaches for phenotype-genotype mapping: predicting heterozygous mutations in the CYP21B gene from steroid profiles. EUROPEAN JOURNAL OF ENDOCRINOLOGY, 153(2), p 301-305.PUB | DOI | WoS | PubMed | Europe PMC
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601519Varini, C., Degenhard, A., & Nattkemper, T.W., 2005. ISOLLE: Locally linear embedding with geodesic distance. In A. Jorge, ed. KNOWLEDGE DISCOVERY IN DATABASES: PKDD 2005. Lecture notes in computer science ; 3721 : Lecture notes in artificial intelligence. no.3721 Berlin, Heidelberg: SPRINGER-VERLAG BERLIN, pp. 331-342.PUB | DOI | WoS
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601848Miksch, G., et al., 2005. Libraries of synthetic stationary-phase and stress promoters as a tool for fine-tuning of expression of recombinant proteins in Escherichia coli. In Journal of Biotechnology. JOURNAL OF BIOTECHNOLOGY. no.120 ELSEVIER SCIENCE BV, pp. 25-37.PUB | DOI | WoS | PubMed | Europe PMC
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601906Lessmann, B., et al., 2005. SOM-based wavelet filtering for the exploration of medical images. In W. Duch, ed. ARTIFICIAL NEURAL NETWORKS: BIOLOGICAL INSPIRATIONS - ICANN 2005, PT 1, PROCEEDINGS. Lecture notes in computer science. no.3696 Berlin, Heidelberg: SPRINGER-VERLAG BERLIN, pp. 671-676.PUB | DOI | WoS
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602177Twellmann, T., Lichte, O., & Nattkemper, T.W., 2005. An adaptive tissue characterization network for model-free visualization of dynamic contrast-enhanced magnetic resonance image data. IEEE TRANSACTIONS ON MEDICAL IMAGING, 24(10), p 1256-1266.PUB | DOI | WoS | PubMed | Europe PMC
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946892Nattkemper, T.W., 2004. Automatic segmentation of digital micrographs: a survey. Stud Health Technol Inform, 107(Pt 2), p 847-851.PUB | PubMed | Europe PMC
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946838Twellmann, T., et al., 2004. Detection of suspicious lesions in dynamic contrast enhanced MRI data. The 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 1, p 454-457.PUB | PubMed | Europe PMC
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2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714397Kämpfe, T., Nattkemper, T.W., & Ritter, H., 2004. AQUISAR: Image Retrieval in Underwater Webcam Images. In WIAMIS 2004 : 5th International Workshop on Image Analysis for Multimedia Interactive Services. Lisboa, Portugal.PUB
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2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714346Lessmann, B., et al., 2004. Wavelet features for improved tumour detection in DCE-MRI. In D. Rueckert, J. Hajnal, & G. - Z. Yang, eds. Proceedings of Medical Image Understanding and Analysis (MIUA). London, UK: BMVA, pp. 93-96.PUB
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2714465Nattkemper, T.W., 2004. Multivariate image analysis in biomedicine: a methodological review. Journal of Biomedical Informatics, 37(5), p 380-391.PUB
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2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714382Saalbach, A., et al., 2004. Visualization of Multivariate Image Data using Image Fusion and Perceptually Optimized Color Scales based on sRGB. In J. Robert L. Galloway, ed. Medical Imaging 2004: Visualization, Image-Guided Procedures, and Display. Proceedings of SPIE. no.5367 San Diego, CA: SPIE.PUB | DOI
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2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2375262Varini, C., et al., 2004. Visualisation of Breast Tumour DCE-MRI Data using LLE. In Proc. Medical Image Understanding and Analysis (MIUA). BMVA, pp. 97-100.PUB
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606041Nattkemper, T.W., 2004. Multivariate image analysis in biomedicine. JOURNAL OF BIOMEDICAL INFORMATICS, 37(5), p 380-391.PUB | DOI | WoS | PubMed | Europe PMC
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2003 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2017545Nattkemper, T.W., et al., 2003. Look & Listen: Sonification and Visualization of Multiparameter Micrographs. In Engineering in Medicine and Biology Society. Proceedings of the 25th Annual International Conference of the IEEE. no.2 Cancun, Mexico: IEEE, pp. 1311-1314.PUB | PDF
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2003 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714487Twellmann, T., et al., 2003. Artificial Neural Networks Machine Learning Approaches for Multivariate Image Analysis. In Proceedings Linking mathematical and biological models in cancer research. Magdeburg.PUB
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2003 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714496Ontrup, J., et al., 2003. A MeSH Term based Distance Measure for Document Retrieval and Labeling Assistance. In Proc. of EMBC2003. Cancun, Mexico: IEEE EMBS.PUB
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612741Nattkemper, T.W., et al., 2003. Human vs. machine: evaluation of fluorescence micrographs. Computers in Biology and Medicine, 33(1), p 31-43.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1886441Schubert, W., et al., 2002. Automatic recognition of muscle invasive T-lymphocytes expressing dipeptidyl-peptidase IV (CD26) and analysis of the associated cell surface phenotypes. Journal of Theoretical Medicine, 4(1), p 67-74.PUB | DOI
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2001 | Datenpublikation | PUB-ID: 2763993Hermann, T., & Nattkemper, T.W., 2001. Multi-Channel Image Data Analysis using Sonification, Bielefeld University.PUB | Dateien verfügbar | DOI
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2001 | Bielefelder E-Dissertation | PUB-ID: 2304068Nattkemper, T.W., 2001. A neural network-based system for high throughput fluorescence micrograph evaluation, Bielefeld (Germany): Bielefeld University.PUB | Dateien verfügbar
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2001 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2375220Twellmann, T., et al., 2001. Cell Detection in Micrographs of Tissue Sections Using Support Vector Machines. In Proc. of. ICANN 2001 Workshop on Kernel and Subspace Methods for Computer Vision.PUB
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2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1617028Nattkemper, T.W., Ritter, H., & Schubert, W., 2001. A neural classifier enabling high-throughput topological analysis of lymphocytes in tissue sections. IEEE TRANSACTIONS ON INFORMATION TECHNOLOGY IN BIOMEDICINE, 5(2), p 138-149.PUB | DOI | WoS | PubMed | Europe PMC
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2001 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1886493Kämpfe, T., Nattkemper, T.W., & Ritter, H., 2001. Combining Independent Component Analysis and Self-organizing Maps for Cell Image Classification. In B. Radig & S. Florczyk, eds. Pattern Recognition. LNCS. no.2191 Berlin: Springer, pp. 262-268.PUB
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2000 | Datenpublikation | PUB-ID: 2701103Hermann, T., Nattkemper, T.W., & Ritter, H., 2000. Supplementary Material for "Sonification of Multi-Channel Image Data", Bielefeld University.PUB | Dateien verfügbar | DOI
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2000 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2375211Nattkemper, T.W., et al., 2000. A Neural Network Architecture for Automatic Segmentation of Fluorescence Micrographs. In M. Verleysen, ed. Proc. of the 8th Europ. Symp. on Art. Neur. Netw. (ESANN).PUB
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2000 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374799Nattkemper, T.W., et al., 2000. Fluorescence Micrograph Segmentation by Gestalt-Based Feature Binding. In Proc. of the Int. Joint Conf. on Neur. Netw. (IJCNN). no.1 Como, Italy, pp. 248-254.PUB
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2000 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714744Nattkemper, T.W., et al., 2000. Automatic Evaluation of Multi-Parameter Fluorescence Micrographs with a Neural Network Architecture. In Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS '00. no.2 Las Vegas, USA, pp. 739-744.PUB
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1999 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374786Nattkemper, T.W., Ritter, H., & Schubert, W., 1999. Extracting Patterns of Lymphocyte Fluorescence from Digital Microscope Images. In Intelligent Data Analysis in Medicine and Pharmacology (IDAMAP 99), Workshop Notes. AMIA 1999, Washington DC, pp. 79-88.PUB
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1998 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2714985Heidemann, G., Nattkemper, T.W., & Ritter, H., 1998. Farbe und Symmetrie für die datengetriebene Generierung prägnanter Fokuspunkte. In V. Rehrmann, ed. 4. Workshop Farbbildverarbeitung. Koblenzer Schriften zur Informatik. no.9 Koblenz: Fölbach, pp. 65-71.PUB
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1996 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2715168Heidemann, G., et al., 1996. Blicksteuerung durch präattentive Fokussierungspunkte. In B. Mertsching, ed. Aktives Sehen in technischen und biologischen Systemen : Beiträge zum Workshop der GI-Fachgruppe 1.0.4 Bildverstehen, 3. und 4. Dezember 1996, Hamburg. Proceedings in artificial intelligence. no.4 Sankt Augustin: Infix, pp. 109-116.PUB