Tim Wilhelm Nattkemper
tim.nattkemper@uni-bielefeld.dehttps://orcid.org/0000-0002-7986-1158
PEVZ-ID
207 Publikationen
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2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2984580Rogers AD, Appiah-Madson H, Ardron JA, Bax NJ, Bhadury P, Brandt A, Buttigieg P-L, De Clerck O, Delgado C, Distel DL, Glover A, Gobin J, Guilhon M, Hampton S, Harden-Davies H, Hebert P, Hynes L, Lowe M, MacIntyre S, Madduppa H, de Azevedo Mazzuco AC, McCallum A, McOwen C, Nattkemper TW, Odido M, O'Hara T, Osborn K, Pouponneau A, Provoost P, Rabone M, Ramirez-Llodra E, Scott L, Sink KJ, Turk D, Watanabe HK, Weatherdon LV, Wernberg T, Williams S, Woodall L, Wright DJ, Zeppilli D, Steeds O (2023)PUB | DOI | WoS
Accelerating ocean species discovery and laying the foundations for the future of marine biodiversity research and monitoring.
Frontiers in Marine Science 10: 1224471. -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2981135van Kevelaer R, Langenkämper D, Nilssen I, Buhl-Mortensen P, Nattkemper TW (2023)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
A data science approach for multi-sensor marine observatory data monitoring cold water corals (Paragorgia arborea) in two campaigns.
PLOS ONE 18(7): e0282723. -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2979717Momber AW, Langenkämper D, Möller T, Nattkemper TW (2023)PUB | DOI | WoS
The exploration and annotation of large amounts of visual inspection data for protective coating systems on stationary marine steel structures.
Ocean Engineering 278: 114337. -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2969165Kloster M, Burfeid-Castellanos AM, Langenkämper D, Nattkemper TW, Beszteri B (2023)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Improving deep learning-based segmentation of diatoms in gigapixel-sized virtual slides by object-based tile positioning and object integrity constraint.
PLOS ONE 18(2): e0272103. -
2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2968512Momber A, Langenkämper D, Möller T, Nattkemper TW (2023)PUB | DOI | WoS
Eine Online-Plattform für die Verarbeitung digitaler visueller Daten zur Zustandsbeschreibung von Beschichtungssystemen an maritimen Stahlbauten.
Stahlbau . -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965093Langenkämper D, Mogstad AA, Hansen IM, Baussant T, Bergsagel O, Nilssen I, Frost TK, Nattkemper TW (2022)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Exploring time series of hyperspectral images for cold water coral stress response analysis.
PLoS ONE 17(8): e0272408. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964556Tan M, Langenkämper D, Nattkemper TW (2022)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
The Impact of Data Augmentations on Deep Learning-Based Marine Object Classification in Benthic Image Transects.
Sensors 22(14): 5383. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964311Tzanakis K, Nattkemper TW, Niehaus K, Albaum S (2022)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
MetHoS: a platform for large-scale processing, storage and analysis of metabolomics data.
BMC Bioinformatics 23(1): 267. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966492Burfeid-Castellanos AM, Kloster M, Beszteri S, Postel U, Spyra M, Zurowietz M, Nattkemper TW, Beszteri B (2022)PUB | PDF | DOI | Download (ext.) | WoS | Preprint
A Digital Light Microscopic Method for Diatom Surveys Using Embedded Acid-Cleaned Samples.
Water 14(20): 3332. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964509Schoening T, Durden JM, Faber C, Felden J, Heger K, Hoving H-JT, Kiko R, Koser K, Krammer C, Kwasnitschka T, Moller KO, Nakath D, NaSS A, Nattkemper TW, Purser A, Zurowietz M (2022)PUB | DOI | WoS | PubMed | Europe PMC
Making marine image data FAIR.
Scientific data 9(1): 414. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964756Schoening T, Durden JM, Faber C, Felden J, Heger K, Hoving H-JT, Kiko R, Koser K, Krammer C, Kwasnitschka T, Moller KO, Nakath D, NaSS A, Nattkemper TW, Purser A, Zurowietz M (2022)PUB | DOI | WoS | PubMed | Europe PMC
Publisher Correction: Making marine image data FAIR.
Scientific Data 9(1): 445. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2962701Momber AW, Nattkemper TW, Langenkämper D, Möller T, Bruen D, Schaumann P, Shojai S (2022)PUB | DOI | WoS
Corrigendum to “A data-based model for condition monitoring and maintenance planning for protective coating systems for wind tower structures” [Renew. Energy 186 (2022) 957–973].
Renewable Energy 188: 1184. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2960547Momber AW, Nattkemper TW, Langenkämper D, Möller T, Brün D, Schaumann P, Shojai S (2022)PUB | DOI
A data-based model for condition monitoring and maintenance planning for protective coating systems for wind tower structures.
Renewable Energy. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2959631Zurowietz M, Nattkemper TW (2021)PUB | Dateien verfügbar | DOI | Download (ext.) | WoS
Current Trends and Future Directions of Large Scale Image and Video Annotation: Observations From Four Years of BIIGLE 2.0.
Frontiers in Marine Science 8: 760036. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952736Canals M, Pham CK, Bergmann M, Gutow L, Hanke G, van Sebille E, Angiolillo M, Buhl-Mortensen L, Cau A, Ioakeimidis C, Kammann U, Lundsten L, Papatheodorou G, Purser A, Sanchez-Vidal A, Schulz M, Vinci M, Chiba S, Galgani F, Langenkämper D, Moller T, Nattkemper TW, Ruiz M, Suikkanen S, Woodall L, Fakiris E, Jack MEM, Giorgetti A (2021)PUB | PDF | DOI | WoS
The quest for seafloor macrolitter: a critical review of background knowledge, current methods and future prospects.
Environmental Research Letters 16(2): 023001. -
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2960196Momber AW, Möller T, Langenkämper D, Nattkemper TW, Bruen D (2021)PUB | DOI | WoS
A Digital Twin concept for the prescriptive maintenance of protective coating systems on wind turbine structures.
Wind Engineering: 0309524X211060550. -
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2949959Muskat L, Kerkhoff Y, Humbert P, Nattkemper TW, Eilenberg J, Patel AV (2021)PUB | DOI | WoS | PubMed | Europe PMC
Image analysis-based quantification of fungal sporulation by automatic conidia counting and gray value correlation.
MethodsX: 101218. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956291Momber A, Nattkemper TW, Langenkämper D, Möller T, Bruen D, Schaumann P, Shojai S (2021)PUB | DOI | WoS
Digitalisierung und Verarbeitung von Sensordaten für die Zustandsbewertung von Oberflächenschutzsystemen stählerner Türme von Onshore-Windenergieanlagen.
Stahlbau 90(7): 528-541. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2951226Wüllems K, Zurowietz A, Zurowietz M, Schneider R, Bednarz H, Niehaus K, Nattkemper TW (2021)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Fast Visual Exploration of Mass Spectrometry Images with Interactive Dynamic Spectral Similarity Pseudocoloring.
Scientific Reports 11: 4606. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950877Möller T, Nattkemper TW (2021)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
ALMI - A Generic Active Learning System for Computational Object Classification in Marine Observation Images.
Sensors 21(4): 1134. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942079Gemeinholzer B, Vences M, Beszteri B, Bruy T, Felden J, Kostadinov I, Mirailes A, Nattkemper TW, Printzen C, Renz J, Rybalka N, Schuster T, Weibulat T, Wilke T, Renner SS (2020)PUB | PDF | DOI | WoS
Data storage and data re-use in taxonomy-the need for improved storage and accessibility of heterogeneous data.
ORGANISMS DIVERSITY & EVOLUTION 20(1): 1-8. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945723Kloster M, Langenkämper D, Zurowietz M, Beszteri B, Nattkemper TW (2020)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Deep learning-based diatom taxonomy on virtual slides.
Scientific Reports 10(1): 14416. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943901Zurowietz M, Nattkemper TW (2020)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
An Interactive Visualization for Feature Localization in Deep Neural Networks.
Frontiers in Artificial Intelligence - Machine Learning and Artificial Intelligence 3: 49. -
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2943127Miralles A, Bruy T, Wolcott K, Scherz MD, Begerow D, Beszteri B, Bonkowski M, Felden J, Gemeinholzer B, Glaw F, Glockner FO, Hawlitschek O, Kostadinov I, Nattkemper TW, Printzen C, Renz J, Rybalka N, Stadler M, Weibulat T, Wilke T, Renner SS, Vences M (2020)PUB | DOI | WoS | PubMed | Europe PMC
Repositories for Taxonomic Data: Where We Are and What is Missing.
Systematic biology. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945097Zurowietz M, Nattkemper TW (2020)PUB | PDF | DOI | Download (ext.) | WoS
Unsupervised Knowledge Transfer for Object Detection in Marine Environmental Monitoring and Exploration.
IEEE Access 8. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948381Langenkämper D, Zurowietz M, Schoening T, Nattkemper TW (2020)PUB | DOI | Download (ext.) | WoS
Corrigendum: BIIGLE 2.0 - Browsing and Annotating Large Marine Image Collections.
Frontiers in Marine Science 7: 617268. -
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936069Langenkämper D, Simon-Lledó E, Hosking B, Jones DOB, Nattkemper TW (2019)PUB | PDF | DOI | WoS | PubMed | Europe PMC
On the impact of Citizen Science-derived data quality on deep learning based classification in marine images.
PLOS ONE 14(6): e0218086. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931637Nattkemper TW, Hattab G (2019)PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
SeeVis — 3D space-time cube rendering for visualization of microfluidics image data.
Bioinformatics 35(10): 1802-1804. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935488Osterloff J, Nilssen I, Jarnegren J, Van Engeland T, Buhl-Mortensen P, Nattkemper TW (2019)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Computer vision enables short- and long-term analysis of Lophelia pertusa polyp behaviour and colour from an underwater observatory.
Scientific reports 9(1): 6578. -
2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2935366Zurowietz M, Langenkämper D, Nattkemper TW (2019)PUB | DOI | Download (ext.)
BIIGLE2Go - A scalable image annotation system for easy deployment on cruises.
In: Proceedings of IEEE OCEANS 2019. . -
2019 | Konferenzbeitrag | Im Druck | PUB-ID: 2937705Möller T, Langenkämper D, Nattkemper TW (In Press)PUB
Wind turbine segmentation performing kNN-clustering on superpixel segmentations.
In: Image and Signal Processing for Remote Sensing XXV. Bruzzone L, Bovolo F (Eds); Image and Signal Processing for Remote Sensing XXV. Proceedings, 11155. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918218Hattab G, Wiesmann V, Becker A, Munzner T, Nattkemper TW (2018)PUB | PDF | DOI | WoS | PubMed | Europe PMC
A Novel methodology for characterizing cell subpopulations in automated time-lapse microscopy.
Frontiers in Bioengineering and Biotechnology 6: 17. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932066Zurowietz M, Langenkämper D, Hosking B, Ruhl H, Nattkemper TW (2018)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
MAIA - A machine learning assisted image annotation method for environmental monitoring and exploration .
PLoS ONE 13(11): e0207498. -
2018 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2921040Möller T, Nillsen I, Nattkemper TW (2018)PUB | DOI
Tracking Sponge Size and Behaviour with Fixed Underwater Observatories.
In: Pattern Recognition and Information Forensics. ICPR 2018 International Workshops, CVAUI, IWCF, and MIPPSNA, Beijing, China, August 20-24, 2018, Revised Selected Papers. Zhang Z, Suter D, Tian Y, Branzan Albu A, Sidère N, Jair Escalante H (Eds); Lecture Notes in Computer Science, 11188. Cham: Springer: 45-54. -
2018 | Konferenzbeitrag | Angenommen | PUB-ID: 2921039Langenkämper D, van Kevelaer R, Nattkemper TW (Accepted)PUB | PDF
Strategies for Tackling the Class Imbalance Problem in Marine Image Classification.
Presented at the International Conference on Pattern Recognition 2018, Computer Vision for Automated Analysis of Underwater Imagery Workshop, Beijing. -
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909190Langenkämper D, Zurowietz M, Schoening T, Nattkemper TW (2017)PUB | Dateien verfügbar | DOI | WoS
BIIGLE 2.0 - Browsing and Annotating Large Marine Image Collections.
Frontiers in Marine Science 4(March): 83. -
2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2915349Möller T, Nilssen I, Nattkemper TW (2017)PUB
Active learning for the classification of species in underwater images from a fixed observatory.
In: Proceedings of The IEEE International Conference on Computer Vision Workships (ICCVW). Piscataway, NJ: IEEE: 2891-2897. -
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901477Ahmed Raza SE, Langenkämper D, Sirinukunwattana K, Epstein D, Nattkemper TW, Rajpoot NM (2016)PUB | DOI | WoS | PubMed | Europe PMC
Robust normalization protocols for multiplexed fluorescence bioimage analysis.
BioData Mining 9(1): 11. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900943Langenkämper D, Jakobi T, Feld D, Jelonek L, Goesmann A, Nattkemper TW (2016)PUB | DOI | WoS | PubMed | Europe PMC
Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations.
Frontiers in Genetics 7: 5. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903712Osterloff J, Nilssen I, Eide I, de Oliveira Figueiredo MA, de Souza Tâmega FT, Nattkemper TW (2016)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Computational Visual Stress Level Analysis of Calcareous Algae Exposed to Sedimentation.
PLOS ONE 11(6): e0157329. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907705Brink B, Seidel A, Kleinbölting N, Nattkemper TW, Albaum S (2016)PUB | DOI | WoS | PubMed | Europe PMC
Omics Fusion - A Platform for Integrative Analysis of Omics Data.
Journal of Integrative Bioinformatics 13(4: SI): 296. -
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2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2904671Möller T, Nilssen I, Nattkemper TW (2016)PUB | DOI
Change Detection in Marine Observatory Image Streams using Bi-Domain Feature Clustering.
In: 2016 23rd International Conference on Pattern Recognition (ICPR). Piscataway, NJ: IEEE: 793-798. -
2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2906524Möller T, Nilssen I, Nattkemper TW (2016)PUB
Data-driven Long Term Change Analysis in Marine Observatory Image Streams.
In: 2016 ICPR 2nd Workshop on Computer Vision for Analysis of Underwater Imagery (CVAUI 2016) . Proceedings. Piscataway, NJ: IEEE: 13-18. -
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2016 | Konferenzbeitrag | Angenommen | PUB-ID: 2904670Langenkämper D, Nattkemper TW (Accepted)PUB
COATL - A Learning Architecture for Online Real-Time Detection and Classification Assistance for Environmental Data.
In: Proceedings of the International Conference on Pattern Recognition (ICPR). . -
2016 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2903653Durden J, Schoening T, Althaus F, Friedmann A, Garica R, Glover AG, Greinert J, Stout NJ, Jones DOB, Jordt A, Kaeli JW, Koser K, Kuhnz LA, Lindsay D, Morris KJ, Nattkemper TW, Osterloff J, Ruhl H, Singh H, Tran M, Bett BJ (2016)PUB | WoS
Perspectives in Visual Imaging for Marine Biology and Ecology: From Acquisition to Understanding.
In: Oceanography and Marine Biology: An Annual Review. Hughes RN, Hughes DJ, Smith IP, Dale AC (Eds); 54, Boca Raton: CRC Press: 1-72. -
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905905Nuno Gomes-Pereira J, Auger V, Beisiegel K, Benjamin R, Bergmann M, Bowden D, Buhl-Mortensen P, De Leo FC, Dionísio G, Durden JM, Edwards L, Friedman A, Greinert J, Jacobsen-Stout N, Lerner S, Leslie M, Nattkemper TW, Sameoto JA, Schoening T, Schouten R, Seager J, Singh H, Soubigou O, Tojeira I, van den Beld I, Dias F, Tempera F, Santos RS (2016)PUB | DOI | WoS
Current and future trends in marine image annotation software.
Progress in Oceanography 149: 106-129. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722138Kessler N, Bonte A, Albaum S, Mäder P, Messmer M, Goesmann A, Niehaus K, Langenkämper G, Nattkemper TW (2015)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform.
Frontiers in Bioinformatics and Computational Biology 3: 35. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2724431Schoening T, Kuhn T, Bergmann M, Nattkemper TW (2015)PUB | PDF | DOI | WoS
DELPHI - fast and adaptive computational laser point detection and visual footprint quantification for arbitrary underwater image collections.
Frontiers in Marine Science 2: 20. -
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2015 | Datenpublikation | PUB-ID: 2777409Schlueter J-P, McIntosh M, Hattab G, Nattkemper TW, Becker A (2015)PUB | Dateien verfügbar | DOI
Phase Contrast and Fluorescence Bacterial Time-Lapse Microscopy Image Data.
Bielefeld University. -
2015 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2775956Steinbrink B, Schoening T, Brün D, Nattkemper TW (2015)PUB | PDF
Integrated Digital Marine Image Analysis and Management - new solutions to handle large image collections in environmental monitoring and exploration.
Presented at the GEOHAB, Salvador, Brazil. -
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2015 | Konferenzbeitrag | Im Druck | PUB-ID: 2775947Schoening T, Langenkämper D, Steinbrink B, Brün D, Nattkemper TW (In Press)PUB
Rapid image processing and classification in underwater exploration using advanced high performance computing.
In: Proc. of the IEEE Oceans. Washington DC, USA: IEEE. -
2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2655889Osterloff J, Schoening T, Bergmann M, Nattkemper TW (2014)PUB
An overview and rating of benthic image pre-processings for color constancy.
Presented at the Marine Imaging Workshop, National Oceanography Centre, Southampton, UK. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2705712Langenkämper D, Goesmann A, Nattkemper TW (2014)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
AKE - The Accelerated k-mer Exploration Web-Tool for Rapid Taxonomic Classification and Visualization.
BMC Bioinformatics 15(1): 384. -
2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2656048Möller T, Nilssen I, Nattkemper TW (2014)PUB | PDF
Introduction of image-based water transparency descriptors to quantify marine snow and turbidity features. A study with data from a stationary observatory.
Presented at the MIW 2014 - Marine Imaging Workshop, Southampton. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706029Kessler N, Walter F, Persicke M, Albaum S, Kalinowski J, Goesmann A, Niehaus K, Nattkemper TW (2014)PUB | PDF | DOI | WoS | PubMed | Europe PMC
ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis.
PLoS ONE 9(11): e113909. -
2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2683648Osterloff J, Schoening T, Bergmann M, Durden JM, Ruhl HA, Nattkemper TW (2014)PUB | DOI | Download (ext.)
Ranking Color Correction Algorithms using Cluster Indices.
Presented at the ICPR Workshop on Computer Vision for Analysis of Underwater Imagery, Stockhom. -
2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2690300Kölling J, Zurowietz M, Nattkemper TW (2014)PUB | Download (ext.)
Interactive Exploration of Spatial Distribution in Mass Spectrometry Imaging.
Presented at the 4th Symposium on Biological Data Visualization (BioVis), Boston, MA, USA. -
2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2676320Osterloff J, Nilssen I, de Oliveira Figueiredo MA, de Souza Tâmega FT, Möller T, Nattkemper TW (2014)PUB | PDF
Automated Image based Biomass Quantification in Mesocosm Studies.
Presented at the Geohab 2014, Lorne, Victoria, Australia. -
2014 | Konferenzbeitrag | Im Druck | PUB-ID: 2690335Rathke M, Kölling J, Gorzolka K, Niehaus K, Nattkemper TW (In Press)PUB
Interactive and dynamic web-based visual exploration of high dimensional bioimages with real time clustering.
Presented at the German Conference on Bioinformatics (GCB), Bielefeld, Germany. -
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2690322Kölling J, Zurowietz M, Nattkemper TW (2014)PUB | Download (ext.)
Interactive Exploration of Spatial Distribution in Mass Spectrometry Imaging.
Presented at the 22nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, MA, USA. -
2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2676334Möller T, Nilssen I, Sumida PYG, Elbers KL, Nattkemper TW (2014)PUB
Novelty detection in time lapse image data.
Presented at the Geohab 2014, Lorne, Victoria, Australia. -
2014 | Konferenzband | Veröffentlicht | PUB-ID: 2901695Giegerich R, Hofestädt R, Nattkemper TW (Eds) (2014)PUB
German Conference on Bioinformatics 2014.
GI-Edition: lecture notes in informatics 235. -
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2775961Schoening T, Brün D, Kuhn T, Nattkemper TW (2014)PUB
Image-based marine resource exploration and biodiversity assessment with MAMAS (Marine data Asset Management and Analysis System).
Presented at the UMI (Underwater Mining Institute), Lisbon, Portugal. -
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2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2610134Schoening T, Steinbrink B, Brün D, Kuhn T, Nattkemper TW (In Press)PUB
Ultra-fast segmentation and quantification of poly-metallic nodule coverage in high-resolution digital images.
In: Proceedings of the UMI 2013. . -
2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2537912Rubiano Castellanos CC, Merkle T, Nattkemper TW (In Press)PUB
Using random forest to find Nuclear Export Signals (NESs) in proteins of Arabidopsis thaliana.
Presented at the BIOINFORMATICS Conf., Barcelona, Spain. -
2013 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2656054Schoening T, Bergmann M, Nattkemper TW (2013)PUB
A machine-learning system for the automated detection of megafauna and its applicability unseen footage.
Presented at the GEOHAB, Rome. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2625914Bergmann T, Maeder U, Fiebich M, Dickob M, Nattkemper TW, Anselmetti D (2013)PUB | DOI | WoS | PubMed | Europe PMC
Categorization of two-photon microscopy images of human cartilage into states of osteoarthritis.
Osteoarthritis And Cartilage 21(8): 1074-1082. -
2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2610762Nattkemper TW (2013)PUB
Cluster Analysis.
In: Encyclopedia of Systems Biology. Dubitzky W, Wolkenhauer O, Cho K-H, Yokota H (Eds); New York, NY : Springer. -
2013 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2656093Kuhn T, Rühlemann C, Wiedicke-Hombach M, Schoening T, Nattkemper TW (2013)PUB
Application of Hydro-Acoustic and Video Data for the Exploration of Manganese Nodule Fields.
Presented at the ISOPE OMS, Szczecin, Poland. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610129Kessler N, Bonte A, Langenkämper G, Niehaus K, Goesmann A, Nattkemper TW (2013)PUB | DOI | WoS | PubMed | Europe PMC
MeltDB 2.0 - Advances of the metabolomics software system.
Bioinformatics 29(19): 2452-2459. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2542584Held C, Nattkemper TW, Palmisano R, Wittenberg T (2013)PUB | DOI | PubMed | Europe PMC
Approaches to automatic parameter fitting in a microscopy image segmentation pipeline: An exploratory parameter space analysis.
Journal of Pathology Informatics 4(2): 5. -
2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2538625Bonte A, Kessler N, Nattkemper TW, Goesmann A, Cecile T, Mäder P, Niehaus K, Langenkämper G (In Press)PUB
Einsatz von Protein- und Metabolit-Profiling-Methoden zur Unterscheidung von ökologischem und konventionellem Weizen.
Presented at the 12. Wissenschaftstagung Ökologischer Landbau „Ideal und Wirklichkeit – Perspektiven Ökologischer Landbewirtschaftung“, Bonn, Germany. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2494458Schoening T, Bergmann M, Purser A, Dannheim J, Gutt J, Nattkemper TW (2012)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Semi-automated image analysis for the assessment of megafaunal densities at the Arctic deep-sea observatory HAUSGARTEN.
PLoS ONE 7(6): e38179. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2455753Raza S-E-A, Epstein D, Nattkemper TW, Rajpoot N (2012)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
RAMTaB: Robust Alignment of Multi-Tag Bioimages.
PLoS ONE 7(2): e30894. -
2012 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2656105Figueiredo Creed M, Coutinho R, Reynier MV, Cesar Paiva P, Villas AB, Bôas AB, Tapajó s de Souza Tâmega F, Nattkemper TW, Eide I (2012)PUB
Effects of drill cuttings on a deep water rhodolith bed: an integrated approach.
Presented at the V International Rhodolith Workshop, Granada, Spain. -
2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2656050Schoening T, Kuhn T, Nattkemper TW (2012)PUB
Estimation of poly-metallic nodule coverage in benthic images.
In: Proc. of the 41st Conference of the Underwater Mining Institute (UMI). . -
2012 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2656067Schoening T, Bergmann M, Purser A, Gutt J, Dannheim J, Taylor J, Nattkemper TW, Boetius A (2012)PUB
The impact of experts’ inter- and intra-observer agreements on computational object classification in images from the deep seafloor of the HAUSGARTEN observatory.
Presented at the 13th International Deep-Sea Biology Symposium, Wellington, New Zealand. -
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232Trötschel C, Albaum S, Wolff D, Schröder S, Goesmann A, Nattkemper TW, Poetsch A (2012)PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation.
Molecular & Cellular Proteomics 11(8): 512-526. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2536156Zhou L, Pelengaris S, Abouna S, Young J, Epstein D, Herold J, Nattkemper TW, Nakhai H, Khan M (2012)PUB | DOI | WoS | PubMed | Europe PMC
Re-Expression of IGF-II Is Important for Beta Cell Regeneration in Adult Mice.
PLoS ONE 7(9): e43623. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2481783Kölling J, Langenkämper D, Sylvie A, Michale K, Nattkemper TW (2012)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
WHIDE - A web tool for visual data mining colocation patterns in multivariate bioimages.
Bioinformatics 28(8): 1143-1150. -
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2012 | Konferenzbeitrag | PUB-ID: 2515700Schoening T, Bergmann M, Boetius A, Nattkemper TW (2012)PUB
Investigation of hidden parameters influencing the automated object detection in benthic images.
Presented at the IEEE OCEANS 2012 MTS/IEEE, Hampton Roads, Virginia, USA. -
2012 | Konferenzbeitrag | PUB-ID: 2515671Held C, Nattkemper TW, Wittenberg T (2012)PUB
Approaches to automatic parameter fitting in a microscopy image segmentation pipeline: An exploratory parameter space analysis.
Presented at the Histopathology Image Analysis (HIMA) workshop at MICCAI 2012, Nizza. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300114Loyek C, Bunkowski A, Vautz W, Nattkemper TW (2011)PUB | DOI | PubMed | Europe PMC
Web2.0 paves new ways for collaborative and exploratory analysis of Chemical Compounds in Spectrometry Data.
Journal of Integrative Bioinformatics 8(2): 158. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063Albaum S, Hahne H, Otto A, Haußmann U, Becher D, Poetsch A, Goesmann A, Nattkemper TW (2011)PUB | PDF | DOI | WoS | PubMed | Europe PMC
A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study.
Proteome Science 9(1): 30. -
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300232Loyek C, Kölling J, Langenkämper D, Niehaus K, Nattkemper TW (2011)PUB | PDF | DOI
A Web2.0 Strategy for the Collaborative Analysis of Complex Bioimages.
In: Advances in Intelligent Data Analysis X: 10th International Symposium, IDA 2011, Porto, Portugal, October 29-31, 2011. Proceedings. Gama J, Bradley E, Hollmén J (Eds); Lecture Notes in Computer Science, 7014. Berlin, Heidelberg: Springer: 258-269. -
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300237Langenkämper D, Kölling J, Khan M, Rajpoot N, Nattkemper TW (2011)PUB | PDF
Towards Protein Network Analysis using TIS Imaging and Exploratory Data Analysis.
Presented at the Workshop on Computational Systems Biology (WCSB), Zürich, Switzerland. -
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2656082Purser A, Ontrup J, Schoening T, Thomsen L, Unnithan V, Nattkemper TW (2011)PUB
How to squeeze even more from your Terabytes of video data!. -
2011 | Konferenzbeitrag | Im Druck | PUB-ID: 2315356Bergmann T, Fiebich TM, Nattkemper TW, Anselmetti D (In Press)PUB
Categorization of 2-photon microscopy images of human articular cartilage into states of arthritis.
Presented at the Tagung der Biomedizinischen Technik (BMT), Freiburg, Germany. -
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300102Arif M, Rajpoot N, Technow U, Chakraborty T, Fisch N, Jensen NA, Niehaus K, Nattkemper TW (2011)PUB | DOI | PubMed | Europe PMC
Quantification of Cell Infection Caused by Listeria monocytogenes Invasion.
Journal of Biotechnology 154(1): 76-83. -
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2323705Langenkämper D, Kölling J, Abouna S, Khan M, Niehaus K, Nattkemper TW (2011)PUB | PDF | Download (ext.)
TICAL - a web-tool for multivariate image clustering and data topology preserving visualization.
Presented at the Microscopic Image Analysis with Applications in Biology (MIAAB), Heidelberg, Germany. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093532Scherbart A, Nattkemper TW (2011)PUB | DOI | WoS | PubMed | Europe PMC
Looking inside self-organizing map ensembles with resampling and negative correlation learning.
Neural Networks 24(1): 130-141. -
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2300235Schoening T, Hans V, Nattkemper TW (2011)PUB | DOI
Towards improved epilepsia diagnosis by unsupervised segmentation of neuropathology tissue sections using Ripley’s-L features.
In: Bildverarbeitung für die Medizin 2011:Algorithmen - Systeme - Anwendungen Proceedings des Workshops vom 20. - 22. März 2011 in Lübeck. Informatik aktuell, Berlin, Heidelberg: Springer: 44-48. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929340Burgemeister S, Nattkemper TW, Noll T, Hoffrogge R, Flaschel E (2010)PUB | DOI | WoS | PubMed | Europe PMC
CellViCAM-Cell viability classification for animal cell cultures using dark field micrographs.
JOURNAL OF BIOTECHNOLOGY 149(4): 310-316. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794419Herold J, Zhou L, Abouna S, Pelengaris S, Epstein D, Khan M, Nattkemper TW (2010)PUB | DOI | WoS | PubMed | Europe PMC
Integrating semantic annotation and information visualization for the analysis of multichannel fluorescence micrographs from pancreatic tissue.
Computerized Medical Imaging and Graphics 34(6): 446-452. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929311Gölzhäuser A, Nattkemper TW, Niehaus K, Pühler A, Sauer M (2010)PUB | DOI | WoS | PubMed | Europe PMC
BioImaging: Contributions from biology, physics and informatics.
Journal of Biotechnology 149(4): 227-228. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929335Herold J, Schubert W, Nattkemper TW (2010)PUB | DOI | WoS | PubMed | Europe PMC
Automated detection and quantification of fluorescently labeled synapses in murine brain tissue sections for high throughput applications.
JOURNAL OF BIOTECHNOLOGY 149(4): 299-309. -
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018427Qureshi H, Rajpoot N, Nattkemper TW, Hans V (2009)PUB
A Robust Adaptive Wavelet-based Method for Classification of Meningioma Histology Images.
In: MICCAI«2009 Workshop on Optical Tissue Image Analysis in Microscopy, Histology, and Endoscopy. . -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314Diaz NN, Krause L, Goesmann A, Niehaus K, Nattkemper TW (2009)PUB | PDF | DOI | WoS | PubMed | Europe PMC
TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach.
BMC Bioinformatics 10(1): 56. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531Albaum S, Neuweger H, Fraenzel B, Lange S, Mertens D, Troetschel C, Wolters D, Kalinowski J, Nattkemper TW, Goesmann A (2009)PUB | DOI | WoS | PubMed | Europe PMC
Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments.
Bioinformatics 25(23): 3128-3134. -
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1591448Saalbach A, Lange O, Nattkemper TW, Meyer-Baese A (2009)PUB | DOI | WoS | PubMed | Europe PMC
On the application of (topographic) independent and tree-dependent component analysis for the examination of DCE-MRI data.
In: Biomedical Signal Processing and Control. BIOMEDICAL SIGNAL PROCESSING AND CONTROL, 4. ELSEVIER SCI LTD: 247-253. -
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636280Timm W, Scherbart A, Boecker S, Kohlbacher O, Nattkemper TW (2008)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics.
BMC Bioinformatics 9(1): 443. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585611Wei N, Flaschel E, Friehs K, Nattkemper TW (2008)PUB | PDF | DOI | WoS | PubMed | Europe PMC
A machine vision system for automated non-invasive assessment of cell viability via dark field microscopy, wavelet feature selection and classification.
BMC Bioinformatics 9(1): 449. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587052Martin C, Diaz NN, Ontrup J, Nattkemper TW (2008)PUB | DOI | WoS | PubMed | Europe PMC
Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification.
Bioinformatics 24(14): 1568-1574. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588286Twellmann T, Meyer-Baese A, Lange O, Foo S, Nattkemper TW (2008)PUB | DOI | WoS | PubMed | Europe PMC
Model-free visualization of suspicious lesions in breast MRI based on supervised and unsupervised learning.
ENGINEERING APPLICATIONS OF ARTIFICIAL INTELLIGENCE 21(2): 129-140. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364Krause L, Diaz NN, Goesmann A, Kelley S, Nattkemper TW, Rohwer F, Edwards RA, Stoye J (2008)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Phylogenetic classification of short environmental DNA fragments.
Nucleic Acids Research 36(7): 2230-2239. -
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018409Martin C, Nattkemper TW (2008)PUB | DOI
A Tree Index to Support Clustering Based Exploratory Data Analysis.
In: Bioinformatics Research and Development : Second International Conference, BIRD 2008 Vienna, Austria, July 7-9, 2008 Proceedings. Communications in Computer and Information Science, 13. Berlin, Heidelberg: Springer: 1-15. -
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381Albaum S, Neuweger H, Lange S, Mertens D, Runte K, Kalinowski J, Nattkemper TW, Goesmann A (2008)PUB
ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract).
In: HUPO 7th Annual World Congress. . -
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018398Herold J, Friedenberger M, Bode M, Rajpoot N, Schubert W, Nattkemper TW (2008)PUB | DOI
Flexible Synapse Detection in Fluorescence Micrographs by Modeling Human Expert Grading.
In: Proc. of 2008 IEEE International Symposium on Biomedical Imaging. . -
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1630738Pobigaylo N, Szymczak S, Nattkemper TW, Becker A (2008)PUB | DOI | WoS | PubMed | Europe PMC
Identification of genes relevant to symbiosis and competitiveness in Sinorhizobium meliloti using signature-tagged mutants.
MOLECULAR PLANT-MICROBE INTERACTIONS 21(2): 219-231. -
2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018412Martin C, Díaz Solórzano NN, Ontrup J, Nattkemper TW (2007)PUB | PDF | DOI
Genome feature exploration using hyperbolic Self-Organizing Maps.
In: Proceedings of the 6th International Workshop on Self-Organizing Maps (WSOM 2007). Bielefeld: Bielefeld University. -
2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714045Scherbart A, Timm W, Böcker S, Nattkemper TW (2007)PUB | PDF | DOI
SOM-based Peptide Prototyping for Mass Spectrometry Peak Intensity Prediction.
In: Proceedings of the 6th Workshop on Self-Organizing Maps (WSOM 07). Bielefeld: Bielefeld University. -
2007 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2714002Lessmann B, Wang Y, Bergmann M, Kämpfe T, Nattkemper TW (2007)PUB
Use of automated image analysis to detect changes in megafaunal densities at HAUSGARTEN (79°N west off Svalbard) between 2002 and 2004.
Presented at the EMBS - 42nd European Marine Biology Symposium, Kiel, Germany. -
2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2714021Nattkemper TW, Degenhard A, Twellmann T (2007)PUB
Breast Tumor Classification and Visualization with Machine-Learning Approaches.
In: Cancer Imaging - Lung and breast carcinomas. Hayat MA (Ed);1. Amsterdam : Academic Press: 309-321. -
2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2714040Scherbart A, Timm W, Boecker S, Nattkemper TW (2007)PUB | DOI
Neural Network Approach for Mass Spectrometry Prediction by Peptide Prototyping.
In: Artificial Neural Networks – ICANN 2007 - 17th International Conference, Porto, Portugal, September 9-13, 2007, Proceedings, Part II. Sá de JM (Ed); Lecture Notes in Computer Science, 4669. Berlin: Springer: 90-99. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2714032Lessmann B, Nattkemper TW, Kessar P, Pointon L, Khazen M, Leach MO, Degenhard A (2007)PUB | DOI | WoS | PubMed | Europe PMC
Multiscale Analysis of MR Mammography Data.
Zeitschrift für Medizinische Physik (german journal of medical physics) 17(3): 166-171. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595739Wei N, You J, Friehs K, Flaschel E, Nattkemper TW (2007)PUB | DOI | WoS | PubMed | Europe PMC
In situ dark field microscopy for on-line monitoring of yeast cultures.
BIOTECHNOLOGY LETTERS 29(3): 373-378. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593120Wei N, You J, Friehs K, Flaschel E, Nattkemper TW (2007)PUB | DOI | WoS | PubMed | Europe PMC
An in situ probe for on-line monitoring of cell density and viability on the basis of dark field microscopy in conjunction with image processing and supervised machine learning.
Biotechnology and Bioengineering 97(6): 1489-1500. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1630749Lessmann B, Nattkemper TW, Hans VH, Degenhard A (2007)PUB | DOI | WoS | PubMed | Europe PMC
A method for linking computed image features to histological semantics in neuropathology.
Journal of Biomedical Informatics 40(6): 631-641. -
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2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2018416Nattkemper TW, Degenhard A, Twellmann T (2007)PUB
Breas.
In: Cancer Imaging - Lung and breast carcinomas. Hayat MA (Ed);1. Academic Press: 309-324. -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2714075Deters grosse H, Timm W, Nattkemper TW (2006)PUB | Download (ext.)
REEFSOM - A Metaphoric Data Display for Exploratory Data Mining : journal of new media in neural and cognitive science and education.
Brains, Minds and Media 2(bmm305). -
2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374232Varini C, Lessmann B, Degenhard A, Hans VH, Nattkemper TW (2006)PUB | Download (ext.)
Visual Exploration of Pathology Images by a Discrete Wavelet Transform Preprocessed Locally Linear Embedding.
In: Bildverarbeitung für die Medizin. Handels H, Ehrhardt J, Horsch A, Meinzer H-P, Tolxdorff T, Gesellschaft für Informatik (Eds); Informatik aktuell, Berlin : Springer: 66-70. -
2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714148Twellmann T, Lange O, Nattkemper TW, Meyer A (2006)PUB | DOI
Visualizations of Suspicious Lesions in Breast MRI Based on Intelligent Neural Systems.
In: Intelligent Computing: Theory and Applications IV. Proceedings of SPIE, 6229. San Diego, CA: SPIE. -
2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374254Lessmann B, Nattkemper TW, Huth J, Loyek C, Kessar P, Khazen M, Pointon L, Leach MO, Degenhard A (2006)PUB
Content Based Image Retrieval for Dynamic Time Series Data.
In: Proceedings of BVM. 61-65. -
2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374494Timm W, Böcker S, Twellmann T, Nattkemper TW (2006)PUB | DOI
Peak intensity prediction for pmf mass spectra using support vector regression.
In: Proc. of the 7th International FLINS Conference on Applied Artificial Intelligence. WORLD SCIENTIFIC: 565-572. -
2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714060Lessmann B, Hans V, Degenhard A, Nattkemper TW (2006)PUB | DOI
Feature space exploration of pathology images using Content-Based Database Visualization.
In: Medical Imaging 2006: Image Processing. Proceedings of SPIE, 6144. San Diego, CA: SPIE. -
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600329Miksch G, Bettenworth F, Friehs K, Flaschel E, Saalbach A, Nattkemper TW (2006)PUB | DOI | WoS | PubMed | Europe PMC
A rapid reporter system using GFP as a reporter protein for identification and screening of synthetic stationary-phase promoters in Escherichia coli.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 70(2): 229-236. -
2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1597259Martin C, Deters H grosse, Nattkemper TW (2006)PUB | DOI | WoS
Fusing biomedical multi-modal data for exploratory data analysis.
In: ARTIFICIAL NEURAL NETWORKS - ICANN 2006, PT 2. Kollias S (Ed);4132. Berlin, Heidelberg: SPRINGER-VERLAG BERLIN: 798-807. -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598838Pobigaylo N, Wetter D, Szymczak S, Schiller U, Kurtz S, Meyer F, Nattkemper TW, Becker A (2006)PUB | DOI | WoS | PubMed | Europe PMC
Construction of a large signature-tagged mini-Tn5 transposon library and its application to mutagenesis of Sinorhizobium meliloti.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 72(6): 4329-4337. -
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603560Nattkemper TW, Arnrich B, Lichte O, Timm W, Degenhard A, Pointon L, Hayes C, Leach MO (2005)PUB | DOI | WoS | PubMed | Europe PMC
Evaluation of radiological features for breast tumour classification in clinical screening with machine learning methods.
ARTIFICIAL INTELLIGENCE IN MEDICINE 34(2): 129-139. -
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714153Lessmann B, Nattkemper TW, Degenhard A, Pointon L, Kessar P, Khazen M, Leach MO (2005)PUB
Clustering approach for wavelet transformed MR image data.
In: Proceedings of the 14th International Conference of Medical Physics. 1412. -
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714331Saalbach A, Twellmann T, Nattkemper TW (2005)PUB
Spectral Clustering for Data Categorization based on Self-Organizing Maps.
In: Applications of Neural Networks and Machine Learning in Image Processing IX. Nasser M. N (Ed);5673. San Jose, CA: 12-18. -
2005 | Monographie | PUB-ID: 2714309Bettenworth F, Miksch G, Fries K, Flaschel E, Saalbach A, Eickmeyer J, Nattkemper TW (2005)PUB
An Online Monitoring System for the Screening of Stationary-Phase Promoters in E. Coli using GFP as a Reporter Protein. -
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374666Twellmann T, Lichte O, Saalbach A, Wismüller A, Nattkemper TW (2005)PUB
An Adaptive Colour Scale for Comparison of Pseudo Colouring Techniques for DCE-MRI Data.
Presented at the Workshop für Bildverarbeiteung für die Medzin. -
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374546Saalbach A, Twellmann T, Nattkemper TW, Wismüller A, Ontrup J, Ritter H (2005)PUB
A hyperbolic topographic mapping for proximity data.
In: Proc. of the IASTED International Conference of Artificial Intelligence and Applications. 2005. 106-111. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2714263Twellmann T, Lichte O, Nattkemper TW (2005)PUB | DOI | WoS | PubMed | Europe PMC
An Adaptive Tissue Characterisation Network for Model-Free Visualisation of Dynamic Contrast-Enhanced Magnetic Resonance Image Data.
IEEE Transactions on Medical Imaging 24(10): 1256-1266. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2714340Nattkemper TW, Wismüller A (2005)PUB | DOI | WoS | PubMed | Europe PMC
Tumour feature analysis with unsupervised machine learning.
Medical Image Analysis 9(4): 344-351. -
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603030Nattkemper TW, Wismuller A (2005)PUB | DOI | WoS | PubMed | Europe PMC
Tumor feature visualization with unsupervised learning.
MEDICAL IMAGE ANALYSIS 9(4): 344-351. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946602Wei N, Flaschel E, Saalbach A, Twellmann T, Nattkemper TW (2005)PUB | DOI | PubMed | Europe PMC
Reagent-free automatic cell viability determination using neural networks based machine vision and dark-field microscopy in Saccharomyces cerevisiae.
Conf Proc IEEE Eng Med Biol Soc 6: 6305-6308. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602344Prank K, Schulze E, Eckert O, Nattkemper TW, Bettendorf M, Maser-Gluth C, Sejnowski TJ, Grote A, Penner E, von zur Muhlen A, Brabant G (2005)PUB | DOI | WoS | PubMed | Europe PMC
Machine learning approaches for phenotype-genotype mapping: predicting heterozygous mutations in the CYP21B gene from steroid profiles.
EUROPEAN JOURNAL OF ENDOCRINOLOGY 153(2): 301-305. -
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601519Varini C, Degenhard A, Nattkemper TW (2005)PUB | DOI | WoS
ISOLLE: Locally linear embedding with geodesic distance.
In: KNOWLEDGE DISCOVERY IN DATABASES: PKDD 2005. Jorge A (Ed); Lecture notes in computer science ; 3721 : Lecture notes in artificial intelligence, 3721. Berlin, Heidelberg: SPRINGER-VERLAG BERLIN: 331-342. -
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601848Miksch G, Bettenworth F, Friehs K, Flaschel E, Saalbach A, Twellmann T, Nattkemper TW (2005)PUB | DOI | WoS | PubMed | Europe PMC
Libraries of synthetic stationary-phase and stress promoters as a tool for fine-tuning of expression of recombinant proteins in Escherichia coli.
In: Journal of Biotechnology. JOURNAL OF BIOTECHNOLOGY, 120. ELSEVIER SCIENCE BV: 25-37. -
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601906Lessmann B, Degenhard A, Kessar P, Pointon L, Khazen M, Leach MO, Nattkemper TW (2005)PUB | DOI | WoS
SOM-based wavelet filtering for the exploration of medical images.
In: ARTIFICIAL NEURAL NETWORKS: BIOLOGICAL INSPIRATIONS - ICANN 2005, PT 1, PROCEEDINGS. Duch W (Ed); Lecture notes in computer science, 3696. Berlin, Heidelberg: SPRINGER-VERLAG BERLIN: 671-676. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602177Twellmann T, Lichte O, Nattkemper TW (2005)PUB | DOI | WoS | PubMed | Europe PMC
An adaptive tissue characterization network for model-free visualization of dynamic contrast-enhanced magnetic resonance image data.
IEEE TRANSACTIONS ON MEDICAL IMAGING 24(10): 1256-1266. -
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946892Nattkemper TW (2004)PUB | PubMed | Europe PMC
Automatic segmentation of digital micrographs: a survey.
Stud Health Technol Inform 107(Pt 2): 847-851. -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946838Twellmann T, Saalbach A, Müller C, Nattkemper TW, Wismuller A (2004)PUB | PubMed | Europe PMC
Detection of suspicious lesions in dynamic contrast enhanced MRI data.
The 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society 1: 454-457. -
2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714397Kämpfe T, Nattkemper TW, Ritter H (2004)PUB
AQUISAR: Image Retrieval in Underwater Webcam Images.
In: WIAMIS 2004 : 5th International Workshop on Image Analysis for Multimedia Interactive Services. Lisboa, Portugal. -
2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714346Lessmann B, Twellmann T, Degenhard A, Nattkemper TW, Leach MO (2004)PUB
Wavelet features for improved tumour detection in DCE-MRI.
In: Proceedings of Medical Image Understanding and Analysis (MIUA). Rueckert D, Hajnal J, Yang G-Z (Eds); London, UK: BMVA: 93-96. -
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2714465Nattkemper TW (2004)PUB
Multivariate image analysis in biomedicine: a methodological review.
Journal of Biomedical Informatics 37(5): 380-391. -
2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714382Saalbach A, Twellmann T, Nattkemper TW, White MJ, Khazen M, Leach MO (2004)PUB | DOI
Visualization of Multivariate Image Data using Image Fusion and Perceptually Optimized Color Scales based on sRGB.
In: Medical Imaging 2004: Visualization, Image-Guided Procedures, and Display. Robert L. Galloway J (Ed); Proceedings of SPIE, 5367. San Diego, CA: SPIE. -
2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2375262Varini C, Nattkemper TW, Degenhard A, Wismüller A (2004)PUB
Visualisation of Breast Tumour DCE-MRI Data using LLE.
In: Proc. Medical Image Understanding and Analysis (MIUA). BMVA: 97-100. -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606041Nattkemper TW (2004)PUB | DOI | WoS | PubMed | Europe PMC
Multivariate image analysis in biomedicine.
JOURNAL OF BIOMEDICAL INFORMATICS 37(5): 380-391. -
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2003 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2017545Nattkemper TW, Hermann T, Schubert W, Ritter H (2003)PUB | PDF
Look & Listen: Sonification and Visualization of Multiparameter Micrographs.
In: Engineering in Medicine and Biology Society. Proceedings of the 25th Annual International Conference of the IEEE. 2. Cancun, Mexico: IEEE: 1311-1314. -
2003 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714487Twellmann T, Saalbach A, Nattkemper TW, Ritter H (2003)PUB
Artificial Neural Networks Machine Learning Approaches for Multivariate Image Analysis.
In: Proceedings Linking mathematical and biological models in cancer research. Magdeburg. -
2003 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714496Ontrup J, Nattkemper TW, Gerstung O, Ritter H (2003)PUB
A MeSH Term based Distance Measure for Document Retrieval and Labeling Assistance.
In: Proc. of EMBC2003. Cancun, Mexico: IEEE EMBS. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612741Nattkemper TW, Twellmann T, Ritter H, Schubert W (2003)PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Human vs. machine: evaluation of fluorescence micrographs.
Computers in Biology and Medicine 33(1): 31-43. -
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1886441Schubert W, Friedenberger M, Haars R, Bode M, Philipsen L, Nattkemper TW, Ritter H (2002)PUB | DOI
Automatic recognition of muscle invasive T-lymphocytes expressing dipeptidyl-peptidase IV (CD26) and analysis of the associated cell surface phenotypes.
Journal of Theoretical Medicine 4(1): 67-74. -
2001 | Datenpublikation | PUB-ID: 2763993Hermann T, Nattkemper TW (2001)PUB | Dateien verfügbar | DOI
Multi-Channel Image Data Analysis using Sonification.
Bielefeld University. -
2001 | Bielefelder E-Dissertation | PUB-ID: 2304068Nattkemper TW (2001)PUB | Dateien verfügbar
A neural network-based system for high throughput fluorescence micrograph evaluation.
Bielefeld (Germany): Bielefeld University. -
2001 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2375220Twellmann T, Nattkemper TW, Schubert W, Ritter H (2001)PUB
Cell Detection in Micrographs of Tissue Sections Using Support Vector Machines.
In: Proc. of. ICANN 2001 Workshop on Kernel and Subspace Methods for Computer Vision. . -
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1617028Nattkemper TW, Ritter H, Schubert W (2001)PUB | DOI | WoS | PubMed | Europe PMC
A neural classifier enabling high-throughput topological analysis of lymphocytes in tissue sections.
IEEE TRANSACTIONS ON INFORMATION TECHNOLOGY IN BIOMEDICINE 5(2): 138-149. -
2001 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1886493Kämpfe T, Nattkemper TW, Ritter H (2001)PUB
Combining Independent Component Analysis and Self-organizing Maps for Cell Image Classification.
In: Pattern Recognition. Radig B, Florczyk S (Eds); LNCS, 2191. Berlin: Springer: 262-268. -
2000 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2017374Hermann T, Nattkemper TW, Schubert W, Ritter H (2000)PUB | PDF
Sonification of Multi-Channel Image Data.
In: Proc. of the Mathematical and Engineering Techniques in Medical and Biological Sciences. Falavar V (Ed); Las Vegas: CSREA Press: 745-750. -
2000 | Datenpublikation | PUB-ID: 2701103Hermann T, Nattkemper TW, Ritter H (2000)PUB | Dateien verfügbar | DOI
Supplementary Material for "Sonification of Multi-Channel Image Data".
Bielefeld University. -
2000 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2375211Nattkemper TW, Wersing H, Schubert W, Ritter H (2000)PUB
A Neural Network Architecture for Automatic Segmentation of Fluorescence Micrographs.
In: Proc. of the 8th Europ. Symp. on Art. Neur. Netw. (ESANN). Verleysen M (Ed);. -
2000 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374799Nattkemper TW, Wersing H, Schubert W, Ritter H (2000)PUB
Fluorescence Micrograph Segmentation by Gestalt-Based Feature Binding.
In: Proc. of the Int. Joint Conf. on Neur. Netw. (IJCNN). 1. Como, Italy: 248-254. -
2000 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2714744Nattkemper TW, Wersing H, Schubert W, Ritter H (2000)PUB
Automatic Evaluation of Multi-Parameter Fluorescence Micrographs with a Neural Network Architecture.
In: Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS '00. 2. Las Vegas, USA: 739-744. -
1999 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374786Nattkemper TW, Ritter H, Schubert W (1999)PUB
Extracting Patterns of Lymphocyte Fluorescence from Digital Microscope Images.
In: Intelligent Data Analysis in Medicine and Pharmacology (IDAMAP 99), Workshop Notes. AMIA 1999, Washington DC: 79-88. -
1998 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2714985Heidemann G, Nattkemper TW, Ritter H (1998)PUB
Farbe und Symmetrie für die datengetriebene Generierung prägnanter Fokuspunkte.
In: 4. Workshop Farbbildverarbeitung. Rehrmann V (Ed); Koblenzer Schriften zur Informatik, 9. Koblenz: Fölbach: 65-71. -
1996 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2715168Heidemann G, Nattkemper TW, Menkhaus G, Ritter H (1996)PUB
Blicksteuerung durch präattentive Fokussierungspunkte.
In: Aktives Sehen in technischen und biologischen Systemen : Beiträge zum Workshop der GI-Fachgruppe 1.0.4 Bildverstehen, 3. und 4. Dezember 1996, Hamburg. Mertsching B (Ed); Proceedings in artificial intelligence, 4. Sankt Augustin: Infix: 109-116.