3023 Publications

2018 | Journal Article | PUB-ID: 2918160
Wendisch VF, Mindt M, Perez F (Accepted)
Biotechnological production of mono- and diamines using bacteria: recent progress, applications and perspectives.
Appl Microbiol Biotechnol.
PUB
 
2018 | Journal Article | PUB-ID: 2917735
Wagner M, Shen L, Albersmeier A, van der Kolk N, Kim S, Cha J, Brasen C, Kalinowski J, Siebers B, Albers S-V (2018)
Sulfolobus acidocaldarius Transports Pentoses via a Carbohydrate Uptake Transporter 2 (CUT2)-Type ABC Transporter and Metabolizes Them through the Aldolase-Independent Weimberg Pathway.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 84(3): 19.
PUB | DOI | WoS
 
2018 | Journal Article | PUB-ID: 2917736
Vu VL, Busche T, Tedin K, Bernhardt J, Wollenhaupt J, Huyen NTT, Weise C, Kalinowski J, Wahl MC, Fulde M, Antelmann H (2018)
Redox-Sensing Under Hypochlorite Stress and Infection Conditions by the Rrf2-Family Repressor HypR in Staphylococcus aureus.
ANTIOXIDANTS & REDOX SIGNALING: 22.
PUB | DOI | WoS
 
2018 | Journal Article | PUB-ID: 2917296
Wittchen M, Busche T, Gaspar AH, Lee JH, Ton-That H, Kalinowski J, Tauch A (2018)
Transcriptome sequencing of the human pathogen Corynebacterium diphtheriae NCTC 13129 provides detailed insights into its transcriptional landscape and into DtxR-mediated transcriptional regulation.
BMC Genomics 19(1): 82.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2018 | Journal Article | PUB-ID: 2914959
da Schoren Costa P, Bolzan de Campos S, Albersmeier A, Dirksen P, Pereira Dresseno AL, Andrade Pais dos Santos OJ, Lima Milani KM, Etto RM, Battistus AG, Peres Rodrigues da Costa AC, Martinez de Oliveira AL, Weigert Galvão C, Guimarães VF, Sczyrba A, Wendisch VF, Passaglia L (2018)
Invasion ecology applied to inoculation of plant growth promoting bacteria through a novel SIMPER-PCA approach.
Plant and Soil 422: 467-478.
PUB | DOI
 
2018 | Journal Article | PUB-ID: 2917037
Verwaaijen B, Wibberg D, Nelkner J, Gordin M, Rupp O, Winkler A, Bremges A, Blom J, Grosch R, Pühler A, Schlüter A (2018)
Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome.
JOURNAL OF BIOTECHNOLOGY 267: 12-18.
PUB | DOI | WoS
 
2018 | Journal Article | PUB-ID: 2917042
Kranz A, Busche T, Vogel A, Usadel B, Kalinowski J, Bott M, Polen T (2018)
RNAseq analysis of alpha-proteobacterium Gluconobacter oxydans 621H.
BMC GENOMICS 19: 17.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Journal Article | PUB-ID: 2914092
Henke NA, Wiebke D, Perez F, Peters-Wendisch P, Wendisch VF (2018)
Coproduction of cell-bound and secreted value-added compounds: simultaneous production of carotenoids and amino acids by Corynebacterium glutamicum.
Bioresorce Technology 247: 744-752.
PUB | DOI | WoS
 
2017 | Journal Article | PUB-ID: 2913367
Baumgart M, Unthan S, Kloss R, Radek A, Polen T, Tenhaef N, Müller MF, Küberl A, Siebert D, Brühl N, Marin K, Hans S, Krämer R, Bott M, Kalinowski J, Wiechert W, Seibold G, Frunzke J, Rückert C, Wendisch VF, Noack S (2017)
Corynebacterium glutamicum chassis C1*: Building and testing a novel platform host for synthetic biology and industrial biotechnology.
ACS Synthetic Biology.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2917180
Saad S, Bhatnagar S, Tegetmeyer H, Geelhoed JS, Strous M, Ruff SE (2017)
Transient exposure to oxygen or nitrate reveals ecophysiology of fermentative and sulfate-reducing benthic microbial populations.
ENVIRONMENTAL MICROBIOLOGY 19(12): 4866-4881.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2916929
Stolze Y, Bremges A, Maus I, Pühler A, Sczyrba A, Schlüter A (2017)
Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants.
Microbial Biotechnology.
PUB | DOI | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2915890
Huang L, Krüger J, Sczyrba A (2017)
Analyzing large scale genomic data on the cloud with Sparkhit.
Bioinformatics: btx808.
PUB | DOI | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2916403
Hossain MS, Persicke M, ElSayed AI, Kalinowski J, Dietz K-J (2017)
Metabolite profiling at the cellular and subcellular level reveals metabolites associated with salinity tolerance in sugar beet.
Journal of Experimental Botany 68(21-22): 5961-5976.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Book Chapter | PUB-ID: 2916878
Mussgnug JH (2017)
Nuclear transformation and toolbox development.
In: Chlamydomonas: Molecular Genetics and Physiology. Hippler M (Ed); Microbiology Monographs, 30. 1st ed. Springer International Publishing: 27-58.
PUB | DOI
 
2017 | Journal Article | PUB-ID: 2914537
Kalinowski J, Ahrens B, Al-Dilaimi A, Winkler A, Wibberg D, Schleenbecker U, Rückert C, Wölfel R, Grass G (2017)
Isolation and whole genome analysis of endospore-forming bacteria from heroin.
Forensic Sci Int Genet 32: 1-6.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2915516
Maus I, Bremges A, Stolze Y, Hahnke S, Cibis KG, Koeck DE, Kim YS, Kreubel J, Hassa J, Wibberg D, Weimann A, Off S, Stantscheff R, Zverlov VV, Schwarz WH, König H, Liebl W, Scherer P, McHardy AC, Sczyrba A, Klocke M, Pühler A, Schlüter A (2017)
Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes.
Biotechnology for Biofuels 10(1): 264.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2909045
Henke NA, Heider S, Hannibal S, Wendisch VF, Peters-Wendisch P (2017)
Isoprenoid pyrophosphate-dependent transcriptional regulation of carotenogenesis in Corynebacterium glutamicum.
Frontiers in Microbiology 8: 633.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2911272
Hillion M, Bernhardt J, Busche T, Rossius M, Maaß S, Becher D, Rawat M, Wirtz M, Hell R, Rückert C, Kalinowski J, Antelmann H (2017)
Monitoring global protein thiol-oxidation and protein S-mycothiolation in Mycobacterium smegmatis under hypochlorite stress.
Sci Rep 7(1): 1195.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2911465
Sommer C, Dietz MS, Patschkowski T, Mathes T, Kottke T (2017)
Light-Induced Conformational Changes in the Plant Cryptochrome Photolyase Homology Region Resolved by Selective Isotope Labeling and Infrared Spectroscopy.
Photochemistry and Photobiology 93(3): 881-887.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2910249
Jaeger D, Hübner W, Huser T, Mussgnug JH, Kruse O (2017)
Nuclear transformation and functional gene expression in the oleaginous microalga Monoraphidium neglectum.
Journal of Biotechnology 249: 10-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2911814
Dörr D, Balaban M, Feijão P, Chauve C (2017)
The gene family-free median of three.
Algorithms for Molecular Biology 12: 14.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2915357
Viefhues M, Sun S, Valikhani D, Nidetzky B, Vrouwe EX, Mayr T, Bolivar JM (2017)
Tailor-made resealable micro(bio)reactors providing easy integration of in situ sensors.
Journal of Micromechanics and Microengineering 27(6): 065012.
PUB | DOI | WoS
 
2017 | Journal Article | PUB-ID: 2910464
Viefhues M, Eichhorn R (2017)
DNA dielectrophoresis: Theory and applications a review.
ELECTROPHORESIS 38(11: SI): 1483-1506.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2912905
Uhmeyer A, Cecchin M, Ballottari M, Wobbe L (2017)
Impaired Mitochondrial Transcription Termination Disrupts the Stromal Redox Poise in Chlamydomonas.
Plant Physiol 174(3): 1399-1419.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2908307
Perez F, Risse JM, Friehs K, Wendisch VF (2017)
Fermentative production of L-pipecolic acid from glucose and alternative carbon sources.
Biotechnology Journal 12(7): 1600646.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2911462
Alkhateeb R, Rückert C, Rupp O, Pucker B, Hublik G, Wibberg D, Niehaus K, Pühler A, Vorhölter F-J (2017)
Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data.
Journal of Biotechnology 253: 55-61.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2913110
Kulis-Horn R, Rückert C, Kalinowski J, Persicke M (2017)
Sequence-based identification of inositol monophosphatase-like histidinol-phosphate phosphatases (HisN) in Corynebacterium glutamicum, Actinobacteria, and beyond.
BMC Microbiology 17(1): 161.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2916406
Lasek R, Dziewit L, Ciok A, Decewicz P, Romaniuk K, Jedrys Z, Wibberg D, Schlüter A, Pühler A, Bartosik D (2017)
Genome content, metabolic pathways and biotechnological potential of the psychrophilic Arctic bacterium Psychrobacter sp DAB_AL43B, a source and a host of novel Psychrobacter-specific vectors.
JOURNAL OF BIOTECHNOLOGY 263: 64-74.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2911273
Koepff J, Keller M, Tsolis CK, Busche T, Rückert C, Hamed MB, Anné J, Kalinowski J, Wiechert W, Economou A, Oldiges M (2017)
Fast and reliable strain characterization of Streptomyces lividans through micro-scale cultivation.
Biotechnol Bioeng 114(9): 2011-2022.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2916435
Czarnecki J, Dziewit L, Puzyna M, Prochwicz E, Tudek A, Wibberg D, Schlüter A, Pühler A, Bartosik D (2017)
Lifestyle-determining extrachromosomal replicon pAMV1 and its contribution to the carbon metabolism of the methylotrophic bacterium Paracoccus aminovorans JCM 7685.
Environmental Microbiology 19(11): 4536-4550.
PUB | DOI | WoS
 
2017 | Journal Article | PUB-ID: 2916444
Schwarzhans JP, Luttermann T, Geier M, Kalinowski J, Friehs K (2017)
Towards systems metabolic engineering in Pichia pastoris.
BIOTECHNOLOGY ADVANCES 35(6): 681-710.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2916447
Schneefeld M, Busche T, Geffers R, Kalinowski J, Bange F-C (2017)
The transcriptional regulator LysG (Rv1985c) of Mycobacterium tuberculosis activates lysE (Rv1986) in a lysine-dependent manner.
PLOS ONE 12(10): e0186505.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2916469
Bednarz H, Niehaus K (2017)
Using transposition to introduce eGFP fusions in Sinorhizobium meliloti: A tool to analyze protein localization patterns in bacteria.
JOURNAL OF BIOTECHNOLOGY 257: 139-149.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2916470
Tomazetto G, Hahnke S, Langer T, Wibberg D, Blom J, Maus I, Pühler A, Klocke M, Schlüter A (2017)
The completely annotated genome and comparative genomics of the Peptoniphilaceae bacterium str. ING2-D1G, a novel acidogenic bacterium isolated from a mesophilic biogas reactor.
JOURNAL OF BIOTECHNOLOGY 257: 178-186.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2916490
Wibberg D, Genzel F, Verwaaijen B, Blom J, Rupp O, Goesmann A, Zrenner R, Grosch R, Pühler A, Schlüter A (2017)
Draft genome sequence of the potato pathogen Rhizoctonia solani AG3-PT isolate Ben3.
ARCHIVES OF MICROBIOLOGY 199(7): 1065-1068.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2916506
Marchant HK, Ahmerkamp S, Lavik G, Tegetmeyer H, Graf J, Klatt JM, Holtappels M, Walpersdorf E, Kuypers MMM (2017)
Denitrifying community in coastal sediments performs aerobic and anaerobic respiration simultaneously.
ISME JOURNAL 11(8): 1799-1812.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2909139
Stracke R, Turgut-Kara N, Weisshaar B (2017)
The AtMYB12 activation domain maps to a short C-terminal region of the transcription factor.
Zeitschrift für Naturforschung C 72(7-8): 251-257.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2916525
Dostalova H, Holatko J, Busche T, Rucka L, Rapoport A, Halada P, Nesvera J, Kalinowski J, Patek M (2017)
Assignment of sigma factors of RNA polymerase to promoters in Corynebacterium glutamicum.
AMB EXPRESS 7: 133.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2916526
Golyshina OV, Tran H, Reva ON, Lemak S, Yakunin AF, Goesmann A, Nechitaylo TY, LaCono V, Smedile F, Slesarev A, Rojo D, Barbas C, Ferrer M, Yakimov MM, Golyshin PN (2017)
Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum Y-T.
SCIENTIFIC REPORTS 7: 3682.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2916527
Rieke S, Heise T, Schmidt F, Haider W, Bednarz H, Niehaus K, Mentz A, Kalinowski J, Hirsch-Ernst KI, Steinberg P, Niemann L, Marx-Stoelting P (2017)
Mixture effects of azole fungicides on the adrenal gland in a broad dose range.
TOXICOLOGY 385: 28-37.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2916528
Wolf T, Schneiker-Bekel S, Neshat A, Ortseifen V, Wibberg D, Zemke T, Pühler A, Kalinowski J (2017)
Genome improvement of the acarbose producer Actinoplanes sp SE50/110 and annotation refinement based on RNA-seq analysis.
JOURNAL OF BIOTECHNOLOGY 251: 112-123.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2916533
Sun Y-Q, Busche T, Rückert C, Paulus C, Rebets Y, Novakova R, Kalinowski J, Luzhetskyy A, Kormanec J, Sekurova ON, Zotchev SB (2017)
Development of a Biosensor Concept to Detect the Production of Cluster-Specific Secondary Metabolites.
ACS SYNTHETIC BIOLOGY 6(6): 1026-1033.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2911396
Müller B, Heinrich C, Jabs W, Kaspar-Schönefeld S, Schmidt A, Wehmeier N, Albaum S, Baessmann C, Noll T, Hoffrogge R (2017)
Label-free protein quantification of sodium butyrate treated CHO cells by ESI-UHR-TOF-MS.
Journal of Biotechnology 257: 87-98.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2914045
Wippermann A, Noll T (2017)
DNA methylation in CHO cells.
Journal of Biotechnology 258(SI): 206-210.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2916543
Harst A, Albaum S, Bojarzyn T, Trötschel C, Poetsch A (2017)
Proteomics of FACS-sorted heterogeneous Corynebacterium glutamicum populations.
Journal of Proteomics 160: 1-7.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2907021
Irla M, Naerdal I, Brautaset T, Wendisch VF (2017)
Methanol-based γ-aminobutyric acid (GABA) production by genetically engineered Bacillus methanolicus strains.
Industrial Crops and Products 106(SI): 12-20.
PUB | DOI | WoS
 
2017 | Journal Article | PUB-ID: 2916547
Hassenrück C, Tegetmeyer H, Ramette A, Fabricius KE (2017)
Minor impacts of reduced pH on bacterial biofilms on settlement tiles along natural pH gradients at two CO2 seeps in Papua New Guinea.
ICES Journal of Marine Science 74(4): 978-987.
PUB | DOI | WoS
 
2017 | Journal Article | PUB-ID: 2915928
Wichmann J, Baier T, Wentnagel E, Lauersen KJ, Kruse O (2017)
Tailored carbon partitioning for phototrophic production of (E)-α-bisabolene from the green microalga Chlamydomonas reinhardtii.
Metabolic Engineering.
PUB | DOI
 
2017 | Journal Article | PUB-ID: 2916552
da Silva PH, Machado R, Dantas S, Dias Vieira Braga M (2017)
Genomic Distance with High Indel Costs.
IEEE/ACM Transactions on Computational Biology and Bioinformatics 14(3): 728-732.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2915524
Pucker B, Holtgräwe D, Weisshaar B (2017)
Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence.
BMC Research Notes 10: 667.
PUB | PDF | DOI | PubMed | Europe PMC
 

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