2965 Publications

2017 | Journal Article | PUB-ID: 2914045
Wippermann A, Noll T (2017)
DNA methylation in CHO cells.
Journal of Biotechnology 258: 206-210.
PUB | DOI
 
2017 | Journal Article | PUB-ID: 2906790
Lee J-H, Wendisch VF (2017)
Biotechnological production of aromatic compounds of the extended shikimate pathway from renewable biomass.
J Biotechnol 257: 211-221.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2910629
Perez F, Ziert C, Risse JM, Wendisch VF (2017)
Improved fermentative production of the compatible solute ectoine by Corynebacterium glutamicum from glucose and alternative carbon sources.
J Biotechnol 258: 59-68.
PUB | DOI | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2913406
Albersmeier A, Pfeifer-Sancar K, Rückert C, Kalinowski J (2017)
Genome-wide determination of transcription start sites reveals new insights into promoter structures in the actinomycete Corynebacterium glutamicum.
Journal of Biotechnology 257: 99-109.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2913403
Jahn L, Schafhauser T, Wibberg D, Rückert C, Winkler A, Kulik A, Weber T, Flor L, van Pée K-H, Kalinowski J, Ludwig-Müller J, Wohlleben W (2017)
Linking secondary metabolites to biosynthesis genes in the fungal endophyte Cyanodermella asteris: The anti-cancer bisanthraquinone skyrin.
Journal of Biotechnology 257: 233-239.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2907317
Freyre-González JA, Tauch A (2017)
Functional architecture and global properties of the Corynebacterium glutamicum regulatory network: Novel insights from a dataset with a high genomic coverage.
Journal of Biotechnology 257: 199-210.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2913963
Ruwe M, Kalinowski J, Persicke M (2017)
Identification and Functional Characterization of Small Alarmone Synthetases in Corynebacterium glutamicum.
Frontiers in Microbiology 8: 1601.
PUB | PDF | DOI
 
2017 | Journal Article | PUB-ID: 2913749
Sant'Anna F, Ambrosini A, Fernandes GD, Bach E, de Souza R, Balsanelli E, Baura V, Fernandes de Brito L, Wendisch VF, Pedrosa FD, Souza EM, Passaglia L (Accepted)
Reclassification of Paenibacillus riograndensis as a genomovar of Paenibacillus sonchi: genome-based metrics improve bacterial taxonomic classification.
Front. Microbiol. 8: 1849.
PUB | DOI
 
2017 | Conference Paper | PUB-ID: 2913016
Schulz T, Stoye J, Dörr D (Accepted)
Finding Teams in Graphs and its Application to Spatial Gene Cluster Discovery.
In: Proceedings of RECOMB-CG 2017. Lecture Notes in Bioinformatics, Berlin: Springer Verlag.
PUB
 
2017 | Conference Paper | PUB-ID: 2913015
Rubert DP, Medeiros GL, Hoshino EA, Dias Vieira Braga M, Stoye J, Martinez FV (Accepted)
Algorithms for Computing the Family-Free Genomic Similarity under DCJ.
In: Proceedings of RECOMB-CG 2017. Lecture Notes in Bioinformatics, Springer Verlag.
PUB
 
2017 | Book Chapter | PUB-ID: 2913921
Zekic T, Holley G, Stoye J (In Press)
Pan-genome Storage and Analysis Techniques.
In: Comparative Genomics. Setubal JC, Stadler P, Stoye J (Eds); Springer Verlag.
PUB
 
2017 | Book Chapter | PUB-ID: 2913924
Anselmetti Y, Luhmann N, Bérard S, Tannier E, Chauve C (In Press)
Comparative Methods for Reconstructing Ancient Genome Organization.
In: Comparative Genomics. Setubal JC, Stadler P, Stoye J (Eds); Methods in Molecular Biology, Springer Verlag.
PUB
 
2017 | Book Chapter | PUB-ID: 2913922
Dörr D, Feijão P, Stoye J (In Press)
Family-Free Genome Comparison.
In: Comparative Genomics. Setubal JC, Stadler P, Stoye J (Eds); Springer Verlag.
PUB
 
2017 | Book (Editor) | PUB-ID: 2913920
Setubal JC, Stadler P, Stoye J (Eds) (In Press)
Comparative Genomics. Methods in Molecular Biology.
Springer Verlag.
PUB
 
2017 | Journal Article | PUB-ID: 2913898
Wendisch VF (Accepted)
Journal Club: Calvin-Zyklus-Enzym reguliert Methanol-Stoffwechsel.
BIOspektrum 06.17.
PUB
 
2017 | Conference Paper | PUB-ID: 2913690
Zhu L, Ester M (2017)
Bayesian Collective Markov Random Fields for Subcellular Localization Prediction of Human Proteins.
In: Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics - ACM-BCB '17. ACM Press.
PUB | PDF | DOI
 
2017 | Journal Article | PUB-ID: 2909153
Yu J, Blom J, Sczyrba A, Goesmann A (2017)
Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism.
Journal of Biotechnology 257: 58-60.
PUB | DOI | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2913019
Farnberger JE, Lorenz E, Richter N, Wendisch VF, Kroutil W (2017)
In vivo Plug-and-play: A Modular Multi-enzyme Single-cell Catalyst for the Asymmetric Amination of Ketoacids and Ketones.
Microbial Cell Factories 16: 132.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2907021
Irla M, Naerdal I, Brautaset T, Wendisch VF (2017)
Methanol-based γ-aminobutyric acid (GABA) production by genetically engineered Bacillus methanolicus strains.
Industrial Crops and Products 106: 12-20.
PUB | DOI | WoS
 
2017 | Journal Article | PUB-ID: 2913556
Jünemann S, Kleinbölting N, Jaenicke S, Henke C, Hassa J, Nelkner J, Stolze Y, Albaum S, Schlüter A, Goesmann A, Sczyrba A, Stoye J (In Press)
Bioinformatics for NGS-based metagenomics and the application to biogas research.
Journal of Biotechnology.
PUB | DOI
 
2017 | Conference Paper | PUB-ID: 2909409
Cunha L, Dantas S, Gagie T, Wittler R, Kowada L, Stoye J (2017)
Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings.
In: Proceedings of CPM 2017. LIPIcs, 78. 19:1-19:9.
PUB
 
2017 | Journal Article | PUB-ID: 2909055
Pfeifenschneider J, Brautaset T, Wendisch VF (2017)
Methanol as carbon source in the bio-economy: Metabolic engineering of aerobic methylotrophic bacteria for production of value-added chemicals.
Biofuels, Bioproducts and Biorefining 11: 719-731.
PUB | DOI | WoS
 
2017 | Journal Article | PUB-ID: 2913400
Nouioui I, Rückert C, Willemse J, van Wezel GP, Klenk H-P, Busche T, Kalinowski J, Bredholt H, Zotchev SB (2017)
Actinoalloteichus fjordicus sp. nov. isolated from marine sponges: phenotypic, chemotaxonomic and genomic characterisation.
Antonie Van Leeuwenhoek. Journal of Microbiology.
PUB | DOI | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2913401
Kämpfer P, Rückert C, Blom J, Goesmann A, Wink J, Kalinowski J, Glaeser SP (2017)
Streptomyces phaeopurpureus Shinobu 1957 (Approved Lists 1980) and Streptomyces griseorubiginosus (Ryabova and Preobrazhenskaya 1957) Pridham et al. 1958 (Approved Lists 1980) are heterotypic subjective synonyms.
International Journal of Systematic and Evolutionary Microbiology.
PUB | DOI | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2913404
Grimm I, Dumke J, Vollmer T, Hinse D, Rückert C, Kalinowski J, Knabbe C, Dreier J (2017)
Complete Genome Sequence of the Streptococcus gallolyticus subsp. gallolyticus Strain DSM 16831.
Genome Announcements 5(16).
PUB | DOI | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2913367
Baumgart M, Unthan S, Kloss R, Radek A, Polen T, Tenhaef N, Müller MF, Küberl A, Siebert D, Brühl N, Marin K, Hans S, Krämer R, Bott M, Kalinowski J, Wiechert W, Seibold G, Frunzke J, Rückert C, Wendisch VF, Noack S (2017)
Corynebacterium glutamicum chassis C1*: Building and testing a novel platform host for synthetic biology and industrial biotechnology.
ACS Synthetic Biology.
PUB | DOI | PubMed | Europe PMC
 
2017 | Book Chapter | PUB-ID: 2905383
Heider S, Henke NA, Peters-Wendisch P, Wendisch VF (2017)
C50 carotenoids: Occurrence, biosynthesis, glycosylation and metabolic engineering for their overproduction.
In: Bio-pigmentation and Biotechnology implications. Singh OV (Ed); Hoboken, NJ, USA: John Wiley & Sons, Inc.: 107-126.
PUB
 
2017 | Journal Article | PUB-ID: 2913386
Jaeger D, Winkler A, Mussgnug JH, Kalinowski J, Goesmann A, Kruse O (2017)
Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation.
Biotechnology for Biofuels 10(1).
PUB | DOI
 
2017 | Journal Article | PUB-ID: 2913038
Klassen V, Blifernez-Klassen O, Wibberg D, Winkler A, Kalinowski J, Posten C, Kruse O (2017)
Highly efficient methane generation from untreated microalgae biomass.
Biotechnology for Biofuels 10(1): 186.
PUB | PDF | DOI
 
2017 | Journal Article | PUB-ID: 2912905
Uhmeyer A, Cecchin M, Ballottari M, Wobbe L (2017)
Impaired Mitochondrial Transcription Termination Disrupts the Stromal Redox Poise in Chlamydomonas.
Plant Physiol 174(3): 1399-1419.
PUB | DOI | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2913216
Venkanna D, Südfeld C, Baier T, Homburg SV, Patel A, Wobbe L, Kruse O (2017)
Knock-Down of the IFR1 Protein Perturbs the Homeostasis of Reactive Electrophile Species and Boosts Photosynthetic Hydrogen Production in Chlamydomonas reinhardtii.
Frontiers in Plant Science 8: 1347.
PUB | PDF | DOI
 
2017 | Journal Article | PUB-ID: 2913154
Jaen KE, Sigala J-C, Olivares-Hernandez R, Niehaus K, Lara AR (2017)
Heterogeneous oxygen availability affects the titer and topology but not the fidelity of plasmid DNA produced by Escherichia coli.
BMC BIOTECHNOLOGY 17: 60.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2908402
Schramke H, Laermann V, Tegetmeyer H, Brachmann A, Jung K, Altendorf K (2017)
Revisiting regulation of potassium homeostasis in Escherichia coli: the connection to phosphate limitation.
MicrobiologyOpen 6(3): e00438.
PUB | DOI | WoS
 
2017 | Journal Article | PUB-ID: 2913116
Wolf T, Droste J, Gren T, Ortseifen V, Schneiker-Bekel S, Zemke T, Pühler A, Kalinowski J (2017)
The MalR type regulator AcrC is a transcriptional repressor of acarbose biosynthetic genes in Actinoplanes sp. SE50/110.
BMC Genomics 18: 62.
PUB | PDF | DOI
 
2017 | Journal Article | PUB-ID: 2912419
Taniguchi H, Busche T, Patschkowski T, Niehaus K, Patek M, Kalinowski J, Wendisch VF (2017)
Physiological roles of sigma factor SigD in Corynebacterium glutamicum.
BMC Microbiology 17: 158.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2913110
Kulis-Horn RK, Rückert C, Kalinowski J, Persicke M (2017)
Sequence-based identification of inositol monophosphatase-like histidinol-phosphate phosphatases (HisN) in Corynebacterium glutamicum, Actinobacteria, and beyond.
BMC Microbiology 17(1): 161.
PUB | PDF | DOI
 
2017 | Journal Article | PUB-ID: 2908307
Perez F, Risse JM, Friehs K, Wendisch VF (2017)
Fermentative production of L-pipecolic acid from glucose and alternative carbon sources.
Biotechnology Journal 12(7): 1600646.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2912973
Stark H, Wolf J, Albersmeier A, Pham TK, Hofmann JD, Siebers B, Kalinowski J, Wright PC, Neumann-Schaal M, Schomburg D (2017)
Oxidative Stickland reactions in an obligate aerobic organism - amino acid catabolism in the Crenarchaeon Sulfolobus solfataricus.
FEBS JOURNAL 284(13): 2078-2095.
PUB | DOI | WoS
 
2017 | Journal Article | PUB-ID: 2912983
Boehm K, Meyer F, Rhomberg A, Kalinowski J, Donovan C, Bramkamp M (2017)
Novel Chromosome Organization Pattern in Actinomycetales-Overlapping Replication Cycles Combined with Diploidy.
MBIO 8(3): e00511-17.
PUB | DOI | WoS
 
2017 | Journal Article | PUB-ID: 2911321
Lee J-H, Wendisch VF (2017)
Production of amino acids - Genetic and metabolic engineering approaches.
Biores Technol.
PUB | DOI | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2912492
Luhmann N, Dörr D, Chauve C (2017)
Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes.
Microbial Genomics.
PUB | DOI
 
2017 | Preprint | PUB-ID: 2908521
Cunha L, Dantas S, Gagie T, Wittler R, Kowada L, Stoye J (2017)
Faster Jumbled Indexing for Binary Run-Length Encoded Strings.
arXiv: 1702.01280.
PUB
 
2017 | Conference Paper | PUB-ID: 2907587
Holley G, Wittler R, Stoye J, Hach F (2017)
Dynamic Alignment-Free and Reference-Free Read Compression.
In: Proceedings of RECOMB 2017. Lecture Notes in Bioinformatics, 10229. 50-65.
PUB
 
2017 | Journal Article | PUB-ID: 2909967
Dörr D, Kowada LAB, Soares de Araujo FE, Deshpande S, Dantas S, Moret BME, Stoye J (2017)
New Genome Similarity Measures based on Conserved Gene Adjacencies.
Journal of Computational Biology 24(6): 616-634.
PUB | DOI | WoS
 
2017 | Journal Article | PUB-ID: 2912344
Alfredo Banuelos-Vazquez L, Torres Tejerizo GA, Brom S (2017)
Regulation of conjugative transfer of plasmids and integrative conjugative elements.
PLASMID 91: 82-89.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2912114
Verwaaijen B, Wibberg D, Kröber M, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A (2017)
The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.).
PLOS ONE 12(5): e0177278.
PUB | PDF | DOI
 
2017 | Journal Article | PUB-ID: 2912103
Tokovenko B, Rückert C, Kalinowski J, Mohammadipanah F, Wink J, Rosenkränzer B, Myronovskyi M, Luzhetskyy A (2017)
Complete Draft Genome Sequence of the Actinobacterium Nocardiopsis sinuspersici UTMC102 (DSM 45277T), Which Produces Serine Protease.
Genome Announc 5(20).
PUB | DOI | PubMed | Europe PMC
 
2017 | Book Chapter | PUB-ID: 2908205
Henke NA, Peters-Wendisch P, Wendisch VF (2017)
Carotenoid production by Corynebacterium: the workhorse of industrial amino acid production as host for production of a broad spectrum of C40 and C50 carotenoids.
In: Carotenoids. Cvetković D (Ed); 1st ed. Rijeka, Croatia: IN TECH d.o.o.: 159-173.
PUB | DOI
 
2017 | Journal Article | PUB-ID: 2911994
Wolf F, Bauer JS, Bendel TM, Kulik A, Kalinowski J, Gross H, Kaysser L (2017)
Biosynthesis of the beta-Lactone Proteasome Inhibitors Belactosin and Cystargolide.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 56(23): 6665-6668.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | PUB-ID: 2911997
Omar Draghi W, Florencia Del Papa M, Barsch A, Albicoro FJ, Lozano MJ, Pühler A, Niehaus K, Lagares A (2017)
A metabolomic approach to characterize the acid-tolerance response in Sinorhizobium meliloti.
METABOLOMICS 13(6): 71.
PUB | DOI | WoS
 

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